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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064545 ID=TCONS_00064545|Name=TCONS_00064545|organism=Clytia hemisphaerica|type=transcript|length=4408bp
GGTGCATTTAGAAAGAGCAATGTCGATCAAAGAGCTTTGGTATACAACTC
TTACGAAGAAATTCTCAAAAAGAGTTCGAAACACCATCAAAAAGAATATC
TACACCGTCGGTAGTGGAAGTTATGACATTGAAAAAGCACGACACAGCGG
ATATGTCGACATGTTCAATTACGACGATTATGATCACGTGACTatggatg
acgtcatcgatgagaCAATGACATCATCTTCATTTCAACCGAAGAAAAAA
AGCGATGCATCAAAGTATCAGTGTAAAAGTAATGACGTCAAAAGTCGTTA
CCAGTATAAATCTGACGTCGTCAATTTACGTCACGATTATAAGTCGGATG
TTGTCATACACGTCACTGACACTACACATTACGATATTCCGAAATTACAA
CCTCTTGAAGATGATTTTGACGTTCATCCTGCAATGGATTCTGAGCACTT
TTATGACGTTCCAAAAGCAATCATGCACGGCCATCACGACACACCAAACA
TAAAAAAACGTCAACGGAAAACAAACAACGCCAGAAAAAACCGAGATTTT
CATTTGAACGTTCCTGACCGGGATAGCATGGTTTCTGGAAGATATCAACG
TTTGGTTTTACGTAAAAAGAAAGAATTAAAGAAACAACAGCGTAGAAGTC
GTATAAATGAACTTTACGAAAACGTCGAAAGTGGATCCGACTCCGACAGT
GATATGACGGATTCTGAGGACGACATTTCCGGTACTGATAGTCCGTATGA
AGATTATTACGACATGTATACGCCGTTAGATGGATGTCATGATCAGAATG
AAAAACCTGAGTTTTACGGACGTTTCTTCAGTCATACCTTAACACGTGAC
AAAGAGAGGCTAAGTACAGGTTTTCAGAGAAGCAATTTCAAGCGTAGTGT
ACATAGGTCCGTAAACGTCAAATTCGAATTCAAGAAAAGCAATACCAAGT
TAGTAAACACACTAAACAGAGATAACccattgaaaaaaacttttgataaa
gTCAAACTGTTGGCAACTGATGATTGGCTTTTCGAGCTTGATGAATCCAA
GTTGGCCTTAGAACTAAAAATACGGAATGGTCTTGAAAGCAGGATCTTGT
ACCACCATTTGAGAGGCTGGAAACCTAAAAATGGTTTCCGTGCCTCAGCC
TGGAAAGACAAATTCGCAGAGGATTTGACAGTGTACGAACTATTTTTATT
CATATCTGGTAATTGTGATTCAAAGTTAGCTTGCAGACTAAAAATATACC
AAGTTGACGGTTATATGATGAGTCTGTTGGTGAAAGATGAACTTCTATTT
CGAGATTGCTTACTGAGCTTGGGAGAATTGCAAACGTTGAGAGAATCGTT
TTATCCGATACGAACCCGATGTGATGCAGTCGGGGAACACGATTTAAAAG
AGAAATTCGAAGAACattctcaTGTGTTGtaaaggattttttttctttca
aggaATTCTGAACGATCTTCCATTCTGGTGCCCAGAGCAACTTGCACCAC
ATTATggttttactgatggacgtgatgCAATTGTAAGCGCTATCagaata
aacacccctgtctcacagccccactggaacttttttcctaagtggggata
aaattcctattgaaattccaattgGGATAGAGATTCAAagattgttccaa
ggttaaaaaacccagtggggatggttttagagtgtaatttttaaacatgg
aatttcgagtggggatgaaatcaaagtcgatttcccagtggggctgaaat
tcaagggtattttcccatcgggcttttttccagtgggactggGGTCCCAA
CGGGTCTGTTACACAGGGGTGTAGAGTAATACGAAAGCGGGTTAAAGTTA
GAAAACCCTTCAATCGACTCGGAGAAAAACTACCAGAAAGGTCCAGATAA
ACACATAATAGGGAGACTAGATTAGAGTTTAACAGGAGATATATCATATG
