TCONS_00064964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064964
Unique NameTCONS_00064964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1681

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064964 ID=TCONS_00064964|Name=TCONS_00064964|organism=Clytia hemisphaerica|type=transcript|length=1681bp
TCAGATACATCCTGAAAATACAAATGATAGTCCATTCGCTATCGAGAAGA
CATTACTACAAAGTGCTTTAAAGGCATATCCAAAAGTCCATGATGCTTTA
TATTCGTATTCAAATGATCTGGAAAATAAAGATGTTACTATGTACAGGTT
GTTACAGGACAATACTCAACTGGAAATTCGTCATTGGTTTGGTTGGCAAT
CTAATAATTCGCTGGCTATTGAAGATGAAAACACCTTATCTGAATTACCA
CATTTCTCGAACCCATTCCTCTCGGAGCGTTACGCTGTGGACGTCAAGCT
GTCCTATGATTATTATTTGCAGCAAGCAAGACCAATGCATGCTTTCCTTG
TTTACATGAAAAATCGCACGCATACAAGCGAGAGCATCGACGCCGTCACA
TCATCAGTATGCAGGCTAGCCATCGAAAATTACGATTCAGCCATCATCTC
AACGTCCTGTATTCTTTTCATGGAGTTGATAGAAGGCCCGTATCAATTAT
TGAAGGTGGACGTCAAAGCTGCTGTTCTCATCTCAAAGTATTGGAACAAA
AGAGTTTCTTTCGAGAAGAAAACAAACGCACAAGACGTTAAGACGTTGCT
AAtTGATTTATTATTGGCAAAGAAATCAAGAGAGAACCTCATTACCCTTG
TCAGCCATTTGGAAGACTGCATCGAAGTTGCTATTCAcgaaaataaggaa
attgacAGgtTTTCGTTCGAAGCTATATGTCATTGGAAGATAGCCATTCA
ATTTTGTCGTCTTCATCAGCTGCCCTTGACCACGTGTTTCGTCAAATCGT
GTTGTCAAACGGATAATTGGCTTCCTTTATTCTTGTTCATTCAACTGTAT
CAAATACCACCAACACAGATATTGGAAGTTATGGAAGAGTGTATGTCAAA
CAACTCACTGAAAGAACATCTTCTGGCTATTGTCAAGAAATCTCGAGAAA
TTGCTGACGgcaaaacagaaaagaaaaggaaaacttCAAAAGTGAAGAAA
GAAACGCAACAAAACCCTAATACCCTCGTTGAACAGAAATCGAAACACGT
TAAGAAGAACTATCGTGCTCAATTTTACTCGAAACTTGGTACCACTGGTT
TACCCTCCTCCAGAGGGAGTGTCAGTGAAAATCCTCGTGAGTTGGCTACC
TCGCCATCAGATGAAAACATGACGAGAATAACCAATCATCTCCCGATGAC
ATCGACGCCGAAGAAAGATCAAGTAGATGGCAATAACCAGGGACATGGTC
AAAAGCTGCAGCATGGTGACGATTTACAACTTTTAGATGATACACATTTC
CAAGAGATGTCGGAAATTCCTAATAGTAACAATTTGGTCGATTTGCTCCT
ACAATGTGATGACAACAATACACCATGGAGAAAATTACTGGCTTATTCGC
TGGCTGTTTTTAACCCACTCTTAACTGTATTGGCCGCTTGTTATGAGGAA
GCTGATTGTTGGGAGTGTCTTTGCGTTTGGTATGTGTGTAGTGTGAATGA
AGAAATGAGATTCAAGATATGCAGCAGTATACTTGATATCAAAGATGAAG
ACGCAATTTTGATGCTTCGGAATCATCGCTGGTCAAATGAAGATCTTTTG
ACAATTGTGAAATGTTTGTTGACTGAAGGTGTCAAATACGCAAAGCTCAT
