TCONS_00064893 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064893
Unique NameTCONS_00064893
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064893 ID=TCONS_00064893|Name=TCONS_00064893|organism=Clytia hemisphaerica|type=transcript|length=691bp
gttcttattttgttcttattttttccaaggtaaaaaacaagttttggcta
tttactttattatttagaggattttagaaaccagggCAAACAgggattct
ttttgctataactctctaacttcagcctctccactgttcttaaattgttc
ttattttttggcatttttgagccttattgttcttataaaactgttcttat
ataaaaaaagtatatttcCTCTCTTCTCAACATTTTTCCTTTCATGCTCG
CATGCTgcatattaagaaaaaattcgactctttatttacacatcaaaaca
aaggctctTCATGTTGCCCATTgtttgatgaataattttgtcTGCAAAAA
GAAGTTAATTTTTCAAGACAATACAACCCACCAGCCAAACAATGAATAAT
AGAAAGGAAAAGCACTGTGACGGACAAAAAATCTCTCATTTATGGTACCA
TAGAACACTGGAGTAAAGGATATCATTTTATACTCTCCTACACATTTGTT
AAAATGTTTGGGGTTTGAGCACTAAGTTGTTTTGGCCTTGATGGGCCGTG
AACTGTAAACAAACCAATAAGTAACCATAGTAACTTCAATCTTTTAAGCC
TGTAGGGGTCTGGAGACAAAGCTGTCTTTGGCACTGATGGGCTACGCGAG
Aaaagtgattttaaaaataaaaaaacaaaatgctttttaaa
Run BLAST on NCBI

transcript from alignment at scaffold_425:107801..108491

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064893 ID=TCONS_00064893|Name=TCONS_00064893|organism=Clytia hemisphaerica|type=transcript|length=691bp|location=Sequence derived from alignment at scaffold_425:107801..108491 (Clytia hemisphaerica)
tttaaaaagcattttgtttttttatttttaaaatcactttTCTCGCGTAG
CCCATCAGTGCCAAAGACAGCTTTGTCTCCAGACCCCTACAGGCTTAAAA
GATTGAAGTTACTATGGTTACTTATTGGTTTGTTTACAGTTCACGGCCCA
TCAAGGCCAAAACAACTTAGTGCTCAAACCCCAAACATTTTAACAAATGT
GTAGGAGAGTATAAAATGATATCCTTTACTCCAGTGTTCTATGGTACCAT
AAATGAGAGATTTTTTGTCCGTCACAGTGCTTTTCCTTTCTATTATTCAT
TGTTTGGCTGGTGGGTTGTATTGTCTTGAAAAATTAACTTCTTTTTGCAg
acaaaattattcatcaaacAATGGGCAACATGAagagcctttgttttgat
gtgtaaataaagagtcgaattttttcttaatatgcAGCATGCGAGCATGA
AAGGAAAAATGTTGAGAAGAGAGgaaatatactttttttatataagaaca
gttttataagaacaataaggctcaaaaatgccaaaaaataagaacaattt
aagaacagtggagaggctgaagttagagagttatagcaaaaagaatcccT
GTTTGccctggtttctaaaatcctctaaataataaagtaaatagccaaaa
cttgttttttaccttggaaaaaataagaacaaaataagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040698XLOC_040698Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064893-exon-scaffold_425-1491911889:107801..108491TCONS_00064893-exon-scaffold_425-1491911889:107801..108491Clytia hemisphaericaexon
TCONS_00064893-exon-scaffold_425-1510915933:107801..108491TCONS_00064893-exon-scaffold_425-1510915933:107801..108491Clytia hemisphaericaexon
TCONS_00064893-exon-scaffold_425-1575043694:107801..108491TCONS_00064893-exon-scaffold_425-1575043694:107801..108491Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_425supercontigscaffold_425:107801..108491 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.867871	1.47357	2.41796	2.33453	1.91806	1.0116	3.42936	3.41196	2.14501	2.17956	2.75738	1.93273	0.940046	1.04192	0.79815	0.892019	0.27594	0.79083	0.371823	0.914408	1.15161	1.23926	0.852138	0.728618	3.61307	5.45474	1.01682	1.71259	0.408132	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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