TCONS_00064834 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00064834
Unique Name	TCONS_00064834
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2296

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_425:70581..76376+

transcript sequence

>TCONS_00064834 ID=TCONS_00064834|Name=TCONS_00064834|organism=Clytia hemisphaerica|type=transcript|length=2296bp
CAGATGGAGACCGATTTCTTGGTTGAGGTTCAAAACGAACAAGTCAACGT
TGAACTCCAACAAGCCAACATCCGAACCGAATTACAAAGTAGTATCTCCG
GTGGTATCTCTGATGGCAAATGGCACACTCTCACATTGACCATTGAAGAT
GGAGATAAGATTTCGTTATACCTTGGAACAGATGACGGTCTTGTAAAGAG
CTCCAAACCTTTACCTAAAGCTGAAGTTACACTTGAAGGAGATATGTTTT
TCGGAGGTTTAGAGGATCAGAATAATGGATTCAATGGAAATATCCGACAA
GTCTACATGTGTGGAAGTGAAATGAACCTTGCACAAGACTTGGAGAATCT
GAAAGGTGGAACACAAGTTGGAGGAAACATTTTGAACGCCCCTCTTGCTC
TCCCACCACGCCCAACCCTGCCGCCACCAACCACCATTCCGCCAACTACA
ACCACAACCACAACCACAACCACAACTACGACGACCACTGCTGCTCCTAC
GACAACAACAACAACTCAACCTCCTATCTTAACCACCACAACTACCACTA
CTGTTCCACCTACCACCACTCCTGAACCAGACACCACTACTCCTGAAACA
GTCACTACCACTCAGGAGCCAGCCACTAGCACCCCAGAGGCTACCACCAC
ACCTGTGGAAACCACAACAGAATTCATCGTTGGACCAATTGAAGACACAA
CCACAACAACAGCGTCGACCACCACCACAACTACAACAACTACCACCACT
CCCGAGGTAACCACCACTCCTGAACCAGCTACCACCACTCCTGAACCAGC
TACCACCACTCCTGAACCAGCTACCACTACCCCTGAACCAGCTACCACTA
CTCCGGAACCAGCAACCACAACTCCTGAACCAGCCACTACCACTCCAGAA
CCTGAAACCACTACTCCGGAGCCTACCACGACTACCACCACGACAACAAC
TACTACTACTACAACCACCACCACCACCACCACCACCACCCCAGCTCCTA
CCACGACTGCAGCTCCTCAATGCTCCAGCAAATTGGTGCCTGTTGCCAAT
GCTTATGGTTTTGGTTTCGAAGATGAAAGCTACATCGAGTTTGGAGTGAT
GAAAGGAAAACTAGATACCAAGGCGGATTAcgaattctcattttacacaa
TGGAAGAAGAAGGTTTATTGATGTCAGGTTTTATGAAGAGTCCTTACGAT
TACGAAGCTATCTATTTAGCTGGTGGAAAAGCCCACTACATTTTCAATGC
TGGTGCAGGCTCCTTGACTTTGTCATCCAAGAGTACCGTCAATGATGGAA
AATGGCATACTATCAAAGCGACACGTTCTAAGAGAGCTGGAACGTTGTAC
GTTGATGGAGATATTGCAGCTGTCGGTGAATCAAAACCAGGAGCATCTGC
TGTCAACAACATTAACAAAGTCTACTTTGGTGGATTGCCCTCCACTTCGC
TTGTCATCCCTAAAACTCCGAAAACATCTCAAATTCCACTGAAAGGAGGA
ATGAAGGACTTTAAACTTTTCAACGAAGCTCTGGTCACGCCTGCTGCTAG
TGTTGGAACGTCACCAGCGTACAACGGATTGCCATATGTTAACGCTGTCT
CCTTTGGTGCCAATGGTGGATTTGCCCAGAAATTCAAGCAATTGAAAATC
GGACAAAATTTCAAGATCTCATTCGACGTCCGTGCGGCTAACAAAGCCGG
CTCCCTCTTTTACGTGTACGGAGGAGGTGATCATTTGTCCGTCACCGTCG
AAGAAAACGGTTCGATCAAGGTGACGTGTAACAACGGTGGAGGGTTGTTC
TCCGTGGCGTACAAACCGGAACCTTCCGTTTGCAACGGTGATATTTACAG
TGTGCTTGtggagaagaaaatgaaaacattaaaattgACAGTCAATGGTG
CCGTGACCGAAGAAACGACCACCAAATCAAGCACGTCTGCTGACACCAAC
TCGCCCGCTTACTTTGGTGGACTTCCAGACAATTTGAGATCAAACTGGTC
CAAGATTTCTGACAGCAAAGACTACAAGCCCTTCGAAGGTTGTATCAGCA
AAGTGGAAATTAATGACGAAGCTATCGACTTCacaagtgacgtcatcaaa
aatggcGCCGTCATGACGGGATGTCCTGAATGAACAAGAATGATGGAAAA
ATTTTGActtgttacaattttttttacaattttttagattatttttcata
tttacttAGActaccttttttgaaaatatagcaCAGTGGAAGCACAATTA
TACCTGGCTTCGCTAAAACAATTTATCTTTTCAGTGTACTTCAAAC

