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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064628 ID=TCONS_00064628|Name=TCONS_00064628|organism=Clytia hemisphaerica|type=transcript|length=1418bp
TTTCagtgatcaaaaataaaaaaggataaATATGAGTGTAACAGACAGAA
AGAAACCTCAACAACCTGAAGAATTCAGTTGGCGTAAAGCGGCCGTACGC
GCGTCGTATGAGAGCGCCACTTTTGTGATCACCAGATATCCTTACCTTTG
TGCAGTGCTTTTGATGGTGACAACCGCCGAGGAAGCCAAAGAGAAGAAGG
TCGTGCGTGGTTCGTTGAAGTATCGGATGGCTTACATTCACTTAGGTTCT
TACTTTGTGTGTGGAACCATCATGGCCTTTGATTTGTTCGGGCTGAAACG
TTTCTTCGCCGCCCTGACGTGTGTTCATCTAACGGTTGTCTCGTACACTG
AATATACGTTGGGATACGGTGAACAAATCGCGTACCGGATGTTGACGCGA
AACGTGGCATGCATCGGTTGCTTCTTGATGGTGGCTGGTGGTATTGCAAA
GAATAAAGGTGAAGGAGATAAGAGCGCGCGCTTGATTACGTTCGGACGTC
AGATGATAGGCGTCTATGCTGTGTTGTCGGTCGTTCTGACGTGGCACGAT
AAGAAGGAGTTTGCGGCGTACACACATCATCTGTTTAAAGATCCCCTCGT
TACTTATGCAGTCATGATTCTCCAATTAGTGCTCGGATTGTGTTTATACA
CAGGTTATAATGTTGTCCAGTTCAGTAAATATTACGCCATCTTGATCCTT
GGGTTAACTGTTCTTATTGACGCCGATCTTAAGTATTGGGCGAGAAATAC
GGGCGTTAAGACATGGGGGACAGCCACTATCGCATGTCGGCATCTTCCAG
TCTTGTGTGGTCTGTTACTGATCAGGAAAGGATATTCTTGAAGTTCAATG
GTGAGGATGATTTTTAAATCAACACACGGACATTATTAACCGTGATTGTG
Cccgaaagacaaaaaaaaatatttcgacattgaaaatcttttagaaaatg
aatacaatGATTTTACCCTccctttcatttcattggaAAATTTCACATCA
ACGGTTTTTGCCGTCATGACAATAGAcattatcggagtttttgatttttt
gcattcGTATTACAATataaatctcttaggaattcctcgagggagttcta
ttgtaatactcccgaaaaaatcccacaatgcatcgcttttttagaaaaat
aaagaactcCGGTAAGATCTATAAAAAGAGACTTTCAATTTATATTATTT
ACGATGTATATTTTCAGgggtttttatttatttttcgatgGATAGTTTTT
TATGTTAGATTTAACCAGtagttttattttctaaatttcgcttttagaat
tttattttgaattcaaGATTTATAGCACTAGAAAAATTATGATTCATCTA
AATAAGAATTCTCATGGGGAGTAGTATGCCAGCTGTATCGGTCTTTTTGT
GTCATTCTAGCATTCGTG Run BLAST on NCBI protein sequence of TCONS_00064628-protein >TCONS_00064628-protein ID=TCONS_00064628-protein|Name=TCONS_00064628-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MSVTDRKKPQQPEEFSWRKAAVRASYESATFVITRYPYLCAVLLMVTTAE
EAKEKKVVRGSLKYRMAYIHLGSYFVCGTIMAFDLFGLKRFFAALTCVHL
TVVSYTEYTLGYGEQIAYRMLTRNVACIGCFLMVAGGIAKNKGEGDKSAR
LITFGRQMIGVYAVLSVVLTWHDKKEFAAYTHHLFKDPLVTYAVMILQLV
LGLCLYTGYNVVQFSKYYAILILGLTVLIDADLKYWARNTGVKTWGTATI
