Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064963 ID=TCONS_00064963|Name=TCONS_00064963|organism=Clytia hemisphaerica|type=transcript|length=620bp NNTGACTTTCAGACCGAATACAAGGCTTACAGAAACAGAAACAATGTCTC CAAAACTTTCTCCACAAACCATGACTCATACTATTGTGAAAATTTTGCAT TCTCTTGCATTACGTTACTCCTTGAGAAAAGTCCGTCTACTTTGCATTCA TACAAATTACTACATTATTTGGCTGATTCCAAGTTCGGTTTCATGTTTGA AAGACAAGTGCCCAACTTTCAATTGTGTAAACAAACGGCCGACATTTTGT ACCCAACCAGTGTCCAGTTTTCCGTTCAACGGTTGTGTACGACCAACATT GAGTCTTTTGATCAAGAAGTCTATGCTTTGTATGAACGCTTGCTGGATAG TGGTACATTTGATGAATCATACTCATTTGCAAAACTTCACAGTCTACCGG AAAGTAACATCACTTTGCAGAAGCTTCGGCACGAACTGAAATTACTACGC AACAAGGAATGCTGGGTAGATTTGGAATCGCGTTGTAATTTTTGGAGATA TGCACATCGCACGTTCACAGAAATGGATTGTCTTCCTGAACTTTCTGCTC AATTTTTCGAGCGGCTTCAATTAATAAAGTCGAATGAAACATCAACAAAG ACAAGAAAAACATCATTCAT Run BLAST on NCBI transcript from alignment at scaffold_427:299033..303058- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064963 ID=TCONS_00064963|Name=TCONS_00064963|organism=Clytia hemisphaerica|type=transcript|length=4026bp|location=Sequence derived from alignment at scaffold_427:299033..303058- (Clytia hemisphaerica) NNTGACTTTCAGACCGAATACAAGGCTTACAGAAACAGAAACAATGTCTC
CAAAACTTTCTCCACAAACCATGACTCATACTATTGTGAAAATTTTGCAT
TCTCTTGCATTACGTTACTCCTTGAGAAAAGTCCGTCTACTTTGCATTCA
TACAAATTACTACATTATTTGGCTGATTCCAAGTTCGGTTTCATGTTTGA
AAGACAAGGTGAGTTTGATTTGTTCATGCTCGAAGAAGGATGTTTTTTTA
CAAACACCAAATTTGTCGGCCTTAATGAAATTAGCAAGTTTATGTTTTGG
AGGTAAGTCGATATAAAGCAAAGTTGAAATGTCTCAAATATTGCGGTCCA
CCTTGCTCGACAACGGTAAAAACACCAATGTCGTCATCTGTTTAGGTAAG
CGAAGGTGATATAGAACCGCACATCAACTATCGACTTTGTTTTTGCGCCG
ACTTACGACACTTACCCTCACCCTCGATATCCTCCGATACATAAACTTGC
TTTTCTCAAAGCAAATTCGGGAAAAATCCCACTCCAATGTAACGACTTCC
CATGTTTGCTTGGAGTTTTTCTTTTAGATTATTTCGCGTCCACATTTAGA
TTGCATGAACTTTCGACAACTTTATAGTTTTGTGCGGATTTTTGTCGATT
TTTTCGACCTTCATGAAAAGGATTGTACCTCATTCGGTGAATTCTTTGGG
CAGTGGGAGGCCTTTAATCAAAGACATATCACCAACCCGTTTGTTTTAAG
AATTCATAAGAATTTACTCAAGCCAAATACCTGAAAAGATTCTTTGACAA
TAAATTTTTTTAATTTTTGTCATTTTCTCAGTGCCCAACTTTCAATTGTG
TAAACAAACGGCCGACATTTTGTACCCAACCAGTGTCCAGTTTTCCGTTC
AACGGTTGTGTACGACCAACATTGAGTCTTTTGATCAAGAAGTCTATGCT
TTGTATGAACGCTTGCTGGATAGTGGTACATTTGATGAATCATACTCATT
TGCAAAACTTCACAGTCTACCGGAAAGTAACATCACTTTGCAGAAGGTTT
GTTTCATTTAACCGTCTATAATTCGTCTAATACAGTAATATGGGTGTTAT
ATGATAATACAATAATTGTTACGGGATAATATCAGTTTGATTACATTTTT
GTCCGAATTACCTTAAGCGGATTTATTTTTGCGTTTTTCGAGAATTTTCA
TATTTTCACGGAAAAGTTTGGAGACCCTTGATTCGCAAATTCCACGCGAA
TTCTTTAAATTCTTGTCTCGCAAAAATTAATCCACGTGAAAATTAATCCA