TTGTcatggttttatcattttcaGAAAGGTA
Run BLAST on NCBI

transcript from alignment at scaffold_427:303731..317766-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064964 ID=TCONS_00064964|Name=TCONS_00064964|organism=Clytia hemisphaerica|type=transcript|length=14036bp|location=Sequence derived from alignment at scaffold_427:303731..317766- (Clytia hemisphaerica)
TCAGATACATCCTGAAAATACAAATGATAGTCCATTCGCTATCGAGAAGA
CATTACTACAAAGTGCTTTAAAGGCATATCCAAAAGTCCATGATGCTTTA
TATTCGTATTCAAATGATCTGGAAAATAAAGATGTTACTATGTACAGGTT
GTTACAGGTAATTCTTCGACAAACTACCTTAATTTTAGAGGGTGCTAAAA
ATCAGCCATATGTGTGGGAAAAGTTAGAGTCTCAAAATTTTCATACGGTG
GTTGCAGAGAACTTTTTTTGATTTTTTTAATTAGGGCAAAAACAGCCGGA
TTTTGGCCAAACAACTTCATTGTAGATCAGCTTTCAACCCTTTTAGTGAA
CCCTCTACCCTAAAAAGTCATGAATAGGTCATTTACCTCTAGTGCTTCTA
CCCCTGGGGTTTTGAAATGTTTTACTAAGTCAAGTTGCCAATTCGTTTAA
TTGATACTTACTTTTTTACTCGTTTCAATACACCTTTTCGACCGTAGCCG
TCAATTGCAGTGCGAGCATTTCTTTGTCCGTTTTACTGCCCTAAAACCGT
CCCAGTCTTTTTTTTGCGCCTTTAGAAAGACACTAGAAAAAAGTATAAAA
AAGGATTGGATCGAGTTTAGGGTGGTAAAAAGTGGGACGTGCCTGACCGC
GCGATTACGGTCGAAAAAGTGTATATGACTTACTTTTTCACTTGTTTCGA
TAAGACTTACTTTTTCACTTGTTTCAATAGGACAATACTCAACTGGAAAT
TCGTCATTGGTTTGGTNTTTTTCACTTGTTTCAATAGGACAATACTCAAC
TGGAAATTCGTCATTGGTTTGGTTGGCAATCTAATAATTCGCTGGCTATT
GAAGATGGCGAGTTTACTTAGATTTATCACTCACCCGAGTCACAGAAAAG
TTTAGCCAAAAACACAATAATCCGTTGAGAAAAATACCTAAAAATCTTAT
TTCCGTTGAGAAAAATATCTCAACACCCCATACCTTTTTATTTTTGTGAA
AATGGAATGAGAAGATTTCCCTTGAAAGGAGGGTTTTAAGATCGGTGTAG
GACTGGAATCTTTTATTTTTCGGACCGAATTTAGGAAATTAGATCAATCG
TCGTAGACGGAAAATTGGGCTGTTTTAGTCTAGAAAAACGGAATTCAGCA
AAAAACGGTCAGATTTTTTCGGAAATAGGGTTAAATAATTAAAATTTCCC
GAATTTCTGACGGGATTTTTTTTTTAACTCGTCTTTTTTAGTTTTAATTT
ACTTTTGTACTTTATTGAACCTTTTCATATTTTCTTTTCTCCGTAGAAAA
CACCTTATCTGAATTACCACATTTCTCGAACCCATTCCTCTCGGAGCGTT
ACGCTGTGGACGTCAAGCTGTCCTATGATTATTATTTGCAGCAAGCAAGA
CCAATGCATGCTTTCCTTGTTTACATGAAAAATCGCACGCATACAAGCGA
GAGGTATTTAACAGAATTCAATGATATAACATTCATTTTCATTAAAATTT
TGTTTTTAATCGTTTCTATTTTTAAATTCTAGCATCGACGCCGTCACATC
ATCAGTATGCAGGCTAGCCATCGAAAATTACGATTCAGCCATCATCTCAA
