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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064566 ID=TCONS_00064566|Name=TCONS_00064566|organism=Clytia hemisphaerica|type=transcript|length=2859bpRun BLAST on NCBI protein sequence of TCONS_00064566-protein >TCONS_00064566-protein ID=TCONS_00064566-protein|Name=TCONS_00064566-protein|organism=Clytia hemisphaerica|type=polypeptide|length=795bp MKSLILSLVLFNIFTKVVSQALTKEWATPKLACIYGHNAKIYFNVRNLRKRun BLAST on NCBI transcript from alignment at scaffold_419:272288..280853- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064566 ID=TCONS_00064566|Name=TCONS_00064566|organism=Clytia hemisphaerica|type=transcript|length=8566bp|location=Sequence derived from alignment at scaffold_419:272288..280853- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_419:272288..280853- >TCONS_00064566 ID=TCONS_00064566|Name=TCONS_00064566|organism=Clytia hemisphaerica|type=CDS|length=26268bp|location=Sequence derived from alignment at scaffold_419:272288..280853- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064566 vs. Swiss-Prot (Human)
Match: FA11 (Coagulation factor XI OS=Homo sapiens GN=F11 PE=1 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 3.051e-43 Identity = 119/342 (34.80%), Postives = 166/342 (48.54%), Query Frame = 1
Query: 1450 LKHSTEINIARNFKECQYKCEAKSFCKSIVYNKKDQGCYLMKDTSSTVPRDYSEPCKTTTHPEDYLYAEIIEQCGI----SKVIQKRIIGGQDADVGEYPWQVWYANVEFTPTGENFTICGGNLIHKKWVLTAAHCI----KDEIVHNRVELGEHVRQIRGDGTQLAQVKKIILHESFNKPHSFSYDFALLELETEVEITDRVRTICLPKKYQQSENHFDNDECYITGWG------KMQNDNPKIPKHGTLQEATVRVYTKEECLNDRGNNRIDDSIFCAGYRRGGKDTCKGDSGGPLQCKDGNRWILWGVTSFGKRPCASPGKASGYGRVTHVLDWIEEKT 2433
L +I A++ + CQ C C+ Y C K P K H + + C + + I+ RI+GG + GE+PWQV +PT + +CGG++I +W+LTAAHC +I+ RV G + + T V++II+H+ + S YD ALL+LET V TD R ICLP K ++ + D C++TGWG K+QN TLQ+A + + T EEC ++I + CAGYR GGKD CKGDSGGPL CK W L G+TS+G+ CA + Y V +DWI EKT
Sbjct: 302 LGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKIL-HGRGGISGYTLRLCKMDNECTTKIKPRIVGGTASVRGEWPWQVTLHTT--SPTQRH--LCGGSIIGNQWILTAAHCFYGVESPKIL--RVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAES-GYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTD---CWVTGWGYRKLRDKIQN---------TLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGE-GCAQRERPGVYTNVVEYVDWILEKT 622 The following BLAST results are available for this feature:
BLAST of TCONS_00064566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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