Run BLAST on NCBI

transcript from alignment at scaffold_425:70581..76376+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00064834 ID=TCONS_00064834|Name=TCONS_00064834|organism=Clytia hemisphaerica|type=transcript|length=5796bp|location=Sequence derived from alignment at scaffold_425:70581..76376+ (Clytia hemisphaerica)
CAGATGGAGACCGATTTCTTGGTTGAGGTTCAAAACGAACAAGTCAACGT
TGAACTCCAACAAGCCAACATCCGAACCGAATTACAAAGTAGTATCTCCG
GTGGTATCTCTGATGGCAAATGGCACACTCTCACATTGACCATTGAAGAT
GGAGATAAGTAAGTCTGCATTGAATTACCTCTTATTTGAGTCTGGCTAAC
AGAGAcgcgaaagaaaattctttgtacttctttttctctttcttctaTCT
GGTAATAACCTTGATGAACAATAAAATGCCTATGAGATTGACCCGGCTGA
ATATTGTTCAACATAAGGAGAAGTTTCTCAGAACACCTTCAATGGAGCAC
TCTATTGATCTTTTCTTCTCAGGATTTCGTTATACCTTGGAACAGATGAC
GGTCTTGTAAAGAGCTCCAAACCTTTACCTAAAGCTGAAGTTACACTTGA
AGGAGATATGTTTTTCGGAGGTTTAGAGGATCAGAATAATGGATTCAATG
GAAATATCCGACAAGTCNGGAAGGAGATATGTTTTTCGGAGGTTTGCAGG
ATCAGAATAATGGATTCAATGGAAACATCCGACAAGTCTACATGTGTGGA
AGGTAGGCTGCTTTACATAGcatgttttgttttcatttaaaaggCAAATT
GATTTGTTAGGAATGATCTCCTTGGTTTAAATTTTAGGTTCTTTGTTTCT
ATATATCTAGTTGGTTGAACTAGAATTATTTAGCTGCATTCATTTCCAAG
TCTGCTCAACGTCTTCAaaagattttactttttgtttcCACAGTGAAATG
AACCTTGCACAAGACTTGGAGAATCTGAAAGGTGGAACACAAGTTGGAGG
AAACATTTTGAACGCCCCTCTTGCTCTCCCACCACGCCCAACCCTGCCGC
CACCAACCACCATTCCGCCAACTACAACCACAACCACAACCACAACCACA
ACTACGACGACCACTGCTGCTCCTACGACAACAACAACAACTCAACCTCC
TATCTTAACCACCACAACTACCACTACTGTTCCACCTACCACCACTCCTG
AACCAGACACCACTACTCCTGAAACAGTCACTACCACTCAGGAGCCAGCC
ACTAGCACCCCAGAGGCTACCACCACACCTGTGGAAACCACAACAGAATT
CATCGTTGGACCAATTGAAGACACAACCACAACAACAGCGTCGACCACCA
CCACAACTACAACAACTACCACCACTCCCGAGGTAACCACCACTCCTGAA
CCAGCTACCACCACTCCTGAACCAGCTACCACCACTCCTGAACCAGCTAC
CACTACCCCTGAACCAGCTACCACTACTCCGGAACCAGCAACCACAACTC
CTGAACCAGCCACTACCACTCCAGAACCTGAAACCACTACTCCGGAGCCT
ACCACGACTACCACCACGACAACAACTACTACTACTACAACCACCACCAC
CACCACCACCACCACCCCAGCTCCTACCACGACTGCAGCTCCTCAATGCT
CCAGCAAATTGGTGCCTGTTGCCAATGCTTATGGTTTTGGTTTCGAAGAT
GAAAGCTACATCGAGTTTGGAGTGATGAAAGGAAAACTAGATACCAAGTA
AGCTTCATCTTCAAAATGTCTGTTTGTCTAGATGAGTGAGAAAATGAAAC
ACAAAAAATGTTACTTTTAGTAATTTAAATTAAGGTTTAGTTCAAAACAA
TCAAGTGGCGATAGTGGGTTTTACCTTATAGGAATCAATGACAACGCAAA
CTCGTTAAAAGAACTCTATGTAAACGTCTCTAGGTTTTCCAGTACGACCC