CCTAATTCAGCTCCAAAAAGAGGGAAAATGGACTGTTTGGTTCTTTACAT
TTTAATTCTGAACGTTTTTTCCATGAACTCATTTCATCAAAATATCGCTT
CCTGAAGGTTCTTTGTCGGTGCCCAAATGTGAAAAAACAGCCACAAGATG
GATTCTATACTAAATTCATGAGAGATTTATTAAAGCTTGAATGCAACCAA
ATGAAATGTTAAGCCCATAAAGTCAACTAAAAATGTTGAAAATAAAATAG
AATTGAAGATTTCCTTCAAAATAAACAATCCCAAAATAATCTTTTATTGA
ATTATGCCAAGAACTCATTCGGCGACTTTTATCGCAAAAGACGAATCTTT
GTGTCGACCAACCAACTATCTCGTACTTTCGCTTTTCACTATATTCTTTT
CTATCTTTCTACTCCAAAATATAATAATTTCACCTTTTAGCTTCGGCACG
AACTGAAATTACTACGCAACAAGGAATGCTGGGTAGATTTGGAATCGCGT
TGTAATTTTTGGAGATATGCACATCGCACGTTCACAGAAATGGATTGTCT
TCCTGAACTTTCTGCTCAATTTTTCGAGGTAAAAATTTTTATGTTTTTTA
TGTTTTGATTTAGATTTGCTCTTTTTTCAATTTTCTTTAAAATTATTTTG
TTTTGTTTTGAAAAGAATTCGAATGTCATTAGTTATTAAATATGATTGTC
AATTACATTCGAAAAGACATAAAAGAAAAGAGAAAAAAAGAGCGAGCGAG
CAAGTCAAGGCAGAAATTAAAATTGGGCTCTTCCAGAAAAAATCCGTTCA
TGGGGGGTGGAGGATATTATTTTTTTCATGAATTACCCCTGGACATTTTG
ATTTTTAACACCATGGACATGGGTTATACCCCTGGACAAACATTAAATCA
ACCCCGTGGACACAAAAAATTACCCCTGGACATTGCAATTGTTTGGTATT
TTTTCAATACCCCTGGACAATTCATCCTCCACCCCCATGAACGGATTTTT
TCTGGAAGAGCCCATTGCTTAAATGTAGATGGGTGTTTAATTTCAAAACA
AAGGCCGAACGAAGTCTAAACCAGGCTCTATCAACAAAAACATTGCGAAA
ACGAAAGTAACACACGGACAGACAGACAAACAAACAAAGTGACATACAGA
GTACGGCTATTAATATATAGACTAGACCACTAGACCTAATTTTTGTTTTA
TCTGTCGAAACATGAAGCACAATTCATTAAAACGAGGACTCTAGAAACGT
GCTTAGTAGTTAAAAACCATAGCCAACTGATAATTTTGTCAAATAAAGCA
TTGATTATTTAAAGTGACAACATGAATTTAGTAAAAGATGTTATAAAAAA
CAGAGTATACATCATTCAGGCAAAATATTTTATGAAAAAAATAATTGAGT
GCCCTTTTCAATACCGAGGAAAAATTTAGACCGAAAGTGAAATTTGCCAC
TCAATAAGTTTCTAAATTGACAAATACTAATCAAACCTGATTTATAGTTG
GATTAAATGAAAAATACTGCAAAATGCCCCTTGACCGACATTCGAAAAAA
CAAGGGATAATGTAAATCTCCTTTCCAAGCCAAAGTGTTTTCACTTTCAA
AACAGGCGAATTTAACCAGCGAATAAATGACAAAAAGTTTTACATGAATC
AATTTTCACCACATACAGCAACATTCATTTGATCGACCAACATTCGAAAA
AACAAAGGATCATACAAATCATCTTTCCAAACCATGATATTTCTTTTTTC
TTTCAAAACAGGCGAACCTTTTGTCTTATAATCAGTGACCAAAAGTCTGA
CGCTTTGTGAAGTGTTAGTTCGCTGAACACCTGCTTTTAAAATGGATATT
ACCTCATAGTCGCCATACAATTCTGTCCAAGTGGTGACTAACCCGTCCAA
ATCCAAACCAGCATTGAAACACCATTGCAGTGAGTTTATAACTGTCGTGT
AAAGGTCAATACCTGCACCTCCCAGAGTCAAAATTACATTTAATGTGGTA
TAATCATTCAAACATAAATGTTTAAGACGACCGAAAAATTCGATCTTTTT
ATAGTTAACATTTTTCACCAAATCTAGCACGACTTTCATTAGGTGCTTAT
TTGTTATTGGTAGCCTTGCAAATAAAAATTGTTGTTTCGGTACAAAGGCT
TTTAAAAGTGAGCAAAAATAGCCTTCAGATATACTATTAGGAGCACGACC
TCCATTACAATGTATTAAAATATTATAATGTTTTTCATTTTGCAGTTCTT
CTAATGCATTTGCTTTCTTTTTCTCGTCATCTTTCCTCGCATAATAACTG
TTGATAATGAGTAATTGGTAGTGCAGATATACGATAGTTTGTTTGATAGC
