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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064668 ID=TCONS_00064668|Name=TCONS_00064668|organism=Clytia hemisphaerica|type=transcript|length=1992bpRun BLAST on NCBI transcript from alignment at scaffold_420:262585..269389- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064668 ID=TCONS_00064668|Name=TCONS_00064668|organism=Clytia hemisphaerica|type=transcript|length=6805bp|location=Sequence derived from alignment at scaffold_420:262585..269389- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064668 vs. Swiss-Prot (Human)
Match: MRC1 (Macrophage mannose receptor 1 OS=Homo sapiens GN=MRC1 PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 1.159e-31 Identity = 138/604 (22.85%), Postives = 216/604 (35.76%), Query Frame = 3
Query: 6 YIGGTDAGSEGKWRWNDGTAMAYKKWLPNEPNNKNGKEHCMHLWKS-NTGWNDIFCGNKYNFVCKMSQFHGKVYYVST-------------------------VKKNHDQAESHCKTMGGNLVTIHSQAENDYVHKMAKSRGYLDVFIGLRDVNKNGQFSWVDGSKVVFTDWQNGEPNFKG--KENCAVYQHINLAKHG-WNNIYCSGVKQYICKYQPDILVYTSESLCPKERGFCVRSDGADQNSGVIKVNALDGNTDQHQKDCLKKCHAHKGATGCEVIWNQHNRGCYIHTQSIARGNNVDRHYCWVFSKCAQGDKFVPHGEASYYFSDNKVNYNDADAACHHIGGFLASVHSAAENKFISDEAKRRKLGNVWIGGNDKSREGSWVWNDLTPFSYKNWAKNEPNNAGKGEDCPEM---YGTGHWNDHYCDQKKAFVCK----------------------------------ILYFKGNRYFISSAKKNWYDAEKFCAIFDGHLTSIHSKEENDYIYNQLVKRKIKHPF--AGLNDQKQEGKWVWSDGSEVDYLAWSHREPNNLRN-EDCMHVKWKST-KWNDIKCMNKYQFVCKF*ILMTP 1607
+IG W+W+D + Y WLP P+ + GK C+ L N W ++ C K ++CK + + + KK A + C+ GG+L +IH+ E D++ +++IGL D+ F W DG+ V FT W GEP+ + +E+C V + K G W + C YICK + RS G + +++V GC W +H+ CY+ +++ F++ Q C++ +L ++ E F++ R W G +D +G++ W + +W + P G+ C M G W+ CD+K FVCK LY KG KK W+++ FC G L SI++KEE I+ + H GL + WSDGS V Y W++ EPNN +N E C +K T WNDI C + ++C+ TP
Sbjct: 278 WIGLNSLSFNSGWQWSDRSPFRYLNWLPGSPSAEPGKS-CVSLNPGKNAKWENLECVQKLGYICKKGNTTLNSFVIPSESDVPTHCPSQWWPYAGHCYKIHRDEKKIQRDALTTCRKEGGDLTSIHTIEELDFIISQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTFTKWLRGEPSHENNRQEDCVVMK----GKDGYWADRGCEWPLGYICKMKS-------------------RSQGPE----IVEVEK-----------------------GCRKGWKKHHFYCYMIGHTLS-----------TFAEANQ--------------------------TCNNENAYLTTIEDRYEQAFLTSFVGLRPEKYFWTGLSDIQTKGTFQWTIEEEVRFTHWNSDMP---GRKPGCVAMRTGIAGGLWDVLKCDEKAKFVCKHWAEGVTHPPKPTTTPEPKCPEDWGASSRTSLCFKLYAKGKH-----EKKTWFESRDFCRALGGDLASINNKEEQQTIWRLITASGSYHKLFWLGLTYGSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTMSWNDINCEHLNNWICQIQKGQTP 785 HSP 2 Score: 100.138 bits (248), Expect = 1.609e-21 Identity = 78/280 (27.86%), Postives = 123/280 (43.93%), Query Frame = 3
