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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064820 ID=TCONS_00064820|Name=TCONS_00064820|organism=Clytia hemisphaerica|type=transcript|length=1440bp
ATTTCCTAGGGAATACGGATTGCAATGATAAGATCATGTATCATTTTACT
GTCCTTGCATtaatggatttgaaaataattttaccgAGAGCAGCCGTGAT
GTATTAAATTAATAATTACTCTTACtattttcagtgaaaattatTTGTGT
GATGGAGAAGAATCGACGGGGAGGATCAGCTTACACCACTATGATGAATA
TCGAAGTTCGTTTCTTCGCTCTCCTCATGCTCACTGTCATCACCATCTAC
ATCGTGTTCGACACGCAACGTGAAAGCAACCTTTCCACGGAATTGCACAA
GATCAACCGTTTGTTGCGCAGAAGCGGAAGACACTCCTCATCACCATCTT
CTTCTTCCACACAAAACAAAGAgagtgaagaaaaagaaaaactgagtGAA
GATGAAAACGAACTAGCGTGGCTTGACAGAAATGATTCCAAACCATATCG
TGATTATGGAGACGAGACGTGTGGTATTAACACGGATCGGATGGGTTTTT
TATTTCTCATCAGAAAATGGCAAGAAATTGCAAAAGCTAATAACATTCGT
TACTTTCTGGATTTTGGTTCATTACTTGGTGCGTGGCGTGATGAAGAAAC
GATTCCTTACGATGCTGACACCGATATCCGTGTTCATAATGACGACTTGG
AAACATTGTTCAATCTTTCTATTCGGGTCCGTAAAATGTCTTGGGATTCT
TACGACGATAATGGTGTACATTTATACTTCACGAAGGATTGGAGAAAACC
GTATCATATGCGACGTCGGTTTAGTTGCAAAGGGAAGGAGGTTCCAGACT
ATGAAGGTCAATGTTCATTCACCGATCCTACAGCTCGTCTCATACATCGC
CAGTGGCATCTCGATTTGTTCGTCTACACTGATTATCACGACACAATTTT
GTTTATTCCTGATGGCCGACCAGctttcttgaaaaatgattttctaCCTC
TTGTGCGCTGTGATTTCATGGGTATAGAGGTACGATGTCCAAAGAAGCCT
CGATTAGTACTGCAAGAACATTATAGCAATTTAATGCCGTCAAAAGTTTG
TTTTAATAAAACTTGGTATGAATCCAGTGAGCCTATTATGAAGCTCATCC
ATAGtaagaaaaacacaaaataactgaatgaaagaaaaatcttttaaacc
tCATTACCTTAGTTTTTCTTGAACGATcctttaatttcattaaaataggt
CTTAAAAGTATGTTGACAATTTaactttttaacaatttctaAGGAAGCAT
GAAAACCTCCGAGCTGAGTAATATCGGGTGTCccaaaaaaacttcgaaat
tTTAAGCGTTTCTCAAGAATTCATATTTATATCTTTGTACGACGGGATAA
CTTTGTTGCGCGATCGGTTCTTCTCTGGCGACAACCATCTGTAAGTTGAG
GTGTTCTCATACGTTTATAACaatgaagttttcttttttt Run BLAST on NCBI protein sequence of TCONS_00064820-protein >TCONS_00064820-protein ID=TCONS_00064820-protein|Name=TCONS_00064820-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MEKNRRGGSAYTTMMNIEVRFFALLMLTVITIYIVFDTQRESNLSTELHK
INRLLRRSGRHSSSPSSSSTQNKESEEKEKLSEDENELAWLDRNDSKPYR
DYGDETCGINTDRMGFLFLIRKWQEIAKANNIRYFLDFGSLLGAWRDEET
IPYDADTDIRVHNDDLETLFNLSIRVRKMSWDSYDDNGVHLYFTKDWRKP
YHMRRRFSCKGKEVPDYEGQCSFTDPTARLIHRQWHLDLFVYTDYHDTIL
FIPDGRPAFLKNDFLPLVRCDFMGIEVRCPKKPRLVLQEHYSNLMPSKVC
FNKTWYESSEPIMKLIHSKKNTK Run BLAST on NCBI transcript from alignment at scaffold_424:74493..75932 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064820 ID=TCONS_00064820|Name=TCONS_00064820|organism=Clytia hemisphaerica|type=transcript|length=1440bp|location=Sequence derived from alignment at scaffold_424:74493..75932 (Clytia hemisphaerica)
aaaaaaagaaaacttcattGTTATAAACGTATGAGAACACCTCAACTTAC
AGATGGTTGTCGCCAGAGAAGAACCGATCGCGCAACAAAGTTATCCCGTC
GTACAAAGATATAAATATGAATTCTTGAGAAACGCTTAAaatttcgaagt
ttttttggGACACCCGATATTACTCAGCTCGGAGGTTTTCATGCTTCCTt
agaaattgttaaaaagttAAATTGTCAACATACTTTTAAGacctatttta
atgaaattaaaggATCGTTCAAGAAAAACTAAGGTAATGaggtttaaaag
atttttctttcattcagttattttgtgtttttcttaCTATGGATGAGCTT
CATAATAGGCTCACTGGATTCATACCAAGTTTTATTAAAACAAACTTTTG
ACGGCATTAAATTGCTATAATGTTCTTGCAGTACTAATCGAGGCTTCTTT