CCCATTGCCTGAAGGGAGTCTTGATATAAATACAAGAAAATCACTAATCT
CGATCATCGTCAACGCAGCCACTTCATTTTCCAAATATAACATAAGGTTA
TTTTCTTTTAGTTGAATCGATCTTTTTCTGAGATGTGAATACATCCAAAC
CTCTGTACATGGTATTCGCAGTAACTGTGAGGCGAGCTGGTATAGGTTTG
TCGGGTCATAGTTTTCAACATTGTTCCAAAAGTTTCTAGACACTCCGATT
GAGCTGAAGTCAAGAATCACGGTCACATTTCTTGTTTTCAAACAATAAGT
CCTCTGTTTTTGACCAGCGGCTTCAATTAATAAAGTCGAATGAAACATCA
ACAAAGACAAGAAAAACATCATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00064963-exon-scaffold_427-1575043694:302851..303058 | TCONS_00064963-exon-scaffold_427-1575043694:302851..303058 | Clytia hemisphaerica | exon |
TCONS_00064963-exon-scaffold_427-1575043694:302013..302227 | TCONS_00064963-exon-scaffold_427-1575043694:302013..302227 | Clytia hemisphaerica | exon |
TCONS_00064963-exon-scaffold_427-1575043694:301181..301318 | TCONS_00064963-exon-scaffold_427-1575043694:301181..301318 | Clytia hemisphaerica | exon |
TCONS_00064963-exon-scaffold_427-1575043694:299033..299091 | TCONS_00064963-exon-scaffold_427-1575043694:299033..299091 | Clytia hemisphaerica | exon |
TCONS_00064963-exon-scaffold_427-1510915933:302851..303058 | TCONS_00064963-exon-scaffold_427-1510915933:302851..303058 | Clytia hemisphaerica | exon |
TCONS_00064963-exon-scaffold_427-1510915933:302013..302227 | TCONS_00064963-exon-scaffold_427-1510915933:302013..302227 | Clytia hemisphaerica | exon |
TCONS_00064963-exon-scaffold_427-1510915933:301181..301318 | TCONS_00064963-exon-scaffold_427-1510915933:301181..301318 | Clytia hemisphaerica | exon |
TCONS_00064963-exon-scaffold_427-1510915933:299033..299091 | TCONS_00064963-exon-scaffold_427-1510915933:299033..299091 | Clytia hemisphaerica | exon |
TCONS_00064963-exon-scaffold_427-1491911889:302851..303058 | TCONS_00064963-exon-scaffold_427-1491911889:302851..303058 | Clytia hemisphaerica | exon |
TCONS_00064963-exon-scaffold_427-1491911889:302013..302227 | TCONS_00064963-exon-scaffold_427-1491911889:302013..302227 | Clytia hemisphaerica | exon |
TCONS_00064963-exon-scaffold_427-1491911889:301181..301318 | TCONS_00064963-exon-scaffold_427-1491911889:301181..301318 | Clytia hemisphaerica | exon |
TCONS_00064963-exon-scaffold_427-1491911889:299033..299091 | TCONS_00064963-exon-scaffold_427-1491911889:299033..299091 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_427 | supercontig | scaffold_427:299033..303058 - |
Blast
The following BLAST results are available for this feature:
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