ACRHLPVLCGLLLIRKGYS Run BLAST on NCBI transcript from alignment at scaffold_419:522299..523716 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064628 ID=TCONS_00064628|Name=TCONS_00064628|organism=Clytia hemisphaerica|type=transcript|length=1418bp|location=Sequence derived from alignment at scaffold_419:522299..523716 (Clytia hemisphaerica)
CACGAATGCTAGAATGACACAAAAAGACCGATACAGCTGGCATACTACTC
CCCATGAGAATTCTTATTTAGATGAATCATAATTTTTCTAGTGCTATAAA
TCttgaattcaaaataaaattctaaaagcgaaatttagaaaataaaacta
CTGGTTAAATCTAACATAAAAAACTATCcatcgaaaaataaataaaaacc
cCTGAAAATATACATCGTAAATAATATAAATTGAAAGTCTCTTTTTATAG
ATCTTACCGgagttctttatttttctaaaaaagcgatgcattgtgggatt
ttttcgggagtattacaatagaactccctcgaggaattcctaagagattt
atATTGTAATACgaatgcaaaaaatcaaaaactccgataatgTCTATTGT
CATGACGGCAAAAACCGTTGATGTGAAATTTtccaatgaaatgaaagggA
GGGTAAAATCattgtattcattttctaaaagattttcaatgtcgaaatat
ttttttttgtctttcggGCACAATCACGGTTAATAATGTCCGTGTGTTGA
TTTAAAAATCATCCTCACCATTGAACTTCAAGAATATCCTTTCCTGATCA
GTAACAGACCACACAAGACTGGAAGATGCCGACATGCGATAGTGGCTGTC
CCCCATGTCTTAACGCCCGTATTTCTCGCCCAATACTTAAGATCGGCGTC
AATAAGAACAGTTAACCCAAGGATCAAGATGGCGTAATATTTACTGAACT
GGACAACATTATAACCTGTGTATAAACACAATCCGAGCACTAATTGGAGA
ATCATGACTGCATAAGTAACGAGGGGATCTTTAAACAGATGATGTGTGTA
CGCCGCAAACTCCTTCTTATCGTGCCACGTCAGAACGACCGACAACACAG
CATAGACGCCTATCATCTGACGTCCGAACGTAATCAAGCGCGCGCTCTTA
TCTCCTTCACCTTTATTCTTTGCAATACCACCAGCCACCATCAAGAAGCA
ACCGATGCATGCCACGTTTCGCGTCAACATCCGGTACGCGATTTGTTCAC
CGTATCCCAACGTATATTCAGTGTACGAGACAACCGTTAGATGAACACAC
GTCAGGGCGGCGAAGAAACGTTTCAGCCCGAACAAATCAAAGGCCATGAT
GGTTCCACACACAAAGTAAGAACCTAAGTGAATGTAAGCCATCCGATACT
TCAACGAACCACGCACGACCTTCTTCTCTTTGGCTTCCTCGGCGGTTGTC
ACCATCAAAAGCACTGCACAAAGGTAAGGATATCTGGTGATCACAAAAGT
GGCGCTCTCATACGACGCGCGTACGGCCGCTTTACGCCAACTGAATTCTT
CAGGTTGTTGAGGTTTCTTTCTGTCTGTTACACTCATATttatccttttt
tatttttgatcactGAAA Coding sequence (CDS) from alignment at scaffold_419:522299..523716 >TCONS_00064628 ID=TCONS_00064628|Name=TCONS_00064628|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_419:522299..523716 (Clytia hemisphaerica)
TCAAGAATATCCTTTCCTGATCAGTAACAGACCACACAAGACTGGAAGAT
GCCGACATGCGATAGTGGCTGTCCCCCATGTCTTAACGCCCGTATTTCTC
GCCCAATACTTAAGATCGGCGTCAATAAGAACAGTTAACCCAAGGATCAA
GATGGCGTAATATTTACTGAACTGGACAACATTATAACCTGTGTATAAAC
ACAATCCGAGCACTAATTGGAGAATCATGACTGCATAAGTAACGAGGGGA
TCTTTAAACAGATGATGTGTGTACGCCGCAAACTCCTTCTTATCGTGCCA