CGTAGTTTTTGCTCATAATAGCAAGGAAAGACTACACTTTTATGAACAGA
CTTTAGGTATTTCTAGATTATTCAACACGGCTCTTTTCTTTCATTCNATA
GCAAGGAAAGACTACACTTTTATGAACAGATTTTAGGTATTTCTAGATTA
TTCAACACGGCTCCTTTCTTTCATTCAACAGGGCGGATTAcgaattctca
ttttacacaaTGGAAGAAGAAGGTTTATTGATGTCAGGTTTTATGAAGAG
TCCTTACGATTACGAAGCTATCTATTTAGCTGGTGGAAAAGCCCACTACA
TTTTCAATGCTGGTGCAGGCTCCTTGACTTTGTCATCCAAGAGTACCGTC
AATGATGGAAAATGGCATACTATCAAAGCGACACGTTCTAAGAGAGCTGG
TTAGTTTTATACTTTCGATATTttcgagtttatgtatttgcactttttag
GACGGCGGAGTGAAAGAAGCGATTTGATATAACACGCAGTTTTGATATGC
AAAAATTGAAGAGGGTAAAAGTGCTTTTTTACCGTTGTCTTCATTTGATC
CAGAGGACTGTAAAGAGatgaaaaaaaagcttttctgattactcaaagtt
caacgatcacttcttttgaaaattctattgtaaaaacgttgattaggtca
ttaaacgaaagtccagaaaaggaggctcgccatacaaatcggacggtttc
tataTGGTTAGACgataaatatgaaaatttgtttttcctttttcgccgat
tactagttcaatctTAAAGAACAAGGAACaatttttttaccaatgtatag
caaaagaaattcttaacgcaatgatattaaattgattcttgtaaaactgt
cagaaatcagtaaaatcaagatgaagttatattTTTGCTCGAGCTCTAGA
TTTCCATACAATTGTGtgtgatgcggttatatcagtggaatcgctaggaa
attcttagcaagaagatataggtaccttttctaataggagaggtgtaccc
aaaatataagtcCTAAAAGtctgcgcataatcaggcttgaaacaaaagaa
ttttgtcacaacacgctaattatgcagatttttcatagcgacaacaaaag
aaacctattaactcgacataaactcccttaatggcaagagacctggtata
cggcgagccgtttttccattgttttcaagacactgtttttccatctcttt
acatttcTCTGTTTGATCAGGATCTAGACTAAATAGAAGCTAACCGTCTT
CGTTCCAGAACAacacaaatacataaactcgataTTACCACTGATATTAT
ACCACTTACCAATGTTTTGGAAATACTTGATATCGAATAATAATCTGGCT
GAAAAGAGTATAAAAATTACAGCATTTACATTTTCCATCATTTCAGGAAC
GTTGTACGTTGATGGAGATATTGCAGCTGTCGGTGAATCAAAACCAGGAG
CATCTGCTGTCAACAACATTAACAAAGTCTACTTTGGTGGATTGCCCTCC
ACTTCGCTTGTCATCCCTAAAACTCCGGTAAGTTCCGAATCGTCAACTTT
TAGTTTTAAACATTCATACCAGCAAAATCATTCCAAGATTTCCATTATCC
AACGACCTCCATTACATCATATTAGAAGCGTTAAATTGTCTTGTAGGGGT
TTCAATCAGTTTGCAATGAATCATAGGAATGAGCTCTAACAATAGCTCCC
GGTTCACCAGACATTATAAAAGTCTATTGGACGTGCGGTGTTCCTGGCTT
CCCACAATGCATTGGAGCAGTGAAGCAGCTTATGTCTANTGGTATACggc
gagccgtttttccattgttttcaagacactgtttttccatctctttacat
ttcTCTGTTTGATTAGGATCTAGACTAAATAGAAGCTAACCGTCTTCGTT
CCAGAACAacacaaatacataaactcgataTTACCACTGATAATATACCA
CTTACCAATGTTTTGGGAATACTTGATATCGAATAATAATCTGGCTGAAA
AGAGTATAAAAATTACAGCATTTACATTTTCCATCATTTCAGGAACGTTG
TACGTTGATGGAGATATTGCAGCTGTCGGTGAATCAAAACCAGGAGCGTC
TGCTGTCAACAACATTAACAAAGTCTACTTTGGTGGATTGCCCTCCACTT
