TCONS_00064618 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064618
Unique NameTCONS_00064618
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length380

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064618 ID=TCONS_00064618|Name=TCONS_00064618|organism=Clytia hemisphaerica|type=transcript|length=380bp
ATTAACTGTCCAATCGTCTGTATTTGTAAGTGATATTTTAcatgagaaaa
attcacttttcatcgCTCTAACTGAGACATGGCTTGCTGATGCAGAAGTT
GAAATTAACGACTACTTCCTAATTAGAGATGATAGATCACGaaccaaaaa
gaaatatggtcGACACAGTGGAGGAGTAGCACTTTACATTAGAAACGACA
TCAGTTCAACCTTTAAACCAGTGTTGGAGTATTCAAACGGTGTGAATGGA
CTGCTAACTGTTCACTCCAAGAAAGTAAACATATTGATATCTGTTATTTA
TCGACAACCAGATGACTCATCTCACGGTCATCCATCAACCTcgaaagaat
tttctgaaatattaaaaaagatgGGAGATA
Run BLAST on NCBI

protein sequence of TCONS_00064618-protein

>TCONS_00064618-protein ID=TCONS_00064618-protein|Name=TCONS_00064618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
LTVQSSVFVSDILHEKNSLFIALTETWLADAEVEINDYFLIRDDRSRTKK
KYGRHSGGVALYIRNDISSTFKPVLEYSNGVNGLLTVHSKKVNILISVIY
RQPDDSSHGHPSTSKEFSEILKKMGD
Run BLAST on NCBI

transcript from alignment at scaffold_419:376493..376872

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064618 ID=TCONS_00064618|Name=TCONS_00064618|organism=Clytia hemisphaerica|type=transcript|length=380bp|location=Sequence derived from alignment at scaffold_419:376493..376872 (Clytia hemisphaerica)
TATCTCCcatcttttttaatatttcagaaaattctttcgAGGTTGATGGA
TGACCGTGAGATGAGTCATCTGGTTGTCGATAAATAACAGATATCAATAT
GTTTACTTTCTTGGAGTGAACAGTTAGCAGTCCATTCACACCGTTTGAAT
ACTCCAACACTGGTTTAAAGGTTGAACTGATGTCGTTTCTAATGTAAAGT
GCTACTCCTCCACTGTGTCgaccatatttctttttggttCGTGATCTATC
ATCTCTAATTAGGAAGTAGTCGTTAATTTCAACTTCTGCATCAGCAAGCC
ATGTCTCAGTTAGAGcgatgaaaagtgaatttttctcatgTAAAATATCA
CTTACAAATACAGACGATTGGACAGTTAAT

Coding sequence (CDS) from alignment at scaffold_419:376493..376872

>TCONS_00064618 ID=TCONS_00064618|Name=TCONS_00064618|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_419:376493..376872 (Clytia hemisphaerica)
ATCTCCcatcttttttaatatttcagaaaattctttcgAGGTTGATGGAT
GACCGTGAGATGAGTCATCTGGTTGTCGATAAATAACAGATATCAATATG
TTTACTTTCTTGGAGTGAACAGTTAGCAGTCCATTCACACCGTTTGAATA
CTCCAACACTGGTTTAAAGGTTGAACTGATGTCGTTTCTAATGTAAAGTG
CTACTCCTCCACTGTGTCgaccatatttctttttggttCGTGATCTATCA
TCTCTAATTAGGAAGTAGTCGTTAATTTCAACTTCTGCATCAGCAAGCCA
TGTCTCAGTTAGAGcgatgaaaagtgaatttttctcatgTAAAATATCAC
TTACAAATACAGACGATTGGACAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040527XLOC_040527Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064618-proteinTCONS_00064618-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064618-exon-scaffold_419-1491911889:376493..376872TCONS_00064618-exon-scaffold_419-1491911889:376493..376872Clytia hemisphaericaexon
TCONS_00064618-exon-scaffold_419-1510915933:376493..376872TCONS_00064618-exon-scaffold_419-1510915933:376493..376872Clytia hemisphaericaexon
TCONS_00064618-exon-scaffold_419-1575043694:376493..376872TCONS_00064618-exon-scaffold_419-1575043694:376493..376872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:376493..376872 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.622417	0.809272	0.704732	1.37894	6.28092	9.38803	6.93519	8.94562	1.22383	3.35306	3.29339	0.824955	2.06975	1.00308	0	0.252855	0	0.159637	0.220548	0.230787	1.20358	0.587062	0	0.216271	1.33652	7.32401	0	0	0	0.469234
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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