CGTCCTGTATTCTTTTCATGGAGTTGATAGAAGGCCCGTATCAATTATTG
AAGGTGGACGTCAAAGCTGCTGTTCTCATCTCAAAGTATTGGAACAAAAG
AGTTTCTTTCGAGAAGAAAACAAACGCACAAGACGTTAAGACGTTGCTAA
GTAAGTCCTAACTTTAGAACTAATTTTTGACAATTTTCCCCTAAATTTCA
CCTCTTGTATATAAGTGTAGAAGTATGAAACTTGAGTTATTTAGTAAAAA
GTCTAGATAGCTGAGCCGAGTCGGCTGGTTGTTGACCCCGTGAAAACAAT
CAAAAGACTGCCTAAAAGTCCTAGATTACTTGGCTATTCACGTAATATCG
GCTCTATCGACTCTAAAGTCTGCGACTGCAGTCGGAGGCGATCAGTAGGC
TCCTCTTTCGATAGCTAGCTACTGGAATGTAGTTTTAGGGCGCCACTCTT
TGTCATTGGATTGTTTCACTTTTAATGGAGTACATTTATGTACTTTTATT
GAAAACAAACTTATTTGATATTGTATTTTACCTACATTCAATCAAAGCAT
TTTCTTAATAGAATGCGATTTAAGATAGCTTGGGCCTCTTTTATTTAGCC
TAGGTTGAATGAAAATATTTTTACATAGCGAAGAAAGTGCAACCCCCCCC
CTCCAAAAAAAAAATACTTGGCTTATTAACAAGGTAAAATGTTAAAAAAC
TTTATAGTTACGTTTAGCTTGTAACATTTTAGAAATGATGAATTAATTTT
CTTTCAGTTGATTTATTATTGGCAAAGAAATCAAGAGAGAACCTCATTAC
CCTTGTCAGCCATTTGGAAGACTGCATCGAAGTTGCTATTCACGAAAATA
AGGAAATTGACAGGTACACTCTCTTAAAAGCTTTGGTTTATATGCATCGT
ATATCGATGGGTTAAAGAGAACAACATTGAATAGTTTTCGAAAGTTTGAT
TGATTGAAGTCATAATTTTTCGCAAAAACAATTCCGCAGTGCAAGGTTAT
GATATGTCTGTTTTTTGTTGAACTAGTGATTGACACCTTAGTTTTGCCCA
AAATATTTTCTTAGAAGACAACATAAAGCGTGAAAATCAGCTCCCGCGAA
AATTAACCAATAAAAATGCAAAGCAAAAGTTTATGTTTTCAATAAATGTT
TATCTCCATTTGAATTACCACTGATATTATATAACATTCTACTGCAAGTA
TACTAGTAGCCGAGAACGTGTTAAAAACCAAATTAATTCATGATAACCAT
GACGTTACGTTTTATACGGTGCAACCGTACTACCAAACTACAATCAGCGC
CGAAATATATTGACAGTTTTGGGGATTTTAAGGTTTTCAGAGTTTAAAGC
GCGGGCGAGAATCGTAGTTTCAGTACTTCCACTTTGTTTCATTGGATTTT
TCGATTTTGGGGGGTTGAGTTGCTTTCAGGCTATATTCTCAGCCATATTG
GAATATTTTTGAGCTTTTCGACCCTGAGATTCTGGGCTCGTTATAAGTTT
TCAGTCCCATATTAGCTAAAACTCTATATTTAAACCGTAATTTATAGCAC
TTAAAAATCACTCACTGTTCTAAACTTTTGTACCAAATATTATGGAGGTG
ATTGTAGCCGAGGTGTTAGCAACTAGTTTTATTGTCTAAATTAGAAATCA
GGCAAACAACCGGTCTTTTTTCGGGTGTTTCCGTATAAAACATTACGTCA
TGAATATCACGAATTCAAGGTTCTTTAGTATCCCTTAACAGTGCCGATGA
TAAAAATTACTAAAACTGATTTTTTTCAAATTCAGGTTTTCGTTCGAAGC
TATATGTCATTGGAAGATAGCCATTCAATTTTGTCGTCTTCATCAGCTGC
CCTTGACCACGTGTTTCGTCAAATCGTGTTGTCAAACGGATAATTGGCTT
