TCONS_00064800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064800
Unique NameTCONS_00064800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length490

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064800 ID=TCONS_00064800|Name=TCONS_00064800|organism=Clytia hemisphaerica|type=transcript|length=490bp
GGCTTTTAGATTCATTTTTTAGATAATCAAAGGTTAATCAATAGTAAAGA
TAATTGTAACCGAATGACACTCTAACAGTTTAGAAATGTTTAAAAACGTA
TTTTCTTACCGAACCATGTAAGCATATCTCTATCCTTCTTCGCTTTTCAT
TTTTACGTCCGAAATGACAACACGTCTGTCCATCtgattgaacaaaaaaa
ttgtacTAATGAAGAGGCTTAGGAATGGTTTTTAATCCACAACGTCAAAA
AACGTCTTAAAAGACACAAACACATCATTGCGTGTTCTACCCGACATGCA
CTTCAAGGTCACGAGCTCCAGTATTCCTTGAGGCCGAGCTGATTATCTTT
TTAtctgatttatatatttttttacctAGTTTCAATGCTGACATTTAGAT
TTGTAGGGGGTTATATTTATTTTGTTAggtaaaatttaatttattttgaa
attatttataGACATAGAAAATATAATTTACGATCGGATA
Run BLAST on NCBI

transcript from alignment at scaffold_423:271867..272356

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064800 ID=TCONS_00064800|Name=TCONS_00064800|organism=Clytia hemisphaerica|type=transcript|length=490bp|location=Sequence derived from alignment at scaffold_423:271867..272356 (Clytia hemisphaerica)
TATCCGATCGTAAATTATATTTTCTATGTCtataaataatttcaaaataa
attaaattttaccTAACAAAATAAATATAACCCCCTACAAATCTAAATGT
CAGCATTGAAACTaggtaaaaaaatatataaatcagaTAAAAAGATAATC
AGCTCGGCCTCAAGGAATACTGGAGCTCGTGACCTTGAAGTGCATGTCGG
GTAGAACACGCAATGATGTGTTTGTGTCTTTTAAGACGTTTTTTGACGTT
GTGGATTAAAAACCATTCCTAAGCCTCTTCATTAgtacaatttttttgtt
caatcaGATGGACAGACGTGTTGTCATTTCGGACGTAAAAATGAAAAGCG
AAGAAGGATAGAGATATGCTTACATGGTTCGGTAAGAAAATACGTTTTTA
AACATTTCTAAACTGTTAGAGTGTCATTCGGTTACAATTATCTTTACTAT
TGATTAACCTTTGATTATCTAAAAAATGAATCTAAAAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040642XLOC_040642Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064800-exon-scaffold_423-1491911889:271867..272356TCONS_00064800-exon-scaffold_423-1491911889:271867..272356Clytia hemisphaericaexon
TCONS_00064800-exon-scaffold_423-1510915933:271867..272356TCONS_00064800-exon-scaffold_423-1510915933:271867..272356Clytia hemisphaericaexon
TCONS_00064800-exon-scaffold_423-1575043694:271867..272356TCONS_00064800-exon-scaffold_423-1575043694:271867..272356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:271867..272356 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.142953	0	0.170262	0.941805	0.324642	0.607852	9.68176	2.37213	11.2564	21.8622	2.18318	1.91845	4.37321	5.30861	0.568676	0.971458	0.402637	0.140443	0.244142	0.357251	0.579047	0.658048	0.135555	0	0.692484	0	0.140134	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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