TCONS_00064847 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064847
Unique NameTCONS_00064847
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length792

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064847 ID=TCONS_00064847|Name=TCONS_00064847|organism=Clytia hemisphaerica|type=transcript|length=792bp
CTAGTTCTCAAGTAGAATATTTTCAATGACTGGAAAAAGTCTTCATAGAA
AATTTGGACCaagaaatgaaataaacaaaattttttaaacttaaatCGCT
TCGGAAATTTAGAAGGATTTCAACgAATGAAGGACGCTAACGATGGTCTT
AGATTGGAAGGCAGCGAAGACCTTGGTTACCATCTTTCTAGTTGGGATTA
TAGCTGCAAGCTTTCCCAATCCAATAGTTCAACAAGCTGAGGTACAAGTT
CATGTACATGAAACTTTGtatttgaatatttctttgCAAAATCTGACAAC
TGGCGACACAATAgtaatatttgaaattttggctggTAAGGAAATCATCA
ATAATATTGATAAGGATACAGGTAATCCAGAAGAACTAAAAAGGGTGTAT
CCTAAGCCAGATAATGTTTTCGGTGATCGCTTGGAAATCATATTTTCACC
AGAAGAGCAACGTGTAACTGTCATCATAAAGGATATGCAATACCAACAGG
ATGGAATGAAAATCGTGTCAGTTTTAGTCAATCGACGAAAACAAGGGGGT
TTCAAGACAGCTCAGAGTGCCACCAACATATCAGTTATTAGTGAACCAAA
TGCAAACTCATCACCATTAGCAATGAACAATACGCAATATCAAATCGATG
CTGGTGAAACTTTGAATCTGACTTTGATCATGAGTGGCAACCCTCAACCT
AACGTGACATTTAAGCTTGAAGATGAGCAGCTCAATGTTTTGGTAACAga
gatttcaaaattaaatcgCACGTATAAGTATGAAGTACTAAG
Run BLAST on NCBI

transcript from alignment at scaffold_425:228604..231238+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064847 ID=TCONS_00064847|Name=TCONS_00064847|organism=Clytia hemisphaerica|type=transcript|length=2635bp|location=Sequence derived from alignment at scaffold_425:228604..231238+ (Clytia hemisphaerica)
CTAGTTCTCAAGTAGAATATTTTCAATGACTGGAAAAAGTCTTCATAGAA
AATTTGGACCaagaaatgaaataaacaaaattttttaaacttaaatCGCT
TCGGAAATTTAGAAGGATTTCAACggtaattattttttatttttttagtt
aaaaGTCTTTTAACGGTTTAAGAGATATGAATTAGTGAATAGTTAAAcat
taaaatatatttcgaGTATAAGGTCTTTGATGGAAAAAAAGCTGAATAAA
TTTCCATTTTGACGGAATTTTATTCAagataaacacgtaaaaagaaaatt
tgtttaatCTAAAGGACGTAGACAAACGAGGTTTTTCTGAAATAATGTAA
ATATTCCAgccctttaaaaatatttatcggTTAGTTAGTTCCTTCTTTAC
AAAAACAACAGTAACTACTGTAGTATTGATACCATTAATACGTACGTATC
ATCTTtaagcataatttttttttcgtcgtcattGGGATAAAATGTCGAAG
GGAAGATTAatccttttttaaagattatcaaAGAAGAGGATGTATGatta
tcaaagaaaatttgaaaccGAAGTTATTTTTCATATCATACATCGTCACT
TTAGACAGTCATACTAAAACTCCAAAGAGATTCGTCTCGTCGTGAAATAC
CTCATCTCACTCAATCACtaataacaaaaacaaagtgtaagatttcaaaa
aagggACACTTTCGTCATCACTCATGGGAACTTTGCGGGGcgaatcaaaa
catttgagGTATTTTGAGAGGATTCTTCAAAAATGTATGTACTATAatct
atttttaagattttcgagTGTGTAGGGTTTGTTTTGTATCTTTTAAGCGt
atattatttcaaaattgcGATTGCAAAACTTACCAACAAAATTTAAATCA
GCTCttccaaaaaacaaaagttatgctcaatacTTCTTCCATTTCTTGCA
GAATGAAGGACGCTAACGATGGTCTTAGATTGGAAGGCAGCGAAGACCTT
GGTTACCATCTTTCTAGTTGGGATTATAGGTAAGATCTATATCTTACGAT
ATACATACTTTTCAATAtgaacaattttatgagaacaGGAGGCTCCACTT
TTGGCAAAAGCTAAGAACAATTCAGAAACAATTCCAAAAAAtgattgatt
cagattgattgaTGATTCAGCAATTactaaaaaatgctgatttcaaaCCC
CTTTTAAGCCAATTAGTAAAGTTAGCACAATAAGAAGTACAATGGCACCT
CTGATTAGTTGTTCACCATTTAAGAAGTTTTTAATTTCGGGCCCAAATCT
CGGAATTAaaccacaaaacaaaaacaccCGCCTCTGCAagaattttctat
ttcttataaaaaaaacaagtttccCTTTAGCTCTGTCTCcaaataaatct
tcaaaatctcTTTTCAGCTGCAAGCTTTCCCAATCCAATAGTTCAACAAG
CTGAGGTACAAGTTCATGTACATGAAACTTTGtatttgaatatttctttg
CAAAATCTGACAACTGGCGACACAATAgtaatatttgaaattttggctgg
TAAGGAAATCATCAATAATATTGATAAGGATACAGGTAATCCAGAAGAAC
TAAAAAGGGTGTATCCTAAGCCAGATAATGTTTTCGGTGATCGCTTGGAA
ATCATATTTTCACCAGAAGAGCAACGTGTAACTGTCATCATAAAGGATAT
