TCONS_00064845 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064845
Unique NameTCONS_00064845
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064845 ID=TCONS_00064845|Name=TCONS_00064845|organism=Clytia hemisphaerica|type=transcript|length=638bp
TTTAAAACTCTTATAAAGGACCTTTAGGTACAAAATTTCTGGTCAAATTG
AGCATTCGATCTTGAAGATGTCGTGCGAACTTTTGAAGATTGTTCTTTTT
CTTGGACTTGCTACATTTTCCCAATGTGTTTTCAAGCTTGAAAATTGTGA
CAAGACAGCTCCGGTGCAATACACCCTTCTGAAAGCACCTGATTACTTGG
TCCTTCGCAATAATGGAAACATCAAATTGTCAGCATCGATCAAAGTCAAA
TCAAGTCAATCGTTACCAAGACATTTAAGGATGAAGATTTCACTTTCCAA
AAGAATTGGTTTTGTCTGGATTGACATCCCTTGTGTCGGATGTGACATCA
AAGTCGACACATTCACCATCCCAGAGATCCGAACCATTCGAAGAGtatgt
tcacaaaattgtactCTAACAGCTGAAGATATTGTTTTTCCGTTATCTTC
TCATATCGAAGAATACATTCCTGGTATTTTCCCAAATATGCTTCTTGAGG
GTCATTTCTACATCAAGATGGACATGGTCGATGAATCAAATCACAAAAAC
AGAGTTGTGTGCGTCAAAGGGTATACTGATGTCAAAACTTCGTAAATTAA
AGAAATAACGAAagataattcttgaaaaacgaAATAAC
Run BLAST on NCBI

protein sequence of TCONS_00064845-protein

>TCONS_00064845-protein ID=TCONS_00064845-protein|Name=TCONS_00064845-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MSCELLKIVLFLGLATFSQCVFKLENCDKTAPVQYTLLKAPDYLVLRNNG
NIKLSASIKVKSSQSLPRHLRMKISLSKRIGFVWIDIPCVGCDIKVDTFT
IPEIRTIRRVCSQNCTLTAEDIVFPLSSHIEEYIPGIFPNMLLEGHFYIK
MDMVDESNHKNRVVCVKGYTDVKTS
Run BLAST on NCBI

transcript from alignment at scaffold_425:219523..221466+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064845 ID=TCONS_00064845|Name=TCONS_00064845|organism=Clytia hemisphaerica|type=transcript|length=1944bp|location=Sequence derived from alignment at scaffold_425:219523..221466+ (Clytia hemisphaerica)
TTTAAAACTCTTATAAAGGACCTTTAGGTACAAAATTTCTGGTCAAATTG
AGCATTCGATCTTGAAGATGTCGTGCGAACTTTTGAAGATTGTTCTTTTT
CTTGGACTTGCTACATTTTCCCAATGTGTTTTCAAGCTTGAAAATTGTGG
TAAGTGGTCAGGAATAATTTCTTTTCAGAGAGTCtgcagaaaaaaacatt
tttttcgcaTTAAGGTCACACGGTTAAGCTAAGTGATTATATATCAGGCT
GTTTCTCTGAGTAAAAGTAGGTTCCATAAAGTTGTTTCCAAAGGGGCTAG
AGAGGTATCTTCAACTTTTCCCAGGCAAGGGAAAGCGAAAGCTTAAGATT
TTCATCGCATTTAAGATGACGGATTGGATCTAAGACTTTCTCTGTTTTCt
cgttttatatttttcaaatattggcGGTAAATCTTACTTGCGATACCCAC
CATTTGTATGAAAAACATGCAGGACTCACAATTTATTATATGTAGGAACT
aagttggcttcaaatcctacataAAGGAATCAACTCTAGATTCTTACACT
GAGTTTGGTGTTTCTCATAGACAAGACAGCTCCGGTGCAATACACCCTTC
TGAAAGCACCTGATTACTTGGTCCTTCGCAATAATGGAAACATCAAATTG
TCAGCATCGATCAAAGTCAAATCAAGTCAATCGTTACCAAGACATTTAAG
GATGAAGATTTCACTTTCCAAAAGAATTGGTTTTGTCTGGATTGACATCC
CTTGTGTCGGATGGTGAGAATGTGATTTACTACGCATGCGTCGTTTAACG
CCCAATAGTAGCTTGTTAGAcgaagacatttttttttcattgcgtTTTAA
CCAAAATTGGTTCAGTGGGAAGGTACATTCCCTTCTCACAGCACCGAtcg
ggattgatattcccatgtttttttatggcCGGGGacttgaattccattgt
tttctagccagaaattcagtggggatggaaaaatagcacaatattttgca
gcaTTTTTCTTCACAATATAGTACAGTCCAACGAAGAGGAAAAAGAGGGT
CTCTCTTCCTTGgagcaacaaaataaaaatactgATTGCTATCCCTTTTC
TCATCACAGTGACATCAAAGTCGACACATTCACCATCCCAGAGATCCGAA
CCATTCGAAGAGtatgttcacaaaattgtactCTAACAGCTGAAGATATT
GTTTTTCCGTTATCTTCTCATATCGAAGAATACATTCCTGGTATTTTCCC
AAATATGCTTCTTGAGGTTAGTAAAAttgatgttaattttttttgcattt
tggaATAACCACCTCAATAATAGTCCGTAAACTCCGTGTTATCGGGCTAT
TACATATTAGGGAATCAGAAATAAAGTAAGATAACCCTTAACGGCCTGAG
GTCGAAAATAGGTTTCTTGTTACGATAGCTGAAATCTAGGGGGGGGCTAT
GAACTGAAAAAATCATGTTCAAGGTCGTGTTGAGGGAGCGGGCTATGTTT
TACGTGTTAGAAGAAGCCCTAAACAGGccttcgcctagttcgaaaaTCTA
GGATGAAGACCAAAAAATGCCTAGTCTAGCTGTCCTTTCTGACTAGGATT
AGATATATTAGGAATGTCAACATCATTTCGTCATAAACCtctataattct
atgaatataATATGACTTATCAACTAAAACTTGTGGATCGAACACACATT
TAATGAACAAATCAGTCTTCTcgtactttaaaaaaaaacaaaaaaataac
ttgTCTCTTACATGCACGGTAATTTCTATATCAAGCCTTCTCTATCCGAT
TCCAGGGTCATTTCTACATCAAGATGGACATGGTCGATGAATCAAATCAC
AAAAACAGAGTTGTGTGCGTCAAAGGGTATACTGATGTCAAAACTTCGTA
AATTAAAGAAATAACGAAagataattcttgaaaaacgaAATAAC

