TCONS_00064609 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064609
Unique NameTCONS_00064609
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064609 ID=TCONS_00064609|Name=TCONS_00064609|organism=Clytia hemisphaerica|type=transcript|length=376bp
ctatcATGAGCTAAATCTTGCTACCATTTTCAACTTTCCCTAAACTTGCC
CTCCtccaaaatgaagaaaaataaatcagCAACCACGATGGGGCCTATGG
CATCAACTGCGGGGCAAATTACCAAAAATTACACCCTTGTTATTGGTTTT
TATAGAAGTGTTGGGAAATTTGACAGTGGGTGCTCTGTTATTCTCCGATC
AGCATTGTCATTGGcaattttgaaggaaatagaaaaattaaagtGGGTGC
GCTAACAGTGAAAATTTATTTGTTGTGGTCTCTTTGCAGAAATGTTCGCT
CAATTGTGTTGTTAAATGCTGAGAAACAAACATATCACTGTGTACCCTAC
TGAATTACTCCAgcatttattttgtt
Run BLAST on NCBI

transcript from alignment at scaffold_419:228512..228887

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064609 ID=TCONS_00064609|Name=TCONS_00064609|organism=Clytia hemisphaerica|type=transcript|length=376bp|location=Sequence derived from alignment at scaffold_419:228512..228887 (Clytia hemisphaerica)
aacaaaataaatgcTGGAGTAATTCAGTAGGGTACACAGTGATATGTTTG
TTTCTCAGCATTTAACAACACAATTGAGCGAACATTTCTGCAAAGAGACC
ACAACAAATAAATTTTCACTGTTAGCGCACCCactttaatttttctattt
ccttcaaaattgCCAATGACAATGCTGATCGGAGAATAACAGAGCACCCA
CTGTCAAATTTCCCAACACTTCTATAAAAACCAATAACAAGGGTGTAATT
TTTGGTAATTTGCCCCGCAGTTGATGCCATAGGCCCCATCGTGGTTGctg
atttatttttcttcattttggaGGAGGGCAAGTTTAGGGAAAGTTGAAAA
TGGTAGCAAGATTTAGCTCATgatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040518XLOC_040518Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064609-exon-scaffold_419-1491911889:228512..228887TCONS_00064609-exon-scaffold_419-1491911889:228512..228887Clytia hemisphaericaexon
TCONS_00064609-exon-scaffold_419-1510915933:228512..228887TCONS_00064609-exon-scaffold_419-1510915933:228512..228887Clytia hemisphaericaexon
TCONS_00064609-exon-scaffold_419-1575043694:228512..228887TCONS_00064609-exon-scaffold_419-1575043694:228512..228887Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:228512..228887 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.207164	0	0	0	0	0	0	0.358041	1.33047	0	0.56594	9.04245	8.21684	7.35851	1.68293	0.159479	3.43268	4.96826	4.96261	0	0.601123	0.243581	0.221451	0	0	1.1652	0.310883	3.30111	2.88284
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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