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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064651 ID=TCONS_00064651|Name=TCONS_00064651|organism=Clytia hemisphaerica|type=transcript|length=1054bp
ttaatggctgaatatATTTTGTGTGCAGGAAAATATGTATTAAACACAGC
CAATATATATTAATTCGGATTTTAGGAGGTCGACAGTGAGAAAATCAGAG
ATTTATCAACTTTCTCGTTGTTGTTACcgatcttcttttttcaaaaatga
acggGAAGATCATCTCATTGTCTATCCtttgttgttttgttgtgaTTGCA
GTCAACGGGGGCCCAATATGGCCCAAAAGGTTCCAAGTAGATTTCCACGA
GGTCTTGTACAAGACATCAGAGACGATTTACCAATGCAAAGGAAGGTGGT
ATTACGATTTGACCAATCAACGCGTTCGCTTCGATCATTATCAAGGACAG
ATGGATAACTTTTGTCAAGGTCAAAACTTGAGCGTTTCCGATCCGACGGC
CGATTGTCATTTATTGTTCGCTCCGGACACATCCATGTTCGTCCATTATC
CGAACCAGAAGACATGCTGTCGGTTGTGCTTACCTGGTATTGGGTGTTCT
CCCCTCAGGTTCGATTGGATCGCCAACGCAACGATGCAGGGTACAGAGGA
GGTCGAAGGGAAAGAATGCAAAAAGTATTACGAAGAAGGAGCTGTCGCAC
ATGATTACTGGTTCGAAACGATCGATAAAAAGCCATGCCGCTACTTCGAA
CAAATTCCAAAACAAAATCCCTTCATCTTTCATAACCTGACGTTTTTCCC
GGACACATATTCTGAAGACTTGTTAGACGATTCCATATTTGAAGTTCCGA
AATATTGTCATAGAGATTGCCCGCATCCTTATCCACCACCTCATCGAAGA
TCTAATGCAGATGCGAGAGAAAGAGGAACTAtttagattttgtttttcac
TGATGTTTATCACTacttatttttaatttcgcatagcgaaagtattacga
tagccatTCTATGTATGtatcgagaaaatttttggggcgcaaatcatggc
gtgggcgtttggctgcgggcgtactacggccaatattctaaaggtggact
cactcacaaaaataaaaagtgataaaaaacagcgcttttcttaataatta
atac Run BLAST on NCBI protein sequence of TCONS_00064651-protein >TCONS_00064651-protein ID=TCONS_00064651-protein|Name=TCONS_00064651-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
MNGKIISLSILCCFVVIAVNGGPIWPKRFQVDFHEVLYKTSETIYQCKGR
WYYDLTNQRVRFDHYQGQMDNFCQGQNLSVSDPTADCHLLFAPDTSMFVH
YPNQKTCCRLCLPGIGCSPLRFDWIANATMQGTEEVEGKECKKYYEEGAV
AHDYWFETIDKKPCRYFEQIPKQNPFIFHNLTFFPDTYSEDLLDDSIFEV
PKYCHRDCPHPYPPPHRRSNADARERGTI Run BLAST on NCBI transcript from alignment at scaffold_420:311582..313525+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064651 ID=TCONS_00064651|Name=TCONS_00064651|organism=Clytia hemisphaerica|type=transcript|length=1944bp|location=Sequence derived from alignment at scaffold_420:311582..313525+ (Clytia hemisphaerica)
ttaatggctgaatatATTTTGTGTGCAGGAAAATATGTATTAAACACAGC
CAATATATATTAATTCGGATTTTAGGAGGTCGACAGTGAGAAAATCAGAG
ATTTATCAACTTTCTCGTTGTTGTTACcgatcttcttttttcaaaaatga
acggGAAGATCATCTCATTGTCTATCCtttgttgttttgttgtgaTTGCA
GTCAACGGGGGCCCAATATGGCCCAAAAGGTTCCAAGTAGATTTCCACGA
GGTCTTGTACAAGACATCAGAGACGATTTACCAATGCAAAGGAAGGTGGT
ATTACGATTTGACCAATCAACGCGTTCGCTTCGATCATTATCAAGGACAG
ATGGATAACTTTTGTCAAGGTATAAGTACTCACTAGTTGGATAATTTCTT
GATTTCTgctcaaaaagtttttcttatttataagCTTTCTGTATTACAGG
TCTCCAAACCAAACTAGGTAATTTATTCGTACAAGGTATATCATTTACTG
GGTCTTATTTATACATACAGAAATTTACATCTCTTCTTCTCCGGTTGGTA
TATTTTCCTACTATCTcgtgaaattttaaaaacaagagTTTATTGAACTC
AATAATAATGTACTATCATCTTGTTCGTGTAGTTTTGTATTAATTTTCCA