Coding sequence (CDS) from alignment at scaffold_425:219523..221466+

>TCONS_00064845 ID=TCONS_00064845|Name=TCONS_00064845|organism=Clytia hemisphaerica|type=CDS|length=2112bp|location=Sequence derived from alignment at scaffold_425:219523..221466+ (Clytia hemisphaerica)
ATGTCGTGCGAACTTTTGAAGATTGTTCTTTTTCTTGGACTTGCTACATT
TTCCCAATGTGTTTTCAAGCTTGAAAATTGTGACAAGACAGCTCCGGTGC
AATACACCCTTCTGAAAGCACCTGATTACTTGGTCCTTCGCAATAATGGA
AACATCAAATTGTCAGCATCGATCAAAGTCAAATCAAGTCAATCGTTACC
AAGACATTTAAGGATGAAGATTTCACTTTCCAAAAGAATTGGTTTTGTCT
GGATTGACATCCCTTGTGTCGGATGTGACATCAAAGTCGACACATTCACC
ATCCCAGAGATCCGAACCATTCGAAGAGtatgttcacaaaattgtactCT
AACAGCTGAAGATATTGTTTTTCCGTTATCTTCTCATATCGAAGAATACA
TTCCTGGTATTTTCCCAAATATGCTTCTTGAGGGTCATTTCTACATCAAG
ATGGACATGGTCGATGAATCAAATCACAAAAACAGAGTTGTGTGCGTCAA
AGGGTATACTGATGTCAAAACTTCGTAAATGTCGTGCGAACTTTTGAAGA
TTGTTCTTTTTCTTGGACTTGCTACATTTTCCCAATGTGTTTTCAAGCTT
GAAAATTGTGACAAGACAGCTCCGGTGCAATACACCCTTCTGAAAGCACC
TGATTACTTGGTCCTTCGCAATAATGGAAACATCAAATTGTCAGCATCGA
TCAAAGTCAAATCAAGTCAATCGTTACCAAGACATTTAAGGATGAAGATT
TCACTTTCCAAAAGAATTGGTTTTGTCTGGATTGACATCCCTTGTGTCGG
ATGTGACATCAAAGTCGACACATTCACCATCCCAGAGATCCGAACCATTC
GAAGAGtatgttcacaaaattgtactCTAACAGCTGAAGATATTGTTTTT
CCGTTATCTTCTCATATCGAAGAATACATTCCTGGTATTTTCCCAAATAT
GCTTCTTGAGGGTCATTTCTACATCAAGATGGACATGGTCGATGAATCAA
ATCACAAAAACAGAGTTGTGTGCGTCAAAGGGTATACTGATGTCAAAACT
TCGTAAATGTCGTGCGAACTTTTGAAGATTGTTCTTTTTCTTGGACTTGC
TACATTTTCCCAATGTGTTTTCAAGCTTGAAAATTGTGACAAGACAGCTC
CGGTGCAATACACCCTTCTGAAAGCACCTGATTACTTGGTCCTTCGCAAT
AATGGAAACATCAAATTGTCAGCATCGATCAAAGTCAAATCAAGTCAATC
GTTACCAAGACATTTAAGGATGAAGATTTCACTTTCCAAAAGAATTGGTT
TTGTCTGGATTGACATCCCTTGTGTCGGATGTGACATCAAAGTCGACACA
TTCACCATCCCAGAGATCCGAACCATTCGAAGAGtatgttcacaaaattg
tactCTAACAGCTGAAGATATTGTTTTTCCGTTATCTTCTCATATCGAAG
AATACATTCCTGGTATTTTCCCAAATATGCTTCTTGAGGGTCATTTCTAC
ATCAAGATGGACATGGTCGATGAATCAAATCACAAAAACAGAGTTGTGTG
CGTCAAAGGGTATACTGATGTCAAAACTTCGTAAATGTCGTGCGAACTTT
TGAAGATTGTTCTTTTTCTTGGACTTGCTACATTTTCCCAATGTGTTTTC
AAGCTTGAAAATTGTGACAAGACAGCTCCGGTGCAATACACCCTTCTGAA
AGCACCTGATTACTTGGTCCTTCGCAATAATGGAAACATCAAATTGTCAG
CATCGATCAAAGTCAAATCAAGTCAATCGTTACCAAGACATTTAAGGATG
AAGATTTCACTTTCCAAAAGAATTGGTTTTGTCTGGATTGACATCCCTTG
TGTCGGATGTGACATCAAAGTCGACACATTCACCATCCCAGAGATCCGAA
CCATTCGAAGAGtatgttcacaaaattgtactCTAACAGCTGAAGATATT
GTTTTTCCGTTATCTTCTCATATCGAAGAATACATTCCTGGTATTTTCCC