GCAATACCAACAGGATGGAATGAAAATCGTGTCAGTTTTAGTCAATCGAC
GAAAACAAGGGGGTTTCAAGACAGCTCAGAGTGCCACCAACATATCAGTT
ATTAGTAAGAATGAATTCTTTCATTATCATttatcaaataataaagtatG
ACTACTCATTTTCGGCGGATATAAACATCTAAAAGTCTATTTCGAAAATA
TTGGCAGTCCGCACATTTTGATATGTGCTCTCGAAGGAGAAACGATATTA
AAAGtaacattttgatgaaaagatAATCTTAAACGGACAATTTTAAGACT
TGAAAATCTTTTAGCCTACTTTGAAGGGTGTggaatgtgatttttttttt
tggaccagaCTTTATCAGGATACGAGGTTAACGATTGGCTTCGGAAACCA
AGGTTCAAATCTTTAAGAGTACGGTGTTTAGGTCACATAAAGCTATATAA
TAGTTAtcagacagttgcgagtacaatacaagaaatattttgcgAGTTCC
GAGATTATTTTGCATATTATTCACAAAAaatcggaacgagtaaaatattt
ctgtATTGTACACGAGCTTGCGTCCGATAACTGGTTTATCAGTGAAccag
aaaatgcactttttgtactctttttaccaatcagattgctgatatttttt
ggatcactGATAAAAGGGAGATACCATCTAGTATTTTGAAAGATTGTATT
GCATATGTATTTCTCTCTCCAATACTATTTAAGGTGAACCAAATGCAAAC
TCATCACCATTAGCAATGAACAATACGCAATATCAAATCGATGCTGGTGA
AACTTTGAATCTGACTTTGATCATGAGTGGCAACCCTCAACCTAACGTGA
CATTTAAGCTTGAAGATGAGCAGCTCAATGTTTTGGTAACAgagatttca
aaattaaatcgCACGTATAAGTATGAAGTACTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040673XLOC_040673Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064847-exon-scaffold_425-1491911889:228604..228728TCONS_00064847-exon-scaffold_425-1491911889:228604..228728Clytia hemisphaericaexon
TCONS_00064847-exon-scaffold_425-1510915933:228604..228728TCONS_00064847-exon-scaffold_425-1510915933:228604..228728Clytia hemisphaericaexon
TCONS_00064847-exon-scaffold_425-1575043694:228604..228728TCONS_00064847-exon-scaffold_425-1575043694:228604..228728Clytia hemisphaericaexon
TCONS_00064847-exon-scaffold_425-1491911889:229555..229632TCONS_00064847-exon-scaffold_425-1491911889:229555..229632Clytia hemisphaericaexon
TCONS_00064847-exon-scaffold_425-1510915933:229555..229632TCONS_00064847-exon-scaffold_425-1510915933:229555..229632Clytia hemisphaericaexon
TCONS_00064847-exon-scaffold_425-1575043694:229555..229632TCONS_00064847-exon-scaffold_425-1575043694:229555..229632Clytia hemisphaericaexon
TCONS_00064847-exon-scaffold_425-1491911889:230021..230407TCONS_00064847-exon-scaffold_425-1491911889:230021..230407Clytia hemisphaericaexon
TCONS_00064847-exon-scaffold_425-1510915933:230021..230407TCONS_00064847-exon-scaffold_425-1510915933:230021..230407Clytia hemisphaericaexon
TCONS_00064847-exon-scaffold_425-1575043694:230021..230407TCONS_00064847-exon-scaffold_425-1575043694:230021..230407Clytia hemisphaericaexon
TCONS_00064847-exon-scaffold_425-1491911889:231037..231238TCONS_00064847-exon-scaffold_425-1491911889:231037..231238Clytia hemisphaericaexon
TCONS_00064847-exon-scaffold_425-1510915933:231037..231238TCONS_00064847-exon-scaffold_425-1510915933:231037..231238Clytia hemisphaericaexon
TCONS_00064847-exon-scaffold_425-1575043694:231037..231238TCONS_00064847-exon-scaffold_425-1575043694:231037..231238Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_425supercontigscaffold_425:228604..231238 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0608538	0	0	0.100151	0	0	0.0760018	0.768022	0	0.346632	0.554877	0	0.925073	0.623252	1.58818	1.46552	1.09316	1.14115	0.160798	0.571844	1.41081	0.900315	3.21889	2.85574	6.65307	4.85812	0.14004	0.623365	5.01604	3.91094
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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