TCTTCATAATTTAATAgcatatataatataatagtCAATACTTTATCCCT
TGTAGGTCTTGTTGAATTCACTGATTATTGAGTTTTCTTCTTTACCTAAA
GGTCAAAACTTGAGCGTTTCCGATCCGACGGCCGATTGTCATTTATTGTT
CGCTCCGGACACATCCATGTTCGTCCATTATCCGAACCAGAAGACATGCT
GTCGGTTGTGCTTACCTGGTATTGGGTGTTCTCCCCTCAGGTTCGATTGG
ATCGCCAACGCAACGATGCAGGGTACAGAGGAGGTAAGCCGTGCTgatta
ttcataaaaaaatttattcgtGAAGTAATGNCACAGAGGAGGTAAGCCGT
GTTGAttattcataaaaagttttattcGTGAAGTAATGTTTTAAATGGGA
CCGGGTGATTTCTACTATTTTTGAacataaacaatgaaaatagTAACAAA
TGCCTGATCTATTAAGGTGCTTAAGAAGGTGCTTTTGGTATTCCTCAACT
ATCCTCACTTTTCTCGATCTGTCGAATATTTTACATCTTCCGAGCAGCAA
ACCTCCATTTACTTGATACTTTGTAAACCTTACTGTATTCCCTTGACAGC
CCGACATAGTCTTTTGATTCAGGTTTGCCCATTGCAGAGTTCGCAACAAA
ACCATCAAAGATTCTGAGGCAGTTTTGCGAAACTTATGTAGTCAATAAGA
ATGCGATCCAATATTCTATGCCTTGGTATTTTTAACCTCTGCTGCTTGAT
AAAATACTTTCATAGTGAAAACCATCCTCATTGTTTTTCAGGTCGAAGGG
AAAGAATGCAAAAAGTATTACGAAGAAGGAGCTGTCGCACATGATTACTG
GTTCGAAACGATCGATAAAAAGCCATGCCGCTACTTCGAACAAATTCCAA
AACAAAATCCCTTCATCTTTCATAACCTGACGTTTTTCCCGGACACATAT
TCTGAAGACTTGTTAGACGATTCCATATTTGAAGTTCCGAAATATTGTCA
TAGAGATTGCCCGCATCCTTATCCACCACCTCATCGAAGATCTAATGCAG
ATGCGAGAGAAAGAGGAACTAtttagattttgtttttcacTGATGTTTAT
CACTacttatttttaatttcgcatagcgaaagtattacgatagccatTCT
ATGTATGtatcgagaaaatttttggggcgcaaatcatggcgtgggcgttt
ggctgcgggcgtactacggccaatattctaaaggtggactcactcacaaa
aataaaaagtgataaaaaacagcgcttttcttaataattaatac Coding sequence (CDS) from alignment at scaffold_420:311582..313525+ >TCONS_00064651 ID=TCONS_00064651|Name=TCONS_00064651|organism=Clytia hemisphaerica|type=CDS|length=2070bp|location=Sequence derived from alignment at scaffold_420:311582..313525+ (Clytia hemisphaerica)
atgaacggGAAGATCATCTCATTGTCTATCCtttgttgttttgttgtgaT
TGCAGTCAACGGGGGCCCAATATGGCCCAAAAGGTTCCAAGTAGATTTCC
ACGAGGTCTTGTACAAGACATCAGAGACGATTTACCAATGCAAAGGAAGG
TGGTATTACGATTTGACCAATCAACGCGTTCGCTTCGATCATTATCAAGG
ACAGATGGATAACTTTTGTCAAGGTCAAAACTTGAGCGTTTCCGATCCGA
CGGCCGATTGTCATTTATTGTTCGCTCCGGACACATCCATGTTCGTCCAT
TATCCGAACCAGAAGACATGCTGTCGGTTGTGCTTACCTGGTATTGGGTG
TTCTCCCCTCAGGTTCGATTGGATCGCCAACGCAACGATGCAGGGTACAG
AGGAGGTCGAAGGGAAAGAATGCAAAAAGTATTACGAAGAAGGAGCTGTC
GCACATGATTACTGGTTCGAAACGATCGATAAAAAGCCATGCCGCTACTT
CGAACAAATTCCAAAACAAAATCCCTTCATCTTTCATAACCTGACGTTTT
TCCCGGACACATATTCTGAAGACTTGTTAGACGATTCCATATTTGAAGTT
CCGAAATATTGTCATAGAGATTGCCCGCATCCTTATCCACCACCTCATCG
AAGATCTAATGCAGATGCGAGAGAAAGAGGAACTAtttagatgaacggGA
AGATCATCTCATTGTCTATCCtttgttgttttgttgtgaTTGCAGTCAAC
GGGGGCCCAATATGGCCCAAAAGGTTCCAAGTAGATTTCCACGAGGTCTT
GTACAAGACATCAGAGACGATTTACCAATGCAAAGGAAGGTGGTATTACG
ATTTGACCAATCAACGCGTTCGCTTCGATCATTATCAAGGACAGATGGAT
AACTTTTGTCAAGGTCAAAACTTGAGCGTTTCCGATCCGACGGCCGATTG
TCATTTATTGTTCGCTCCGGACACATCCATGTTCGTCCATTATCCGAACC
AGAAGACATGCTGTCGGTTGTGCTTACCTGGTATTGGGTGTTCTCCCCTC
