TCONS_00064617 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064617
Unique NameTCONS_00064617
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064617 ID=TCONS_00064617|Name=TCONS_00064617|organism=Clytia hemisphaerica|type=transcript|length=341bp
aaattatctacttgtgacgtcataatttcccattgatgacgtcacattta
acgtaactcgtgttttttgtaactcgtgtttttttaactcgtgtcTTTTA
ACTCGTACTTTCCGAGCCTCATTTCAGCAGCATTAGATTTTTTCTTGGGt
tgtaaatataattttttctattttttttaaggGTAAAAAGTTTAATATCT
TGAGCACGCATGTTATGATTATGTTCTGCGTTTGTTTAGtttcaagttat
ttttttaatttgcatTGTTTTTTATGTGAAAACTCTTTTGTTTTTCACAT
GAATTTTAATATACATTAGTATTACTTTTGTTTAAAACgat
Run BLAST on NCBI

transcript from alignment at scaffold_419:366265..366605

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064617 ID=TCONS_00064617|Name=TCONS_00064617|organism=Clytia hemisphaerica|type=transcript|length=341bp|location=Sequence derived from alignment at scaffold_419:366265..366605 (Clytia hemisphaerica)
atcGTTTTAAACAAAAGTAATACTAATGTATATTAAAATTCATGTGAAAA
ACAAAAGAGTTTTCACATAAAAAACAatgcaaattaaaaaaataacttga
aaCTAAACAAACGCAGAACATAATCATAACATGCGTGCTCAAGATATTAA
ACTTTTTACccttaaaaaaaatagaaaaaattatatttacaaCCCAAGAA
AAAATCTAATGCTGCTGAAATGAGGCTCGGAAAGTACGAGTTAAAAgaca
cgagttaaaaaaacacgagttacaaaaaacacgagttacgttaaatgtga
cgtcatcaatgggaaattatgacgtcacaagtagataattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040526XLOC_040526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064617-exon-scaffold_419-1491911889:366265..366605TCONS_00064617-exon-scaffold_419-1491911889:366265..366605Clytia hemisphaericaexon
TCONS_00064617-exon-scaffold_419-1510915933:366265..366605TCONS_00064617-exon-scaffold_419-1510915933:366265..366605Clytia hemisphaericaexon
TCONS_00064617-exon-scaffold_419-1575043694:366265..366605TCONS_00064617-exon-scaffold_419-1575043694:366265..366605Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:366265..366605 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09467	0.524185	0.309549	0.914408	0	0.33095	0.413877	0.353108	1.02587	0.613993	0.553812	0.761638	1.3092	0.60768	0.985731	0.997059	0.83972	0.626432	2.0884	1.29025	1.99754	1.64845	2.51652	1.46337	0	0.951479	5.80766	0.820337	1.78988	0.949495
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064617 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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