CCTTTATTCTTGTTCATTCAACTGTATCAAATACCACCAACACAGGTAAA
AACTACTATAATCCCAACCTCGTTCCTGTGTATCCCAGGCTTTAATTACG
TTACTGATTGACGCCAGAAGATGTCAGGGTATTATCTAGCGCTATTAGTA
AGCATTAAAAAGCTGATAATGCACAGGGAACGAGGTTGCTAAAATCCCTT
TTTATACGGCATCTTTATAATATTGTTTGACTAGAGTTATTTATAGTCGG
CGTTATACAGTAATACAGGTGTTATACGATCATTTATGACCATAACGGGA
TAATATTAATTTGCNTAAGAAGAAGGTCAACCATTTCTAGGTAGAGCTCC
AAGTATCCTCCCATGCCTTCTCTCAATTTTGGAATCTCTGGAATCTTAGT
CCGTATATATTCAATGATGAACTCTAAATCTTTGTCATCTGAATCTCCAT
TGAGAAATTCTTTAAAAAATCNATACAGTAATGTTTAATCTTCTAAACCT
GCTAGGATGTGGTATCATCCTGGGGATGTCATAATGCCTTCAATCGTAGC
CATGTAGACACGGTTTGTTTTAGATGTGAGAAGTTTTGATACAGTGTAGA
AAGTAAATAAAAAAAAAGATCTTGTCCTGGCGTTGTAGATTTCTGGTGTA
TGAACAGTCAAAAGCTCCAACACAATTTCTTGTTAAAAAATCACAGTAAG
TGGCAAAGAATACATTTCTCCCATAAGTTGGGCACCCACTCATTTAACGT
TTGCTTCATTGTTTGGATGTCAGTTTCTTCTATTTCCCATCTCTTTTGAC
CGTAGTCATTATGTGAGAAAAAGCTTCGTCTGCGCGTAACGTTGTCGAGT
TTGTCTCTCATCGCTGCCAAAAGATGATTAATCTTCATCCATCTTTCACT
GGCGCCAACATTTTCTGTCTTACCGGATAGACCGCCTGTTGATTTGCATG
CACGATTGACTGTCATTTCAATGACTTGATCACAAGGGATTTTTGTAAAT
GGTTGTCCAGTAAGTGAGACGGTAAAACCGTGTAGCAAAATTTCGTTATA
AAGCTGAGGATGGTCTTCCTTTAGCATTTTCATATGTACATAGCAATACG
TGAGATTTCTGGCATAATTGTGGCGATTGTGGGTGAAACAGTAGGGTAGA
AACTCTTTGATGCATTGCAAGTAGCCATCCCAGTTTGATGTACGTTGACA
GTGAATCGTACTAAGAAGAAGGTCAACCATTTCTAGGTAGAGCTCCAAGT
ATCCTCCCATGCCTTCTCTCAATTTTGGAATCTCTGGAATCTTAGTCCGT
ATAAATTCAATGATGAACTCTAAATCTTTGTCATCTGAATCTCCATTGAG
AAATTCTTTAAAAAATTCCTCAATCCCACTTTCGTCCAGATTTAACTCTC
CCTTGTCTTTCAAGTGATCGACTTTGCTCCGAACGATGGCTTCGTACATG
AGTTTATGTAAGTGGATTGCGTGTTTAACGTCACCACCCTTCAAAGCATT
TGTAATGGTTCCTTCACCACCACATCCACTGTATACAAGCCAAGTTATAA
GTCCGGAATCTTTAAAGCGTGAATAAATTGTTTTCAACATACACATGATT
ACATGAAAACCGCCCATTCGTGGTATCAATTTTGTGAAGATATCAGACCC
ATCAGAATCCATCTTAAACATGACATCAAGGACTTTCGAGTAAATAGCTT
GATCCACCTATGTAAAAACAAAGAAGAAAGCTTGTATTGCTCAGTGTGAT
TTCTAAGATGATTATTACTTTAAGCTAAGTAAACGGTTTGAAGTTAACAA
TATTGAAGTTAAGTTCCAGAAATAGAGTCTGAAATCACAAAAGAAGCTTA
AAATTTGACATACCTCTAAAAACATTTTCTCCAAGTTGAGCTCGTCTAAT
ATGGCCAACGCCCTATCAATGGCGGCATTGATTACCCCCATTTCCGTCGG