CAACGAATTCAAGATAATCGAGGTCAACATTTCTTGTTAAACTCTTACCC
AGTCTATTTAAAGATAGACCGGAGCGTCATTTTGAGCTTTCGTTTTACAT
ATTCTTTAATAtacattttcaagatattttaaaaatcataattAGAAATT
ACAATGTAAATAAtattaagaaaaattaaaattttgtcaacaattaaatt
tcatttcacGAATCTATAGTCGAGTCCTCTCAAACAGGGGTTATCCTTTA
CCGATTCTATCTCAGCCTCCAAATTCATGTTTCTTTAGGAAATATGGAAT
AAACCATTGAAGCCACTTTGAAAAACCAGGaaatattgcaaaaattgaAT
GGAATACTGTATAAAAATTGCCTAAGAGCAAACATTACAACTTGGATGAC
TGAGACATTTCATCCCTATTCActctttttgtataagaactAGTAACAAT
TGCTATTATTTTGACACTTTAAGCCTCAAATTATTCATATCATGTtcaag
tctattcacgataagtgtgcactctttttcttttacctataacttttgaa
ggaattcttcaatctttataaatttggtatcatcggaaagatattagtga
gtggaacaatttgaaataaaaagatctttaaaagaattctaaaaatgaag
atgaaaatgaagaagaaaaaaatgaagatcttgtagaaaagtgctataac
tttcattttcactggagagattctttgatcttaggagattatcactgtga
agaaattttattaaaatacttattaaatataaagttatgatacaaagtta
ataagtgattgaccccaaaaaaacagcaaaaaactgcagaaaacagcatt
tttagacgtcaatcagcttataactttgtttgatatcttttgactgaagg
ATTCACCTCAGTAATCcatccactcactaatatctttcccatgataccaa
atttttgaagattgaagaattccgtcaaaagttataggtaaaagaaaaaa
gagtgcacacttatcgtgaatagactttaattaaAGTGTGAAATCAGGAT
ATCATAGGCTTTACATTCaaattttactactttgacccctaaattgctta
aaattgagtaattctaggcttagcattgttcttaaattgttctcattttt
cgaacctcataattcttataaaattttcttataaaaataagagTTTAATC
TTGATATCATTGTCTCCTTTGTAAGTCACAGTGGAAGCAAAGAAACGTAT
TTTTTGTTAGTAaaaccatataagaacataaggcggcttcgatggccaaa
ttgttaagaatatgttaagatccttttaaggctttgtagactctaGAACA
CCTGGgtccttaggaaaatggacaaaaatactcacaaaatggtgaaaata
agaacatggtaagaacatttttaggcttagagctcaaaaagtttttggat
gttcttataaaaaaacgtgtacacaataaaaaacatcaaagcaTCTCATC
GTCCATTGGAAAGTAAGTAGTAAGTGTGCGACCGCTTTTAGGGTGTAACC
CAGAGGTTTCCTTTTATTTTAATCCGTCTATTTAATTGCTATGCATCAAG
CCGAGAATATCAACGAGTACAATTTCAGGAATGACCCTTAACCTTGCACA
CCGTACgtggatgctctacctttatgCTTGCGGCCAATTGAATAACTCTT
TTAAATAAAGAACAAAAGATATCTATTTACACTTTTTTACATTTCCCAAT
CAATAAAGCCAACAGTCAAAAATGCAACAATCTTGACAGCAACAGTTAGG
TACATAGCTAAActtggtcaaatttttcaatattttctcttGTTAAACGT
GTGTTCTCAACGTTTTTAATTTGAGGTAGAACCATGTGACGTGTTCCGCC
TTGGAATGAAGCTTCGTGAGATTTCTTCTCTCGCAACTCAATACTCGGTG
TTCCATCGTCTAAACTATTGAAATAATATCGAAGTCGACTTTCCTGTAAC
GTGTTTTTACGAGATACATTTTTACGAGAATAGTCGGAATCGGTACCGAA
TGACAATGATCGGCTTTTTCCATTCCGACAAATTACCGAAGTCGAATCGT
CGGTAAGAATACATTTTGTCTCATCGTTTGAAACTCGGCTGTATCCTGAT
ACAGAAACCTCGGCTATTGACGGCGATTCTCGGTAAAACGAACTTGATGA
