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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064673 ID=TCONS_00064673|Name=TCONS_00064673|organism=Clytia hemisphaerica|type=transcript|length=2554bpRun BLAST on NCBI transcript from alignment at scaffold_420:262585..272433- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064673 ID=TCONS_00064673|Name=TCONS_00064673|organism=Clytia hemisphaerica|type=transcript|length=9849bp|location=Sequence derived from alignment at scaffold_420:262585..272433- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064673 vs. Swiss-Prot (Human)
Match: MRC1 (Macrophage mannose receptor 1 OS=Homo sapiens GN=MRC1 PE=1 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 6.377e-47 Identity = 139/552 (25.18%), Postives = 240/552 (43.48%), Query Frame = 1
Query: 712 KKTFAEAEDYCQSIGGHLASIHSKEENDFVLKEAQNRGLVHP--YIGGTDAGSEGKWRWNDGTAMAYKKWLPNEPNNKNGKEHCMHLWKSNT-GWNDIFCGNKYNFVCKMSQ-------------------------FHGKVYYVSTVKKNHDQAESHCKTMGGNLVTIHSQAENDYVHK-MAKSRGYLDVFIGLRDVNKNGQFSWVDGSKVVFTDWQNGEPNFKGKENCAVYQHINLAKHGWNNIYCSGVKQYICKYQPDILVYTSGDKFVPHGEASY----------------YFSDNKVNYNDADAACHHIGGFLASVHSAAENKFISDEAKRRKLGNVWIGGNDKSREGSWVWNDLTPFSYKNWAKNEPNN-----AGKGEDCPEMYG-----TGHWNDHYCDQKKAFVCK------------------ILYFKGNRYFISSAKKNWYDAEKFCAIFDGHLTSIHSKEENDYIYNQLVKRKIKHPFAGLNDQKQEGKWVWSDGSEVDYLAWSHREPNNLRNEDCMHVKWKSTKWNDIKCMNKYQFVCK 2148
KKT+ E+ D+C+++GG LASI++KEE + + G H ++G T + W+DG+ ++Y+ W EPNN E+C L T WNDI C + N++C++ + + YY S K+ D A + CK G+LV+I S++E ++ K + ++ FIGL ++ + +F+W+DGSKV + W GEPNF ++ V + N WN+I C +IC+ + T+ +P + + + + N+ +A AC GG L S+ + E F++ K + W G ND + E +++W D Y NW K P + + DC + G G W D CD K+ ++C+ + + + Y + K W++AE +C + + + SI N + + Q+ + + + LN + ++ W+D V Y W+ EP C+++ W C + F+CK
Sbjct: 670 KKTWFESRDFCRALGGDLASINNKEEQQTIWRLITASGSYHKLFWLGLTYGSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTMSWNDINCEHLNNWICQIQKGQTPKPEPTPAPQDNPPVTEDGWVIYKDYQYYFSKEKETMDNARAFCKRNFGDLVSIQSESEKKFLWKYVNRNDAQSAYFIGLL-ISLDKKFAWMDGSKVDYVSWATGEPNFANEDENCVTMYSN--SGFWNDINCGYPNAFICQRHNSSINATTVMPTMPSVPSGCKEGWNFYSNKCFKIFGFMEEERKNWQEARKACIGFGGNLVSIQNEKEQAFLTYHMKDSTF-SAWTGLNDVNSEHTFLWTDGRGVHYTNWGKGYPGGRRSSLSYEDADCVVIIGGASNEAGKWMDDTCDSKRGYICQTRSDPSLTNPPATIQTDGFVKYGKSSYSLMRQKFQWHEAETYCKLHNSLIASILDPYSNAFAWLQM-ETSNERVWIALNSNLTDNQYTWTDKWRVRYTNWAADEPK--LKSACVYLDLDG-YWKTAHCNESFYFLCK 