TCONS_00064905 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064905
Unique NameTCONS_00064905
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064905 ID=TCONS_00064905|Name=TCONS_00064905|organism=Clytia hemisphaerica|type=transcript|length=494bp
CGGTTTTAAAGTTTGTTCGGTTTTAAATTGACAGTACGATCAGAAGTTAG
TAAAATGTCGGATGTTGTCCACGCTGAGACAATCTATTCATACTTCGGTG
AAAAAGATGGTGAGCTATCATTCGAGACTGGTGCCGTGTTAAGAATTCTC
GAAAAGTTGAACGGTGATTGGTGGATCGCCTATGACGAATCGCGTTGCAT
TAAGGGTCTAGTACCAAgagaacatttgaaagaaattgaaagtATCAGCA
GCGGTGTGAGTGAAGATTCTAACGTAAATCTTCCCTTAAGGGAGTCGTTT
ACTGAAGAGTCTTACATTCCCTCTGATATTGAATACAAGGGAGGCTATTC
AGATGAAAGAGAGATTTCTTCGGATGATTCGGCCCTTTGTGAAGATGGTT
ATATGCATTCCACTGAGAAAAAATCCTTGAGTAAGAGTGTGGAAAGCATT
TATGAGATTTCAGAAGACGGTTTGTACTATGGAGCGAATGATTC
Run BLAST on NCBI

protein sequence of TCONS_00064905-protein

>TCONS_00064905-protein ID=TCONS_00064905-protein|Name=TCONS_00064905-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MSDVVHAETIYSYFGEKDGELSFETGAVLRILEKLNGDWWIAYDESRCIK
GLVPREHLKEIESISSGVSEDSNVNLPLRESFTEESYIPSDIEYKGGYSD
EREISSDDSALCEDGYMHSTEKKSLSKSVESIYEISEDGLYYGAND
Run BLAST on NCBI

transcript from alignment at scaffold_425:389389..389882

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064905 ID=TCONS_00064905|Name=TCONS_00064905|organism=Clytia hemisphaerica|type=transcript|length=494bp|location=Sequence derived from alignment at scaffold_425:389389..389882 (Clytia hemisphaerica)
GAATCATTCGCTCCATAGTACAAACCGTCTTCTGAAATCTCATAAATGCT
TTCCACACTCTTACTCAAGGATTTTTTCTCAGTGGAATGCATATAACCAT
CTTCACAAAGGGCCGAATCATCCGAAGAAATCTCTCTTTCATCTGAATAG
CCTCCCTTGTATTCAATATCAGAGGGAATGTAAGACTCTTCAGTAAACGA
CTCCCTTAAGGGAAGATTTACGTTAGAATCTTCACTCACACCGCTGCTGA
TactttcaatttctttcaaatgttctcTTGGTACTAGACCCTTAATGCAA
CGCGATTCGTCATAGGCGATCCACCAATCACCGTTCAACTTTTCGAGAAT
TCTTAACACGGCACCAGTCTCGAATGATAGCTCACCATCTTTTTCACCGA
AGTATGAATAGATTGTCTCAGCGTGGACAACATCCGACATTTTACTAACT
TCTGATCGTACTGTCAATTTAAAACCGAACAAACTTTAAAACCG

Coding sequence (CDS) from alignment at scaffold_425:389389..389882

>TCONS_00064905 ID=TCONS_00064905|Name=TCONS_00064905|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_425:389389..389882 (Clytia hemisphaerica)
ATCATTCGCTCCATAGTACAAACCGTCTTCTGAAATCTCATAAATGCTTT
CCACACTCTTACTCAAGGATTTTTTCTCAGTGGAATGCATATAACCATCT
TCACAAAGGGCCGAATCATCCGAAGAAATCTCTCTTTCATCTGAATAGCC
TCCCTTGTATTCAATATCAGAGGGAATGTAAGACTCTTCAGTAAACGACT
CCCTTAAGGGAAGATTTACGTTAGAATCTTCACTCACACCGCTGCTGATa
ctttcaatttctttcaaatgttctcTTGGTACTAGACCCTTAATGCAACG
CGATTCGTCATAGGCGATCCACCAATCACCGTTCAACTTTTCGAGAATTC
TTAACACGGCACCAGTCTCGAATGATAGCTCACCATCTTTTTCACCGAAG
TATGAATAGATTGTCTCAGCGTGGACAACATCCGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040710XLOC_040710Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064905-proteinTCONS_00064905-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064905-exon-scaffold_425-1491911889:389389..389882TCONS_00064905-exon-scaffold_425-1491911889:389389..389882Clytia hemisphaericaexon
TCONS_00064905-exon-scaffold_425-1510915933:389389..389882TCONS_00064905-exon-scaffold_425-1510915933:389389..389882Clytia hemisphaericaexon
TCONS_00064905-exon-scaffold_425-1575043694:389389..389882TCONS_00064905-exon-scaffold_425-1575043694:389389..389882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_425supercontigscaffold_425:389389..389882 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.124483	0	0	0	0	0	0	0	0.209799	0.129935	0	0.0829052	0.0827899	0.515869	0.0706857	0	0.0934491	0.0957824	0.793971	1.52319	0.120358	0.880593	0.57092	0.648812	0	0.119281	0	0	0.829001	0.70385
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001452SH3_domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064905 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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