ATCGGAAGAAGACATTAAGATATCGTCAGAAAATACCGACGACGATTTTT
GTAAGAATCCTCGTGGACGATTTCCGACAACACTGTCTTGTGACATAGCT
CTTCTTGATAGTAAACGCCTTGGTGTAGAACACGTTTGGGGCGACATGCT
GGGCGGGATCGGGGTTGATCGACGTTTCGGTCGCAAAGACATGATTGCGA
GGAAGATTTATTCTTCCAgaaatttatgatgaaattttatcacttttttt
gctaaaaC Run BLAST on NCBI transcript from alignment at scaffold_419:156962..161726+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064545 ID=TCONS_00064545|Name=TCONS_00064545|organism=Clytia hemisphaerica|type=transcript|length=4765bp|location=Sequence derived from alignment at scaffold_419:156962..161726+ (Clytia hemisphaerica)
GGTGCATTTAGAAAGAGCAATGTCGATCAAAGAGCTTTGGTATACAACTC
TTACGAAGAAATTCTCAAAAAGAGTTCGAAACACCATCAAAAAGAATATC
TACACCGTCGGTAGTGGAAGTTATGACATTGAAAAAGCACGACACAGCGG
ATATGTCGACATGTTCAATTACGACGATTATGATCACGTGACTatggatg
acgtcatcgatgagaCAATGACATCATCTTCATTTCAACCGAAGAAAAAA
AGCGATGCATCAAAGTATCAGTGTAAAAGTAATGACGTCAAAAGTCGTTA
CCAGTATAAATCTGACGTCGTCAATTTACGTCACGATTATAAGTCGGATG
TTGTCATACACGTCACTGACACTACACATTACGATATTCCGAAATTACAA
CCTCTTGAAGATGATTTTGACGTTCATCCTGCAATGGATTCTGAGCACTT
TTATGACGTTCCAAAAGCAATCATGCACGGCCATCACGACACACCAAACA
TAAAAAAACGTCAACGGAAAACAAACAACGCCAGAAAAAACCGAGATTTT
CATTTGAACGTTCCTGACCGGGATAGCATGGTTTCTGGAAGATATCAACG
TTTGGTTTTACGTAAAAAGAAAGAATTAAAGAAACAACAGCGTAGAAGTC
GTATAAATGAACTTTACGAAAACGTCGAAAGTGGATCCGACTCCGACAGT
GATATGACGGATTCTGAGGACGACATTTCCGGTACTGATAGTCCGTATGA
AGATTATTACGACATGTATACGCCGTTAGATGGATGTCATGATCAGAATG
AAAAACCTGAGTTTTACGGACGTTTCTTCAGTCATACCTTAACACGTGAC
AAAGAGAGGCTAAGTACAGGTTTTCAGAGAAGCAATTTCAAGCGTAGTGT
ACATAGGTCCGTAAACGTCAAATTCGAATTCAAGAAAAGCAATACCAAGT
TAGTAAACACACTAAACAGAGATAACccattgaaaaaaacttttgataaa
gTCAAACTGTTGGCAACTGATGATTGGCTTTTCGAGCTTGATGAATCCAA
GTTGGCCTTAGAACTAAAAATACGGAATGGTCTTGAAAGCAGGATCTTGT
ACCACCATTTGAGAGGCTGGAAACCTAAAAATGGTTTCCGTGCCTCAGCC
TGGAAAGACAAATTCGCAGAGGATTTGACAGTGTACGAACTATTTTTATT
CATATCTGGTAATTGTGATTCAAAGTTAGCTTGCAGACTAAAAATATACC
AAGTTGACGGTTATATGATGAGTCTGTTGGTGAAAGATGAACTTCTATTT
CGAGATTGCTTACTGAGCTTGGGAGAATTGCAAACGTTGAGAGAATCGTT
TTATCCGATACGAACCCGATGTGATGCAGTCGGGGAACACGATTTAAAAG
AGAAATTCGAAGAACATTCTCATATGTTGTaaagggtttttttcttttaa
ggaATTCTGAATGATCTCCGATTCTGGCgcccagagccacttgcaccacA
TTATGGTTTTACTAATGGACGTGATACAATggtgagcgctatcagaataa