1213 HSP 2 Score: 180.644 bits (457), Expect = 1.513e-46 Identity = 149/582 (25.60%), Postives = 234/582 (40.21%), Query Frame = 1
Query: 622 EPSEVRQCQLAVCKPALVKRGELIYHFSSAKKTFAEAEDYCQSIGGHLASIHSKEENDFVLKEAQNRGLVHPYIGGTDAGSEGKWRWNDGTAMAYKKWLPNEPNNKNGKEHCMHLWKSNTGWNDIFCGNKYNFVCKMSQFHGKVYYVSTV--------------------------------KKNHDQAESHCKTMGGNLVTIHSQAENDYVHKMAKSRGYLDVFIGLRDVNKNGQFSWVDGSKVVFTDWQNGEPNFKGKENCAVYQHINLA---------KHGWNNIYCSGVKQYICKYQPDILV-----YTSGDKFVPHGEASYYFSDNKVNYNDADAACHHIGGFLASVHSAAENKF--ISDEAKRRKLGNVWIGGNDKSREGSWVWNDLTPFSYKNWAKNEPNNAGKGEDCPEMYGTGHWNDHYCDQKKAFVCKI------------------------LYFKGNRYFI-SSAKKNWYDAEKFCAIFDGHLTSIHSKEENDYIYNQLVKRKIKHPFAGLNDQKQEGKWVWSDGSEVDYLAWSHREPNNLRNEDCMHVKWKSTKWNDIKCMNKYQFVCK 2148
EP+ Q V + V + Y+FS K+T A +C+ G L SI S+ E F+ K Y G + K+ W DG+ + Y W EPN N E+C+ ++ ++ WNDI CG F+C Q H +TV +KN +A C GGNLV+I ++ E ++ K + + GL DVN F W DG V +T+W G P G+ + Y+ + W + C + YIC+ + D + D FV +G++SY K +++A+ C +AS+ N F + E + VWI N + + W D Y NWA +EP C + G+W +C++ F+CK + F G+ Y+I SS +NW A C L SI S E+ ++ ++ K K F + EG W+W + S V ++ W+ +P+ RN DC+ + S W++I C + ++CK
Sbjct: 788 EPTPAPQDNPPVTEDGWVIYKDYQYYFSKEKETMDNARAFCKRNFGDLVSIQSESEKKFLWKYVNRNDAQSAYFIGLLISLDKKFAWMDGSKVDYVSWATGEPNFANEDENCVTMYSNSGFWNDINCGYPNAFIC---QRHNSSINATTVMPTMPSVPSGCKEGWNFYSNKCFKIFGFMEEERKNWQEARKACIGFGGNLVSIQNEKEQAFLTYHMKDSTF-SAWTGLNDVNSEHTFLWTDGRGVHYTNWGKGYPG--GRRSSLSYEDADCVVIIGGASNEAGKWMDDTCDSKRGYICQTRSDPSLTNPPATIQTDGFVKYGKSSYSLMRQKFQWHEAETYCKLHNSLIASILDPYSNAFAWLQMETSNER---VWIALNSNLTDNQYTWTDKWRVRYTNWAADEPKLKSA---CVYLDLDGYWKTAHCNESFYFLCKRSDEIPATEPPQLPGRCPESDHTAWIPFHGHCYYIESSYTRNWGQASLECLRMGSSLVSIESAAESSFLSYRVEPLKSKTNFWIGLFRNVEGTWLWINNSPVSFVNWNTGDPSGERN-DCVALHASSGFWSNIHCSSYKGYICK 1356 HSP 3 Score: 167.162 bits (422), Expect = 3.568e-42 Identity = 139/549 (25.32%), Postives = 228/549 (41.53%), Query Frame = 1