AGGTTCGATTGGATCGCCAACGCAACGATGCAGGGTACAGAGGAGGTCGA
AGGGAAAGAATGCAAAAAGTATTACGAAGAAGGAGCTGTCGCACATGATT
ACTGGTTCGAAACGATCGATAAAAAGCCATGCCGCTACTTCGAACAAATT
CCAAAACAAAATCCCTTCATCTTTCATAACCTGACGTTTTTCCCGGACAC
ATATTCTGAAGACTTGTTAGACGATTCCATATTTGAAGTTCCGAAATATT
GTCATAGAGATTGCCCGCATCCTTATCCACCACCTCATCGAAGATCTAAT
GCAGATGCGAGAGAAAGAGGAACTAtttagatgaacggGAAGATCATCTC
ATTGTCTATCCtttgttgttttgttgtgaTTGCAGTCAACGGGGGCCCAA
TATGGCCCAAAAGGTTCCAAGTAGATTTCCACGAGGTCTTGTACAAGACA
TCAGAGACGATTTACCAATGCAAAGGAAGGTGGTATTACGATTTGACCAA
TCAACGCGTTCGCTTCGATCATTATCAAGGACAGATGGATAACTTTTGTC
AAGGTCAAAACTTGAGCGTTTCCGATCCGACGGCCGATTGTCATTTATTG
TTCGCTCCGGACACATCCATGTTCGTCCATTATCCGAACCAGAAGACATG
CTGTCGGTTGTGCTTACCTGGTATTGGGTGTTCTCCCCTCAGGTTCGATT
GGATCGCCAACGCAACGATGCAGGGTACAGAGGAGGTCGAAGGGAAAGAA
TGCAAAAAGTATTACGAAGAAGGAGCTGTCGCACATGATTACTGGTTCGA
AACGATCGATAAAAAGCCATGCCGCTACTTCGAACAAATTCCAAAACAAA
ATCCCTTCATCTTTCATAACCTGACGTTTTTCCCGGACACATATTCTGAA
GACTTGTTAGACGATTCCATATTTGAAGTTCCGAAATATTGTCATAGAGA
TTGCCCGCATCCTTATCCACCACCTCATCGAAGATCTAATGCAGATGCGA
GAGAAAGAGGAACTAtttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064651-exon-scaffold_420-1491911889:311582..311950 | TCONS_00064651-exon-scaffold_420-1491911889:311582..311950 | Clytia hemisphaerica | exon |
| TCONS_00064651-exon-scaffold_420-1510915933:311582..311950 | TCONS_00064651-exon-scaffold_420-1510915933:311582..311950 | Clytia hemisphaerica | exon |
| TCONS_00064651-exon-scaffold_420-1575043694:311582..311950 | TCONS_00064651-exon-scaffold_420-1575043694:311582..311950 | Clytia hemisphaerica | exon |
| TCONS_00064651-exon-scaffold_420-1491911889:312333..312514 | TCONS_00064651-exon-scaffold_420-1491911889:312333..312514 | Clytia hemisphaerica | exon |
| TCONS_00064651-exon-scaffold_420-1510915933:312333..312514 | TCONS_00064651-exon-scaffold_420-1510915933:312333..312514 | Clytia hemisphaerica | exon |
| TCONS_00064651-exon-scaffold_420-1575043694:312333..312514 | TCONS_00064651-exon-scaffold_420-1575043694:312333..312514 | Clytia hemisphaerica | exon |
| TCONS_00064651-exon-scaffold_420-1491911889:313023..313525 | TCONS_00064651-exon-scaffold_420-1491911889:313023..313525 | Clytia hemisphaerica | exon |
| TCONS_00064651-exon-scaffold_420-1510915933:313023..313525 | TCONS_00064651-exon-scaffold_420-1510915933:313023..313525 | Clytia hemisphaerica | exon |
| TCONS_00064651-exon-scaffold_420-1575043694:313023..313525 | TCONS_00064651-exon-scaffold_420-1575043694:313023..313525 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_420 | supercontig | scaffold_420:311582..313525 + |
Blast
The following BLAST results are available for this feature:
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