TCONS_00064585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064585
Unique NameTCONS_00064585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064585 ID=TCONS_00064585|Name=TCONS_00064585|organism=Clytia hemisphaerica|type=transcript|length=447bp
AAGGGTACGGTGTGTCAGGTCCAAGGTCTACTGTCGTTGTTGTAGGTCCA
GTAGTTGTTGTAGTGGTGGAAGGCGGTGGGGTGGTTGTCGTGGTTGTAGT
AGTAGTAGGCGGTGGTGTGGTTGTAGTGGTAGTTGTGGTTGGTAAGGTGG
TTGTGGTCGTTGTTATTGTGGTGGTTGTAGGTTTCGGAGTTGTAGTTGTA
GTTGTTGTGGATGAAGTTGTTGTTGTACTTGTGGTTGTTGTCGTGGTTGA
TTGAGcagttgttgttgtggttgtttTGATTTCGCTCTTAATGAGTGTTA
TAGTAGTTGATATAGCTGTTGTGGAGATAATGGTTGTCGTAGACGTTTCT
AAAGTTGTTGTCTGGATAGTGGTTCCAGCTTGGGTTGTACTGATACGTGT
TGTTGTGGTCAAAGATGTGGTAGTGATAGTGGTATTGATATCACTNN
Run BLAST on NCBI

transcript from alignment at scaffold_419:416938..417492-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064585 ID=TCONS_00064585|Name=TCONS_00064585|organism=Clytia hemisphaerica|type=transcript|length=555bp|location=Sequence derived from alignment at scaffold_419:416938..417492- (Clytia hemisphaerica)
AAGGGTACGGTGTGTCAGGTCCAAGGTCTACTGTCGTTGTTGTAGGTCCA
GTAGTTGTTGTAGTGGTGGAAGGCGGTGGGGTGGTTGTCGTGGTTGTAGT
AGTAGTAGGCGGTGGTGTGGTTGTCGTGGTTGTAGTAGTGGTAGACGGTG
GTGTGGTTGTCGTGGTTGTAGAAGTGGTAGGCGGCGGTGTGGTTGTCGTG
GTTGTAGAAGTGGTAGGCGGTGGTGTGGTTGTAGTGGTAGTTGTGGTTGG
TAAGGTGGTTGTGGTCGTTGTTATTGTGGTGGTTGTAGGTTTCGGAGTTG
TAGTTGTAGTTGTTGTGGATGAAGTTGTTGTTGTACTTGTGGTTGTTGTC
GTGGTTGATTGAGCAGTTGTTGTTGTGGTTGTTTTGATTTCGCTCTTAAT
GAGTGTTATAGTAGTTGATATAGCTGTTGTGGAGATAATGGTTGTCGTAG
ACGTTTCTAAAGTTGTTGTCTGGATAGTGGTTCCAGCTTGGGTTGTACTG
ATACGTGTTGTTGTGGTCAAAGATGTGGTAGTGATAGTGGTATTGATATC
ACTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040501XLOC_040501Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064585-exon-scaffold_419-1575043694:417385..417492TCONS_00064585-exon-scaffold_419-1575043694:417385..417492Clytia hemisphaericaexon
TCONS_00064585-exon-scaffold_419-1575043694:416938..417276TCONS_00064585-exon-scaffold_419-1575043694:416938..417276Clytia hemisphaericaexon
TCONS_00064585-exon-scaffold_419-1510915933:417385..417492TCONS_00064585-exon-scaffold_419-1510915933:417385..417492Clytia hemisphaericaexon
TCONS_00064585-exon-scaffold_419-1510915933:416938..417276TCONS_00064585-exon-scaffold_419-1510915933:416938..417276Clytia hemisphaericaexon
TCONS_00064585-exon-scaffold_419-1491911889:417385..417492TCONS_00064585-exon-scaffold_419-1491911889:417385..417492Clytia hemisphaericaexon
TCONS_00064585-exon-scaffold_419-1491911889:416938..417276TCONS_00064585-exon-scaffold_419-1491911889:416938..417276Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:416938..417492 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.66126	3.86095	2.13032	1.6234	6.31468	4.72681	5.527	7.64442	3.92118	4.77103	3.04881	1.60672	2.16852	1.16433	1.42736	1.93089	1.76263	2.89509	0.872462	0	1.00217	0	2.79151	1.92448	77.3124	63.6327	0.357908	0.367111	2.64651	4.57375
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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