acacccctgtcttacagctccactggaacttttttcctcaatgAGGATAA
AATTCCTGTTGAAATTCCAATTGGAATAgagattctattgttccaaggtg
gggatggttttagagtgTAACTTTTTAAACATGNATTCAAAAGTTGAGAG
AATCGTTTTATCCGATACGAACCCGATGTGATGCAATCGGGGAACACGAT
TTAAAAGAGaaattctaagaacattctcaTGTGTTGtaaaggattttttt
tctttcaaggaATTCTGAACGATCTTCCATTCTGGTGCCCAGAGCAACTT
GCACCACATTATggttttactgatggacgtgatgCAATTGTAAGCGCTAT
Cagaataaacacccctgtctcacagccccactggaacttttttcctaagt
ggggataaaattcctattgaaattccaattgGGATAGAGATTCAAagatt
gttccaaggttaaaaaacccagtggggatggttttagagtgtaattttta
aacatggaatttcgagtggggatgaaatcaaagtcgatttcccagtgggg
ctgaaattcaagggtattttcccatcgggcttttttccagtgggactggG
GTCCCAACGGGTCTGTTACACAGGGGTGTAGAGTAATACGAAAGCGGGTT
AAAGTTAGAAAACCCTTCAATCGACTCGGAGAAAAACTACCAGAAAGGTC
CAGATAAACACATAATAGGGAGACTAGATTAGAGTTTAACAGGAGATATA
TCATATGCAACGAATTCAAGATAATCGAGGTCAACATTTCTTGTTAAACT
CTTACCCAGTCTATTTAAAGATAGACCGGAGCGTCATTTTGAGCTTTCGT
TTTACATATTCTTTAATAtacattttcaagatattttaaaaatcataatt
AGAAATTACAATGTAAATAAtattaagaaaaattaaaattttgtcaacaa
ttaaatttcatttcacGAATCTATAGTCGAGTCCTCTCAAACAGGGGTTA
TCCTTTACCGATTCTATCTCAGCCTCCAAATTCATGTTTCTTTAGGAAAT
ATGGAATAAACCATTGAAGCCACTTTGAAAAACCAGGaaatattgcaaaa
attgaATGGAATACTGTATAAAAATTGCCTAAGAGCAAACATTACAACTT
GGATGACTGAGACATTTCATCCCTATTCActctttttgtataagaactAG
TAACAATTGCTATTATTTTGACACTTTAAGCCTCAAATTATTCATATCAT
GTtcaagtctattcacgataagtgtgcactctttttcttttacctataac
ttttgaaggaattcttcaatctttataaatttggtatcatcggaaagata
ttagtgagtggaacaatttgaaataaaaagatctttaaaagaattctaaa
aatgaagatgaaaatgaagaagaaaaaaatgaagatcttgtagaaaagtg
ctataactttcattttcactggagagattctttgatcttaggagattatc
actgtgaagaaattttattaaaatacttattaaatataaagttatgatac
aaagttaataagtgattgaccccaaaaaaacagcaaaaaactgcagaaaa
cagcatttttagacgtcaatcagcttataactttgtttgatatcttttga
ctgaaggATTCACCTCAGTAATCcatccactcactaatatctttcccatg
ataccaaatttttgaagattgaagaattccgtcaaaagttataggtaaaa
gaaaaaagagtgcacacttatcgtgaatagactttaattaaAGTGTGAAA
TCAGGATATCATAGGCTTTACATTCaaattttactactttgacccctaaa
ttgcttaaaattgagtaattctaggcttagcattgttcttaaattgttct
catttttcgaacctcataattcttataaaattttcttataaaaataagag
TTTAATCTTGATATCATTGTCTCCTTTGTAAGTCACAGTGGAAGCAAAGA
AACGTATTTTTTGTTAGTAaaaccatataagaacataaggcggcttcgat
ggccaaattgttaagaatatgttaagatccttttaaggctttgtagactc
taGAACACCTGGgtccttaggaaaatggacaaaaatactcacaaaatggt
gaaaataagaacatggtaagaacatttttaggcttagagctcaaaaagtt
