|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064610 ID=TCONS_00064610|Name=TCONS_00064610|organism=Clytia hemisphaerica|type=transcript|length=1206bp
ATTGATTTCCCGCAAATTTCATTTTCCGCTTATTTCACTCTTGAAATGCT
CATAAAATTTGATATTAAATATAAGATTTCAGACTTTATATGGataattt
ttgacataatctTTGAGTATCCTTGGTAAAACATGTGTATCAACTGTCTC
TTCATTTACACAAACACGACACATATGCTTCAATGAAGAAATAGTATGTT
TAATTGgtgtcaaaagaaaaatctttttcactgATTTATTAGTTTCTTTA
CATTTCTTTACGTACAGTTCAATGAGTTTGATAACAGAATCAGCTTTCAG
TACGGAATCTTCTTTAGGAGTTTCTTGCTTTCCCTTTGAATTCATAAAAA
GTGTTGGACTGTGTGGTGACATAGGTTGATCTTCTTGTACAGGCGAAGAC
GATTTCTTTGCTGAcattgagaaataaaataaaccaaaacTATATTGAAT
TCTCGTGTTCTTCACCtcattcttttgatttttaaaagttaacGTGAAAT
AATTATCAACAGATTTACTTTCCCTAATAAGAAAGTGACCTGGTCCTTTA
TCAATCAGTAGGTTTGTAGCTTGCTCCTTTGACATTCCCTTATAATAGAA
GTTTGACTGGTGTAACTCGTTTAACACATGCTGAAATTGATCTTTTTGGT
ATCCAATGAAGCGATCAATATTATATTCTTCACTTTCAATCTTTGTTTCT
TCCTCGTACTTTATGGGATATGCTCCCGAATAGTGTAAAATCAGAGCCAT
ACAATTGCTGCATTTCTGTTGTATTTGTCCTACAGCACTTGTCATTAGAA
TACTGTTGTAGATTGAAGCTGTCTCCATTATTATTATAGCCACCACCAAT
AATTTATGCAAGAACAAGTAGCCTTTTTACTGCGGCTATGTTCTCGTCAA
TCAACCTTTTGAATATGAACAGCTATCACTTTCTACCTTTTTATTACTGA
AAAACAAGAGCAAAGGAAGGAAACGTTATAACCTTTGGTATATTAGATTT
CCTAGAAACCTACCCAGTGTGTGGTGTTGCCAATGTCCAAAACAAacccg
aaaaaaaaaaaaacgcttTCTTTTTCTACGATCTCAAGTTCTTGGAATTC
TCATGGTTAGGCTCTTAGTACACgacaaagcaaaaaaatataaacaaaaa
agtcgTGAAAAGATGGTAGCCAAAGTAGCGAGCATCAAATGTTTGGATTT
TTGCGG Run BLAST on NCBI protein sequence of TCONS_00064610-protein >TCONS_00064610-protein ID=TCONS_00064610-protein|Name=TCONS_00064610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
METASIYNSILMTSAVGQIQQKCSNCMALILHYSGAYPIKYEEETKIESE
EYNIDRFIGYQKDQFQHVLNELHQSNFYYKGMSKEQATNLLIDKGPGHFL
IRESKSVDNYFTLTFKNQKNEVKNTRIQYSFGLFYFSMSAKKSSSPVQED
QPMSPHSPTLFMNSKGKQETPKEDSVLKADSVIKLIELYVKKCKETNKSV
KKIFLLTPIKHTISSLKHMCRVCVNEETVDTHVLPRILKDYVKNYPYKV Run BLAST on NCBI transcript from alignment at scaffold_419:237024..238229 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064610 ID=TCONS_00064610|Name=TCONS_00064610|organism=Clytia hemisphaerica|type=transcript|length=1206bp|location=Sequence derived from alignment at scaffold_419:237024..238229 (Clytia hemisphaerica)
CCGCAAAAATCCAAACATTTGATGCTCGCTACTTTGGCTACCATCTTTTC
AcgacttttttgtttatatttttttgctttgtcGTGTACTAAGAGCCTAA
CCATGAGAATTCCAAGAACTTGAGATCGTAGAAAAAGAaagcgttttttt
ttttttcgggtTTGTTTTGGACATTGGCAACACCACACACTGGGTAGGTT
TCTAGGAAATCTAATATACCAAAGGTTATAACGTTTCCTTCCTTTGCTCT
TGTTTTTCAGTAATAAAAAGGTAGAAAGTGATAGCTGTTCATATTCAAAA
GGTTGATTGACGAGAACATAGCCGCAGTAAAAAGGCTACTTGTTCTTGCA
TAAATTATTGGTGGTGGCTATAATAATAATGGAGACAGCTTCAATCTACA
ACAGTATTCTAATGACAAGTGCTGTAGGACAAATACAACAGAAATGCAGC