Query: 867 DKFVPHGEASYYFSDNKVNYNDADAACHHIGGFLASVHSAAENKFISDEAKRRKLGNVWIGGNDKSREGSWVWNDLTPFSYKNWAKNEPNNAGKGEDCPEMYG-TGHWNDHYCDQKKAFVCK----------ILY--------------FKGNRYF-----ISSAKKNWYDAEKFCAIFDGHLTSIHSKEENDYIYNQLVKRKIKHPFAGLNDQKQEGKWVWSDGSEVDYLAWSHREPNNLRNE------DCMHVKWKST----KWNDIKCMNKYQFVCK 1586
D +V + + YYFS K ++A A C G L S+ S +E KF+ R + + G S + + W D + Y +WA EPN A + E+C MY +G WND C AF+C+ ++ F N+ F + +KNW +A K C F G+L SI +++E ++ + K + GLND E ++W+DG V Y W P R+ DC+ + ++ KW D C +K ++C+
Sbjct: 802 DGWVIYKDYQYYFSKEKETMDNARAFCKRNFGDLVSIQSESEKKFLWKYVNRNDAQSAYFIGLLISLDKKFAWMDGSKVDYVSWATGEPNFANEDENCVTMYSNSGFWNDINCGYPNAFICQRHNSSINATTVMPTMPSVPSGCKEGWNFYSNKCFKIFGFMEEERKNWQEARKACIGFGGNLVSIQNEKEQAFLTYHM-KDSTFSAWTGLNDVNSEHTFLWTDGRGVHYTNWGKGYPGGRRSSLSYEDADCVVIIGGASNEAGKWMDDTCDSKRGYICQ 1080 HSP 3 Score: 99.7525 bits (247), Expect = 2.067e-21 Identity = 74/247 (29.96%), Postives = 115/247 (46.56%), Query Frame = 3
Query: 945 CHHIGGFLASVHSAAEN----KFISDEAKRRKLGNVWIGGNDKSREGSWVWNDLTPFSYKNWAKNEPNNAGKGEDCPEMYG--TGHWNDHYCDQKKAFVCKI-------------------------LYFKGNRYFISSAKKNWYDAEKFCAIFDGHLTSIHSKEENDYIYNQLVKRKIKHP-FAGLNDQKQEGKWVWSDGSEVDYLAWSHREPNNL-RNEDCMHVKWKSTKWNDIKCMNKYQFVCK 1586
C +GG LAS+++ E + I+ KL W+G S + W+D +P SY+NWA EPNN E C E+ G T WND C+ ++C+I + +K +Y+ S K+ +A FC G L SI S+ E +++ + + + F GL + K+ W DGS+VDY++W+ EPN +E+C+ + S WNDI C F+C+
Sbjct: 680 CRALGGDLASINNKEEQQTIWRLITASGSYHKL--FWLGLTYGSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTMSWNDINCEHLNNWICQIQKGQTPKPEPTPAPQDNPPVTEDGWVIYKDYQYYFSKEKETMDNARAFCKRNFGDLVSIQSESEKKFLWKYVNRNDAQSAYFIGLL-ISLDKKFAWMDGSKVDYVSWATGEPNFANEDENCVTMYSNSGFWNDINCGYPNAFICQ 923 HSP 4 Score: 99.7525 bits (247), Expect = 2.121e-21 Identity = 78/267 (29.21%), Postives = 110/267 (41.20%), Query Frame = 3
Query: 879 PHGEASYYF-SDNKVNYNDADAACHHIGGFLASVHSAAENKFISDEAKRRKLGNVWIGGNDKSREGSWVWNDLTPFSYKNWAKNEPNNAGKGEDCPEMYG--TGHWNDHYCDQKKAFVCKILYFKGNRYFISS-------------------------AKKNWYDAEKFCAIFDGHLTSIHSKEENDYIYNQLVKRKIKHPFAGLNDQKQEGKWVWSDGSEVDYLAWSHREPN--NLRNEDCMHVKWKSTKWNDIKCMNKYQFVCKF 1589