AAATATGCTTCTTGAGGGTCATTTCTACATCAAGATGGACATGGTCGATG
AATCAAATCACAAAAACAGAGTTGTGTGCGTCAAAGGGTATACTGATGTC
AAAACTTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040672XLOC_040672Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064845-exon-scaffold_425-1491911889:219523..219671TCONS_00064845-exon-scaffold_425-1491911889:219523..219671Clytia hemisphaericaexon
TCONS_00064845-exon-scaffold_425-1510915933:219523..219671TCONS_00064845-exon-scaffold_425-1510915933:219523..219671Clytia hemisphaericaexon
TCONS_00064845-exon-scaffold_425-1575043694:219523..219671TCONS_00064845-exon-scaffold_425-1575043694:219523..219671Clytia hemisphaericaexon
TCONS_00064845-exon-scaffold_425-1491911889:220093..220285TCONS_00064845-exon-scaffold_425-1491911889:220093..220285Clytia hemisphaericaexon
TCONS_00064845-exon-scaffold_425-1510915933:220093..220285TCONS_00064845-exon-scaffold_425-1510915933:220093..220285Clytia hemisphaericaexon
TCONS_00064845-exon-scaffold_425-1575043694:220093..220285TCONS_00064845-exon-scaffold_425-1575043694:220093..220285Clytia hemisphaericaexon
TCONS_00064845-exon-scaffold_425-1491911889:220632..220788TCONS_00064845-exon-scaffold_425-1491911889:220632..220788Clytia hemisphaericaexon
TCONS_00064845-exon-scaffold_425-1510915933:220632..220788TCONS_00064845-exon-scaffold_425-1510915933:220632..220788Clytia hemisphaericaexon
TCONS_00064845-exon-scaffold_425-1575043694:220632..220788TCONS_00064845-exon-scaffold_425-1575043694:220632..220788Clytia hemisphaericaexon
TCONS_00064845-exon-scaffold_425-1491911889:221328..221466TCONS_00064845-exon-scaffold_425-1491911889:221328..221466Clytia hemisphaericaexon
TCONS_00064845-exon-scaffold_425-1510915933:221328..221466TCONS_00064845-exon-scaffold_425-1510915933:221328..221466Clytia hemisphaericaexon
TCONS_00064845-exon-scaffold_425-1575043694:221328..221466TCONS_00064845-exon-scaffold_425-1575043694:221328..221466Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064845-proteinTCONS_00064845-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_425supercontigscaffold_425:219523..221466 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	28.9852	27.7024	0.0469591	0.251971	3.29032	4.32695	196.92	184.076	34.142	31.0055	236.767	296.893	486.125	536.633	0	0	0	0.187037
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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