AATTGTATGGCTCTGATTTTACACTATTCGGGAGCATATCCCATAAAGTA
CGAGGAAGAAACAAAGATTGAAAGTGAAGAATATAATATTGATCGCTTCA
TTGGATACCAAAAAGATCAATTTCAGCATGTGTTAAACGAGTTACACCAG
TCAAACTTCTATTATAAGGGAATGTCAAAGGAGCAAGCTACAAACCTACT
GATTGATAAAGGACCAGGTCACTTTCTTATTAGGGAAAGTAAATCTGTTG
ATAATTATTTCACgttaacttttaaaaatcaaaagaatgaGGTGAAGAAC
ACGAGAATTCAATATAgttttggtttattttatttctcaatgTCAGCAAA
GAAATCGTCTTCGCCTGTACAAGAAGATCAACCTATGTCACCACACAGTC
CAACACTTTTTATGAATTCAAAGGGAAAGCAAGAAACTCCTAAAGAAGAT
TCCGTACTGAAAGCTGATTCTGTTATCAAACTCATTGAACTGTACGTAAA
GAAATGTAAAGAAACTAATAAATcagtgaaaaagatttttcttttgacac
CAATTAAACATACTATTTCTTCATTGAAGCATATGTGTCGTGTTTGTGTA
AATGAAGAGACAGTTGATACACATGTTTTACCAAGGATACTCAAagatta
tgtcaaaaattatCCATATAAAGTCTGAAATCTTATATTTAATATCAAAT
TTTATGAGCATTTCAAGAGTGAAATAAGCGGAAAATGAAATTTGCGGGAA
ATCAAT Coding sequence (CDS) from alignment at scaffold_419:237024..238229 >TCONS_00064610 ID=TCONS_00064610|Name=TCONS_00064610|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_419:237024..238229 (Clytia hemisphaerica)
ATGGAGACAGCTTCAATCTACAACAGTATTCTAATGACAAGTGCTGTAGG
ACAAATACAACAGAAATGCAGCAATTGTATGGCTCTGATTTTACACTATT
CGGGAGCATATCCCATAAAGTACGAGGAAGAAACAAAGATTGAAAGTGAA
GAATATAATATTGATCGCTTCATTGGATACCAAAAAGATCAATTTCAGCA
TGTGTTAAACGAGTTACACCAGTCAAACTTCTATTATAAGGGAATGTCAA
AGGAGCAAGCTACAAACCTACTGATTGATAAAGGACCAGGTCACTTTCTT
ATTAGGGAAAGTAAATCTGTTGATAATTATTTCACgttaacttttaaaaa
tcaaaagaatgaGGTGAAGAACACGAGAATTCAATATAgttttggtttat
tttatttctcaatgTCAGCAAAGAAATCGTCTTCGCCTGTACAAGAAGAT
CAACCTATGTCACCACACAGTCCAACACTTTTTATGAATTCAAAGGGAAA
GCAAGAAACTCCTAAAGAAGATTCCGTACTGAAAGCTGATTCTGTTATCA
AACTCATTGAACTGTACGTAAAGAAATGTAAAGAAACTAATAAATcagtg
aaaaagatttttcttttgacacCAATTAAACATACTATTTCTTCATTGAA
GCATATGTGTCGTGTTTGTGTAAATGAAGAGACAGTTGATACACATGTTT
TACCAAGGATACTCAAagattatgtcaaaaattatCCATATAAAGTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064610-exon-scaffold_419-1491911889:237024..238229 | TCONS_00064610-exon-scaffold_419-1491911889:237024..238229 | Clytia hemisphaerica | exon |
| TCONS_00064610-exon-scaffold_419-1510915933:237024..238229 | TCONS_00064610-exon-scaffold_419-1510915933:237024..238229 | Clytia hemisphaerica | exon |
| TCONS_00064610-exon-scaffold_419-1575043694:237024..238229 | TCONS_00064610-exon-scaffold_419-1575043694:237024..238229 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_419 | supercontig | scaffold_419:237024..238229 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0035556 | intracellular signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0035556 |
intracellular signal transduction |
Blast
The following BLAST results are available for this feature:
|