GGACATCGTACCTCTATACCCATGAAATCACAGCGCACAAGAGGtagaaa
atcatttttcaagaaagCTGGTCGGCCATCAGGAATAAACAAAATTGTGT
CGTGATAATCAGTGTAGACGAACAAATCGAGATGCCACTGGCGATGTATG
AGACGAGCTGTAGGATCGGTGAATGAACATTGACCTTCATAGTCTGGAAC
CTCCTTCCCTTTGCAACTAAACCGACGTCGCATATGATACGGTTTTCTCC
AATCCTTCGTGAAGTATAAATGTACACCATTATCGTCGTAAGAATCCCAA
GACATTTTACGGACCCGAATAGAAAGATTGAACAATGTTTCCAAGTCGTC
ATTATGAACACGGATATCGGTGTCAGCATCGTAAGGAATCGTTTCTTCAT
CACGCCACGCACCAAGTAATGAACCAAAATCCAGAAAGTAACGAATGTTA
TTAGCTTTTGCAATTTCTTGCCATTTTCTGATGAGAAATAAAAAACCCAT
CCGATCCGTGTTAATACCACACGTCTCGTCTCCATAATCACGATATGGTT
TGGAATCATTTCTGTCAAGCCACGCTAGTTCGTTTTCATCTTCactcagt
ttttctttttcttcactcTCTTTGTTTTGTGTGGAAGAAGAAGATGGTGA
TGAGGAGTGTCTTCCGCTTCTGCGCAACAAACGGTTGATCTTGTGCAATT
CCGTGGAAAGGTTGCTTTCACGTTGCGTGTCGAACACGATGTAGATGGTG
ATGACAGTGAGCATGAGGAGAGCGAAGAAACGAACTTCGATATTCATCAT
AGTGGTGTAAGCTGATCCTCCCCGTCGATTCTTCTCCATCACACAAataa
ttttcactgaaaataGTAAGAGTAATTATTAATTTAATACATCACGGCTG
CTCTcggtaaaattattttcaaatccattaATGCAAGGACAGTAAAATGA
TACATGATCTTATCATTGCAATCCGTATTCCCTAGGAAAT Coding sequence (CDS) from alignment at scaffold_424:74493..75932 >TCONS_00064820 ID=TCONS_00064820|Name=TCONS_00064820|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_424:74493..75932 (Clytia hemisphaerica)
ttattttgtgtttttcttaCTATGGATGAGCTTCATAATAGGCTCACTGG
ATTCATACCAAGTTTTATTAAAACAAACTTTTGACGGCATTAAATTGCTA
TAATGTTCTTGCAGTACTAATCGAGGCTTCTTTGGACATCGTACCTCTAT
ACCCATGAAATCACAGCGCACAAGAGGtagaaaatcatttttcaagaaag
CTGGTCGGCCATCAGGAATAAACAAAATTGTGTCGTGATAATCAGTGTAG
ACGAACAAATCGAGATGCCACTGGCGATGTATGAGACGAGCTGTAGGATC
GGTGAATGAACATTGACCTTCATAGTCTGGAACCTCCTTCCCTTTGCAAC
TAAACCGACGTCGCATATGATACGGTTTTCTCCAATCCTTCGTGAAGTAT
AAATGTACACCATTATCGTCGTAAGAATCCCAAGACATTTTACGGACCCG
AATAGAAAGATTGAACAATGTTTCCAAGTCGTCATTATGAACACGGATAT
CGGTGTCAGCATCGTAAGGAATCGTTTCTTCATCACGCCACGCACCAAGT
AATGAACCAAAATCCAGAAAGTAACGAATGTTATTAGCTTTTGCAATTTC
TTGCCATTTTCTGATGAGAAATAAAAAACCCATCCGATCCGTGTTAATAC
CACACGTCTCGTCTCCATAATCACGATATGGTTTGGAATCATTTCTGTCA
AGCCACGCTAGTTCGTTTTCATCTTCactcagtttttctttttcttcact
cTCTTTGTTTTGTGTGGAAGAAGAAGATGGTGATGAGGAGTGTCTTCCGC
TTCTGCGCAACAAACGGTTGATCTTGTGCAATTCCGTGGAAAGGTTGCTT
TCACGTTGCGTGTCGAACACGATGTAGATGGTGATGACAGTGAGCATGAG
GAGAGCGAAGAAACGAACTTCGATATTCATCATAGTGGTGTAAGCTGATC
CTCCCCGTCGATTCTTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064820-exon-scaffold_424-1491911889:74493..75932 | TCONS_00064820-exon-scaffold_424-1491911889:74493..75932 | Clytia hemisphaerica | exon |
| TCONS_00064820-exon-scaffold_424-1510915933:74493..75932 | TCONS_00064820-exon-scaffold_424-1510915933:74493..75932 | Clytia hemisphaerica | exon |
| TCONS_00064820-exon-scaffold_424-1575043694:74493..75932 | TCONS_00064820-exon-scaffold_424-1575043694:74493..75932 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_424 | supercontig | scaffold_424:74493..75932 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007074 | LicD_fam |
Blast
The following BLAST results are available for this feature:
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