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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064951 ID=TCONS_00064951|Name=TCONS_00064951|organism=Clytia hemisphaerica|type=transcript|length=2185bpRun BLAST on NCBI protein sequence of TCONS_00064951-protein >TCONS_00064951-protein ID=TCONS_00064951-protein|Name=TCONS_00064951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp MKKYDGKQSYAGGVPGSIMDDDDTRAISPSNNLFQQKLEQQRQRTAAKQRRun BLAST on NCBI transcript from alignment at scaffold_427:58279..64754- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064951 ID=TCONS_00064951|Name=TCONS_00064951|organism=Clytia hemisphaerica|type=transcript|length=6476bp|location=Sequence derived from alignment at scaffold_427:58279..64754- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_427:58279..64754- >TCONS_00064951 ID=TCONS_00064951|Name=TCONS_00064951|organism=Clytia hemisphaerica|type=CDS|length=20925bp|location=Sequence derived from alignment at scaffold_427:58279..64754- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00064951 vs. Swiss-Prot (Human)
Match: TUB (Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 SV=1) HSP 1 Score: 427.557 bits (1098), Expect = 6.291e-141 Identity = 193/262 (73.66%), Postives = 230/262 (87.79%), Query Frame = 2
Query: 653 DIEVGDVNEFILRPAPQGQTIKCRITRDKKGVDRQMFPTYFLHLEKDDGKKVFLLAGRKRKKSKTSNYLIAVDPIDLSRAGENFVGKLRSNLVGTKFTCFDGGRSPKKGGVLT-DGSNLREELCAIIYDTNVLGFKGPRKMTVVIPGMGLDHQRVPIQPQNENECLLERHRTKHMENLIALQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQVVHENDQDYIVMQFGRVADDVFTMDFNYPLCALQAFSIALSSFDGKLACE 1435
D+EV D+ EF LRPAPQG TIKCRITRDKKG+DR M+PTYFLHL+++DGKKVFLLAGRKRKKSKTSNYLI+VDP DLSR G++++GKLRSNL+GTKFT +D G +P+K T + LR+EL A+ Y+TNVLGFKGPRKM+V++PGM + H+RV I+P+NE+E LL R + K+ E++I LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQ++H ND DYIVMQFGRVA+DVFTMD+NYPLCALQAF+IALSSFD KLACE
Sbjct: 245 DVEVQDLEEFALRPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVSIRPRNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 506 The following BLAST results are available for this feature:
BLAST of TCONS_00064951 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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