P SY S + + ++ A +C L S+ E +++ G +WIG N S W W+D +PF Y NW P +A G+ C + W + C QK ++CK N + I S KK DA C G LTSIH+ EE D+I +QL + GLND K + + WSDG+ V + W EP+ N R EDC+ +K K W D C ++CK
Sbjct: 224 PLTSVSYQINSKSALTWHQARKSCQQQNAELLSITEIHEQTYLTGLTSSLTSG-LWIGLNSLSFNSGWQWSDRSPFRYLNWLPGSP-SAEPGKSCVSLNPGKNAKWENLECVQKLGYICKKGNTTLNSFVIPSESDVPTHCPSQWWPYAGHCYKIHRDEKKIQRDALTTCRKEGGDLTSIHTIEELDFIISQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTFTKWLRGEPSHENNRQEDCVVMKGKDGYWADRGCEWPLGYICKM 488 HSP 5 Score: 91.2781 bits (225), Expect = 7.565e-19 Identity = 62/213 (29.11%), Postives = 101/213 (47.42%), Query Frame = 3
Query: 6 YIGGTDAGSEGKWRWNDGTAMAYKKWLPNEPNNKNGKEHCMHLWKSNT-GWNDIFCGNKYNFVCKMSQ-------------------------FHGKVYYVSTVKKNHDQAESHCKTMGGNLVTIHSQAENDYVHKMA-KSRGYLDVFIGLRDVNKNGQFSWVDGSKVVFTDWQNGEPNFKGKENCAVYQHINLAKHGWNNIYCSGVKQYICK 563
++G T + W+DG+ ++Y+ W EPNN E+C L T WNDI C + N++C++ + + YY S K+ D A + CK G+LV+I S++E ++ K ++ FIGL ++ + +F+W+DGSKV + W GEPNF ++ V + N WN+I C +IC+
Sbjct: 714 WLGLTYGSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTMSWNDINCEHLNNWICQIQKGQTPKPEPTPAPQDNPPVTEDGWVIYKDYQYYFSKEKETMDNARAFCKRNFGDLVSIQSESEKKFLWKYVNRNDAQSAYFIGLL-ISLDKKFAWMDGSKVDYVSWATGEPNFANEDENCVTMYSN--SGFWNDINCGYPNAFICQ 923 HSP 6 Score: 90.1225 bits (222), Expect = 1.684e-18 Identity = 70/269 (26.02%), Postives = 114/269 (42.38%), Query Frame = 3
Query: 861 QGDKFVPHGEASYYFSDNKVNYNDADAACHHIGGFLASVHSAAENKF--ISDEAKRRKLGNVWIGGNDKSREGSWVWNDLTPFSYKNWAKNEPNNAGKGEDCPEMYGTGHWNDHYCDQKKAFVCKI------------------------LYFKGNRYFI-SSAKKNWYDAEKFCAIFDGHLTSIHSKEENDYIYNQLVKRKIKHPFAGLNDQKQEGKWVWSDGSEVDYLAWSHREPNNLRNEDCMHVKWKSTKWNDIKCMNKYQFVCK 1586
Q D FV +G++SY K +++A+ C +AS+ N F + E + VWI N + + W D Y NWA +EP C + G+W +C++ F+CK + F G+ Y+I SS +NW A C L SI S E+ ++ ++ K K F + EG W+W + S V ++ W+ +P+ RN DC+ + S W++I C + ++CK
Sbjct: 1095 QTDGFVKYGKSSYSLMRQKFQWHEAETYCKLHNSLIASILDPYSNAFAWLQMETSNER---VWIALNSNLTDNQYTWTDKWRVRYTNWAADEPKLKSA---CVYLDLDGYWKTAHCNESFYFLCKRSDEIPATEPPQLPGRCPESDHTAWIPFHGHCYYIESSYTRNWGQASLECLRMGSSLVSIESAAESSFLSYRVEPLKSKTNFWIGLFRNVEGTWLWINNSPVSFVNWNTGDPSGERN-DCVALHASSGFWSNIHCSSYKGYICK 1356 The following BLAST results are available for this feature:
BLAST of TCONS_00064668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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