Query: 712 KKTFAEAEDYCQSIGGHLASIHSKEENDFVLKEAQNRGLVHPYIGGTDAGSEGKWRWNDGTAMAYKKWLPNEPNNKNGK-EHCMHLWKSNTGWNDIFCGNKYNFVCKM--------------------SQFHGKVYYVSTVKKNHDQAESHCKTMGGNLVTIHSQAENDYVHKMAKSRGYLDVFIGLRDVNKNGQFSWVDGSKVVFTDWQNGEPNFKGKENCAVYQHINLAKHGWNNIYCSGVKQYICKYQPDILVYTSG----------DKFVPHGEASYYF------SDNKVNYNDADAACHHIGGFLASVHSAAEN----KFISDEAKRRKLGNVWIGGNDKSREGSWVWNDLTPFSYKNWAKNEPNNAGKGEDCPEMYG--TGHWNDHYCDQKKAFVCKI-------------------------LYFKGNRYFISSAKKNWYDAEKFCAIFDGHLTSIHSKEENDYIYNQLVKRKIKHP-FAGLNDQKQEGKWVWSDGSEVDYLAWSHREPNNL-RNEDCMHVKWKSTKWNDIKCMNKYQFVCK 2148
KK +A C+ GG L SIH+ EE DF++ + +IG D + + W+DGT + + KWL EP+++N + E C+ + + W D C ++CKM + H Y + +A C L TI + E ++ R + GL D+ G F W +V FT W + P G++ V +A W+ + C +++CK+ + + + + + S F K + ++ C +GG LAS+++ E + I+ KL W+G S + W+D +P SY+NWA EPNN E C E+ G T WND C+ ++C+I + +K +Y+ S K+ +A FC G L SI S+ E +++ + + + F GL + K+ W DGS+VDY++W+ EPN +E+C+ + S WNDI C F+C+
Sbjct: 381 KKIQRDALTTCRKEGGDLTSIHTIEELDFIISQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTFTKWLRGEPSHENNRQEDCVVMKGKDGYWADRGCEWPLGYICKMKSRSQGPEIVEVEKGCRKGWKKHHFYCYMIGHTLSTFAEANQTCNNENAYLTTIEDRYEQAFLTSFVGLRPEKYFWTGLSDIQTKGTFQWTIEEEVRFTHWNSDMP---GRKPGCVAMRTGIAGGLWDVLKCDEKAKFVCKHWAEGVTHPPKPTTTPEPKCPEDWGASSRTSLCFKLYAKGKHEKKTWFESRDFCRALGGDLASINNKEEQQTIWRLITASGSYHKL--FWLGLTYGSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTMSWNDINCEHLNNWICQIQKGQTPKPEPTPAPQDNPPVTEDGWVIYKDYQYYFSKEKETMDNARAFCKRNFGDLVSIQSESEKKFLWKYVNRNDAQSAYFIGLL-ISLDKKFAWMDGSKVDYVSWATGEPNFANEDENCVTMYSNSGFWNDINCGYPNAFICQ 923 HSP 4 Score: 161.77 bits (408), Expect = 1.684e-40 Identity = 146/568 (25.70%), Postives = 224/568 (39.44%), Query Frame = 1
Query: 703 SSAKKTFAEAEDYCQSIGGHLASIHSKEENDFV--LKEAQNRGLVHPYIGGTDAGSEGKWRWNDGTAMAYKKWLPNEPNNKNGKEHCMHLWKS-NTGWNDIFCGNKYNFVCKMSQ------------------------FHGKVYYV-STVKKNHDQAESHCKTMGGNLVTIHSQAENDYVHKMAKSRGYLDVFIGLRDVNKNGQFSWVDGSKVVFTDWQNGEPNFKG--KENCAVYQHINLAKHG-WNNIYCSGVKQYICKYQ-----PDILVYTSGDK--FVPHGEASYYFSDNKVNYNDADAACHHIGGFLASVHSAAENKFISDEAKRRKLGNVWIGGNDKSREGSWVWNDLTPFSYKNWAKNEPNNAGKGEDCPEM---YGTGHWNDHYCDQKKAFVCK----------------------------------ILYFKGNRYFISSAKKNWYDAEKFCAIFDGHLTSIHSKEENDYIYNQLVKRKIKHPF--AGLNDQKQEGKWVWSDGSEVDYLAWSHREPNNLRN-EDCMHVKWKST-KWNDIKCMNKYQFVCKF*ILMTP 2169