CGTCAGAACGACCGACAACACAGCATAGACGCCTATCATCTGACGTCCGA
ACGTAATCAAGCGCGCGCTCTTATCTCCTTCACCTTTATTCTTTGCAATA
CCACCAGCCACCATCAAGAAGCAACCGATGCATGCCACGTTTCGCGTCAA
CATCCGGTACGCGATTTGTTCACCGTATCCCAACGTATATTCAGTGTACG
AGACAACCGTTAGATGAACACACGTCAGGGCGGCGAAGAAACGTTTCAGC
CCGAACAAATCAAAGGCCATGATGGTTCCACACACAAAGTAAGAACCTAA
GTGAATGTAAGCCATCCGATACTTCAACGAACCACGCACGACCTTCTTCT
CTTTGGCTTCCTCGGCGGTTGTCACCATCAAAAGCACTGCACAAAGGTAA
GGATATCTGGTGATCACAAAAGTGGCGCTCTCATACGACGCGCGTACGGC
CGCTTTACGCCAACTGAATTCTTCAGGTTGTTGAGGTTTCTTTCTGTCTG
TTACACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064628-exon-scaffold_419-1491911889:522299..523716 | TCONS_00064628-exon-scaffold_419-1491911889:522299..523716 | Clytia hemisphaerica | exon |
| TCONS_00064628-exon-scaffold_419-1510915933:522299..523716 | TCONS_00064628-exon-scaffold_419-1510915933:522299..523716 | Clytia hemisphaerica | exon |
| TCONS_00064628-exon-scaffold_419-1575043694:522299..523716 | TCONS_00064628-exon-scaffold_419-1575043694:522299..523716 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_419 | supercontig | scaffold_419:522299..523716 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029371 | TMEM101 |
Blast
BLAST of TCONS_00064628 vs. Swiss-Prot (Human)
Match: TM101 (Transmembrane protein 101 OS=Homo sapiens GN=TMEM101 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.168e-19 Identity = 60/231 (25.97%), Postives = 113/231 (48.92%), Query Frame = 2
Query: 83 RKAAVRASYESATFVITRYPYLCAVLLMVTTAEEAKEKKVVRGSLKYRMAYIHLGSYFVCGTIMAFDLFGLKRFFAALTCVHLTVVSYTEYTLGY---GEQIAYRMLTRNVACIGCFLMVAGGIAKNKGEGDKSARLITFGRQMIGVYAVLSVVLTWHDKKEFAAYTHHLFKDPLVTYAVMILQLVLGLCLYTGYNVVQFSKYYAILILGLTVLIDADLKYWARNTGVKTW 766
R+ ++ + + ++TR P+ ++ AE A+ ++ + Y Y +G+ +C + M+F + +R+FA + L + +Y Y GY G+ + RM +R VA IG FL++A G + +S L + G+ +G+Y + H K++ AY +HL L+ +L +L L +GY V ++ A+L+ + +LID ++ YW V+ W
Sbjct: 8 RRWMLQLIMQLGSVLLTRCPFWGCFSQLMLYAERAEARRKPDIPVPY--LYFDMGAAVLCASFMSFGV--KRRWFALGAALQLAISTYAAYIGGYVHYGDWLKVRMYSRTVAIIGGFLVLASGAGELYRRKPRSRSLQSTGQVFLGIYLICVAYSLQHSKEDRLAYLNHLPGGELMIQLFFVLYGILALAFLSGYYVTLAAQILAVLLPPVMLLIDGNVAYWHNTRRVEFW 234
The following BLAST results are available for this feature:
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