tttggatgttcttataaaaaaacgtgtacacaataaaaaacatcaaagca
TCTCATCGTCCATTGGAAAGTAAGTAGTAAGTGTGCGACCGCTTTTAGGG
TGTAACCCAGAGGTTTCCTTTTATTTTAATCCGTCTATTTAATTGCTATG
CATCAAGCCGAGAATATCAACGAGTACAATTTCAGGAATGACCCTTAACC
TTGCACACCGTACgtggatgctctacctttatgCTTGCGGCCAATTGAAT
AACTCTTTTAAATAAAGAACAAAAGATATCTATTTACACTTTTTTACATT
TCCCAATCAATAAAGCCAACAGTCAAAAATGCAACAATCTTGACAGCAAC
AGTTAGGTACATAGCTAAActtggtcaaatttttcaatattttctcttGT
TAAACGTGTGTTCTCAACGTTTTTAATTTGAGGTAGAACCATGTGACGTG
TTCCGCCTTGGAATGAAGCTTCGTGAGATTTCTTCTCTCGCAACTCAATA
CTCGGTGTTCCATCGTCTAAACTATTGAAATAATATCGAAGTCGACTTTC
CTGTAACGTGTTTTTACGAGATACATTTTTACGAGAATAGTCGGAATCGG
TACCGAATGACAATGATCGGCTTTTTCCATTCCGACAAATTACCGAAGTC
GAATCGTCGGTAAGAATACATTTTGTCTCATCGTTTGAAACTCGGCTGTA
TCCTGATACAGAAACCTCGGCTATTGACGGCGATTCTCGGTAAAACGAAC
TTGATGAATCGGAAGAAGACATTAAGATATCGTCAGAAAATACCGACGAC
GATTTTTGTAAGAATCCTCGTGGACGATTTCCGACAACACTGTCTTGTGA
CATAGCTCTTCTTGATAGTAAACGCCTTGGTGTAGAACACGTTTGGGGCG
ACATGCTGGGCGGGATCGGGGTTGATCGACGTTTCGGTCGCAAAGACATG
ATTGCGAGGAAGATTTATTCTTCCAgaaatttatgatgaaattttatcac
tttttttgctaaaaC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064545-exon-scaffold_419-1491911889:156962..158376 | TCONS_00064545-exon-scaffold_419-1491911889:156962..158376 | Clytia hemisphaerica | exon |
| TCONS_00064545-exon-scaffold_419-1510915933:156962..158376 | TCONS_00064545-exon-scaffold_419-1510915933:156962..158376 | Clytia hemisphaerica | exon |
| TCONS_00064545-exon-scaffold_419-1575043694:156962..158376 | TCONS_00064545-exon-scaffold_419-1575043694:156962..158376 | Clytia hemisphaerica | exon |
| TCONS_00064545-exon-scaffold_419-1491911889:158734..161726 | TCONS_00064545-exon-scaffold_419-1491911889:158734..161726 | Clytia hemisphaerica | exon |
| TCONS_00064545-exon-scaffold_419-1510915933:158734..161726 | TCONS_00064545-exon-scaffold_419-1510915933:158734..161726 | Clytia hemisphaerica | exon |
| TCONS_00064545-exon-scaffold_419-1575043694:158734..161726 | TCONS_00064545-exon-scaffold_419-1575043694:158734..161726 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_419 | supercontig | scaffold_419:156962..161726 + |
Blast
The following BLAST results are available for this feature:
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