S + T+ +A CQ L SI E ++ L + GL +IG W+W+D + Y WLP P+ + GK C+ L N W ++ C K ++CK + G Y + KK A + C+ GG+L +IH+ E D++ +++IGL D+ F W DG+ V FT W GEP+ + +E+C V + K G W + C YICK + P+I+ G + + H Y + +A+ C++ +L ++ E F++ R W G +D +G++ W + +W + P G+ C M G W+ CD+K FVCK LY KG KK W+++ FC G L SI++KEE I+ + H GL + WSDGS V Y W++ EPNN +N E C +K T WNDI C + ++C+ TP
Sbjct: 234 SKSALTWHQARKSCQQQNAELLSITEIHEQTYLTGLTSSLTSGL---WIGLNSLSFNSGWQWSDRSPFRYLNWLPGSPSAEPGKS-CVSLNPGKNAKWENLECVQKLGYICKKGNTTLNSFVIPSESDVPTHCPSQWWPYAGHCYKIHRDEKKIQRDALTTCRKEGGDLTSIHTIEELDFIISQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTFTKWLRGEPSHENNRQEDCVVMK----GKDGYWADRGCEWPLGYICKMKSRSQGPEIVEVEKGCRKGWKKHHFYCYMIGHTLSTFAEANQTCNNENAYLTTIEDRYEQAFLTSFVGLRPEKYFWTGLSDIQTKGTFQWTIEEEVRFTHWNSDMP---GRKPGCVAMRTGIAGGLWDVLKCDEKAKFVCKHWAEGVTHPPKPTTTPEPKCPEDWGASSRTSLCFKLYAKGKH-----EKKTWFESRDFCRALGGDLASINNKEEQQTIWRLITASGSYHKLFWLGLTYGSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTMSWNDINCEHLNNWICQIQKGQTP 785 HSP 5 Score: 98.2117 bits (243), Expect = 1.050e-20 Identity = 84/302 (27.81%), Postives = 132/302 (43.71%), Query Frame = 1
Query: 589 SRGGKDCSVLGEPSEVRQCQLAVCKPALVKRGELIYHFSSAKKTFAEAEDYCQSIGGHLASIHSKEENDFVLKEAQNRGLVHPYIGGTDAGSEGKWRWNDGTAMAYKKWLPNEPNNKNGKEHCMHLWKSNTGWNDIFCGNKYNFVCKMSQ------------------------FHGKVYYV-STVKKNHDQAESHCKTMGGNLVTIHSQAENDYV-HKMAKSRGYLDVFIGLRDVNKNGQFSWVDGSKVVFTDWQNGEPNFKGKENCAVYQHINLAKHG-WNNIYCSGVKQYICKYQPDIL 1413
S+ G C +PS + + VK G+ Y K + EAE YC+ +ASI N F + + +I ++ ++ W D + Y W +EP K+ C++L + W C + F+CK S FHG YY+ S+ +N QA C MG +LV+I S AE+ ++ +++ + + +IGL N G + W++ S V F +W G+P+ G+ N V H A G W+NI+CS K YICK +P I+
Sbjct: 1073 SKRGYICQTRSDPS-LTNPPATIQTDGFVKYGKSSYSLMRQKFQWHEAETYCKLHNSLIASILDPYSNAFAWLQMETSN-ERVWIALNSNLTDNQYTWTDKWRVRYTNWAADEPKLKSA---CVYL-DLDGYWKTAHCNESFYFLCKRSDEIPATEPPQLPGRCPESDHTAWIPFHGHCYYIESSYTRNWGQASLECLRMGSSLVSIESAAESSFLSYRVEPLKSKTNFWIGLFR-NVEGTWLWINNSPVSFVNWNTGDPS--GERNDCVALH---ASSGFWSNIHCSSYKGYICK-RPKII 1361 The following BLAST results are available for this feature:
BLAST of TCONS_00064673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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