CGCTTGTCATCCCTAAAACTCCGGTAAGTTCCGAATCGTCAACTTTTAGT
TTTAAACATTCATACCAGCAAAATCATTCCAAGATTTCCATTATCCAACG
ACCTCCATTACATCATATTAGAAGCGTTAAATTGTCTTGTAGGGGTTTCA
ATCAGTTTGCAATGAATCATAGGAATGAGCTCTAACAATAGCTCCCGGTT
CACTAGACATTATAAAAGTCTATTGGACGTGCGGTGTTCCTGGCTTCCCA
CAATGCATTGGAGCAGTGAAGTAGCTTATGTCTACCACATTATCGAAATT
CGAAAAATCCCTTAACAAGATATATTGGTTGTCAATGTCAATTAACTTTT
GTGTCGTGCAAAAATTAACGAATCTCTTTTTTCTTGTCCACAGAAAACAT
CTCAAATTCCACTGAAAGGAGGAATGAAGGACTTTAAACTTTTCAACGAA
GCTCTGGTCACGCCTGCTGCTAGTGTTGGAACGTCACCAGCGTACAACGG
ATTGCCATATGTTAACGCTGTCTCCTTTGGTGCCAATGGTGGATTTGCCC
AGAAATTCAGTAAGTTTGAATTTATTTACAATATACTCTTGAAAGTACTC
AATATGTTTAGAAACTCAACAATAGGGGATATACTCTTTTTGTCCGCTTA
AGACGTTTTCTGTTTTAGACAACAAATCTTTAGAAAACCTCCTCGAAAAT
CATTCTTCTATCGCCTTTTAGTTCGATTAATTCATTGTTTTATCCCTCAT
AATATCATTTACTCTCCattcttgaatttttgaaataatttgcaTCTTTC
TTATCAGAGCAATTGAAAATCGGACAAAATTTCAAGATCTCATTCGACGT
CCGTGCGGCTAACAAAGCCGGCTCCCTCTTTTACGTGTACGGAGGAGGTG
ATCATTTGTCCGTCACCGTCGAAGAAAACGGTTCGATCAAGGTGACGTGT
AACAACGGTGGAGGGTTGTTCTCCGTGGCGTACAAACCGGAACCTTCCGT
TTGCAACGGTGATATTTACAGTGTGCTTGtggagaagaaaatgaaaacat
taaaattgACAGTCAATGGTGCCGTGACCGAAGAAACGACCACCAAATCA
AGCACGTCTGCTGACACCAACTCGCCCGCTTACTTTGGTGGACTTCCAGA
CAATTTGAGATCAAACTGGTCCAAGATTTCTGACAGTAAGTTTTTCAGAC
CCTTCATAAAATTTGTCTTCTCCGTTCGTAACGTCCCTTCTACTAGATGA
TGCTATCGTCTGTTACAaggatagtaaaggcgggaagaTGTGAATGCGCA
GACTTTACAGCCATTTctgcggtatacggaaaaagtCGGCGCTAGAGCTT
CGAAGAAAGACAGTCAAACTCTAGCGGCTGTAAACTATTtatggcaaaaa
aaaacatatatttgTGAATTTTCTTCGACTTTgagcttatttcttagata
gtgatttgtcttagactatagcatagccTACCCTCCTACTATCTTCCTAT
CTGCCTTGTTTTAAAACAGAAACTTGATTCATTTTCTCAACCTATATCCT
TGCTTCATTCTTAGGCAAAGACTACAAGCCCTTCGAAGGTTGTATCAGCA
AAGTGGAAATTAATGACGAAGCTATCGACTTCacaagtgacgtcatcaaa
aatggcGCCGTCATGACGGGATGTCCTGAATGAACAAGAATGATGGAAAA
ATTTTGActtgttacaattttttttacaattttttagattatttttcata
tttacttAGActaccttttttgaaaatatagcaCAGTGGAAGCACAATTA
TACCTGGCTTCGCTAAAACAATTTATCTTTTCAGTGTACTTCAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040667	XLOC_040667	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_425	supercontig	scaffold_425:70581..76376 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.523233	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Blast

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BLAST of TCONS_00064834 vs. Swiss-Prot (Human)
Match: LAMA4 (Laminin subunit alpha-4 OS=Homo sapiens GN=LAMA4 PE=1 SV=4)

HSP 1 Score: 141.739 bits (356), Expect = 2.644e-34
Identity = 101/370 (27.30%), Postives = 175/370 (47.30%), Query Frame = 1

Query: 1042 VANAYGFGFEDESYIEFGVMKGKLDTKADYEFSFYTMEEEGLLMSGFMKSPYDYEAIYLAGGKAHYIFNAGAGSLTLSSKSTVNDGKWHTIKATRSKRAGTLYVDGDIAAVGESKPGASAVNNIN-KVYFGGLPSTSLVIP-KTPKTSQI----PLKGGMKDFKLFNEALVTPAASVGTSPAYNGLPYVNAVSFGANGGFAQKFKQLKIGQNFKISFDVRAANKAGSLFYVYG-GGDHLSVTVEENGSIKVTCNNGGGLFSVAYKPEPSVCNGDIYSVLVEKKMKTLKLTVNGAVXXXXXXXXXXXXXXXXPAYFGGLPDNLRSNWSKISDSKDYKPFEGCISKVEINDEAIDFTSDVIKNGAV-MTGCP 2127
            + +AY +G    S  EF  +KG    K+ +     T    G++     +   D+  ++LA G+  Y+FN G   L + S+   NDG WH +   R + +G L +DG +  + ES P   A   I   +Y GG      V P K  K  QI       G + + +L   ++ + + +   +P + G P      F   GG+    +   IG  F+I+F+VR  + +G+L + +   G++L+V + +NG + V  NNG   FS +  P+ S+C+G  + + V +    ++L V+  V       +    D   P + GG+P++L +   +++ S   KPF GCI    I+   + F+   + +GAV +  CP
Sbjct: 1466 IEHAYQYGGTANSRQEFEHLKGDFGAKSQFSIRLRTRSSHGMIFYVSDQEENDFMTLFLAHGRLVYMFNVGHKKLKIRSQEKYNDGLWHDVIFIRERSSGRLVIDG-LRVLEESLPPTEATWKIKGPIYLGG------VAPGKAVKNVQINSIYSFSGCLSNLQLNGASITSASQTFSVTPCFEG-PMETGTYFSTEGGYVVLDESFNIGLKFEIAFEVRPRSSSGTLVHGHSVNGEYLNVHM-KNGQVIVKVNNGIRDFSTSVTPKQSLCDGRWHRITVIRDSNVVQLDVDSEVNHVVGPLNPKPIDHREPVFVGGVPESLLT--PRLAPS---KPFTGCIRHFVIDGHPVSFSKAALVSGAVSINSCP 1821

The following BLAST results are available for this feature:

BLAST of TCONS_00064834 vs. Swiss-Prot (Human)

BLAST of TCONS_00064834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LAMA4	2.644e-34	27.30	Laminin subunit alpha-4 OS=Homo sapiens GN=LAMA4 P...	[more]

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TCONS_00064834 (transcript) - C. hemisphaerica