TGGAGATGTAAACGGAGGCAAATATCCAACAGATGCCTTTGTTGCTAGAT
CTGATCCATCTTCAAGTAGCTTGAAAAATCCAGTCCACGATGGCACTCTC
AATCCCTCTTCGACATAAAGTTTTGATGCTACGTATCTGGCAACTGCCCA
CTCGCTACTCTTCCTTTTCACATTATTAAGTTCCGTATTGTCATTATCCT
TTTCATACTTGAATTTCTTGCAATTGTTTGCTCTGCTAAACTTTTGTGTA
TCGAAATCCATCTTTGTTCCTTTATAGGCTCTGTGGTTCTTACGTTCAAA
ATTATAATCAGCCTCGACTTCCACTCCAGCTTGCTTGGTATAAAAGTCAT
CCGGTTGTATCAATATGTTATTGGTATTGTGCGTCTGTTTTCCGTGAAAG
TTTTTATTGTCAAAGTCAATATTATCGAATACATAAGTTGGAGTGGTCTT
TGCTTTGACATTTGGAGGAACGAGTTTGGTGCTTTTGTCGACCCACTCAG
CCCACTTGTCTTCAATGAATTTCGCGTCCGTATACGTGATGCCGTGACCA
AGGCGTGATAAATCGGTAACTACATTGCTGGAACCTGTTTTACTGTACTC
AGATAATGATAAAAGTACTTGATTTAATGACGGTGTAGCGTTTGGAGTTA
GAGATTCGATATCTGTGCATAATTTTGTAACTTTCGGCACTTTTGAAGGT
GGCAGTTTTACGATTCCATCCTTTCCATATGAAGCGTCTGGGTAGACAAT
CCAACCAATTAAGTTATATAATAGGTCAGAGGATGGTGAAAGATCGCTGT
TGATAATATCTTGAGGTGTTGGGGGCCAAAGCTTTTCCTTTTCTTTGTTC
GCGGAACCAATAGATCGGCCAATCATTCTACCAATATTTTTGACACTGAT
TGATTCTTCAATGCCTGTCGAGTTAGACATAGCCTCCAAACAATCTGACA
CGATTCTATCGCTCTTCGCCAAAACATACTCCGACTCGTTACCTTTGCCT
CTTTGTAAGAACATTAGCCTATCTCCAAATTTCTCCTTCAATTTACGTTT
TAAGTCTACACTTCTAACTTTAGGTTTTTGTGTTAGTTCTGAAAAGTAAG
ACGACAACTGAGCGAGCGTGTAAATTTCCTGTCTTTTGATGATATGATGT
GTAATAAGTGTGGAAAATTCTTCCTCGAAGTCAACTAAGTCTCTTTTCTC
AGAGTTTTTAGAGTCTTCCACTTTTTTATACTTCGCACGCCAATAAGGAG
TCCTAAAGCTATTATAACAATGTTTGTGATAAGCAACATTGGCCTCAAAT
AAGCTTTTGACAGTACTTGCTAGTAATATTCTTTGAGAAGCAAGCTTATA
ATCTTCGTTATTATATTCCAAATGCAGCTTTGAAAATTCGATCAATGTTT
GTTCTGTAAGATGTCTCTCTTCGTTCTCTTTCTTGTAAGTCATCTCTATG
ACTGGAAGGTCTTTTCCTTTTGCTCCTCTTTTATTTTCGTTACATATTAT
ACATAGCTTCTCCTTGTTATCATTAACTGAAGCATACGAGCAGGACTGGC
GTGTGCTGCGTCTAACGTTTGCTGTCTCCTCCATTTGCATCACGTTTAAA
GAGCTCGGGATTGCACTGTCGATGTTTTCGGGTTGATCTGGAGGCTGATT
TGAGACTTTCCTTTGCGAAGTCATGAAAGATTCTTTTAAAAATTTACCCT
TGCATGATTTATGTGCCATCAGTTCTTTATCTGAATCCCAATCAACCAAT
GACAACACTTTGTTAAATTCGTGATCATATTTGGTCCAATTTTCAGCAAA
CGTTCTGAAATTTGTCTTATGTCTTACTGTTTCAAAGTTACAGCGCTTCG
CATTTCTCTTCAAACAACTTTCGAAGAAGATAGCACAGGTAACTCTACCT
AAATAAATTGATGGTCGCGTCTTAAAAACTGGTTTCGGAAAAACTTTTTC
ACTTCGATTTTCCTTATCTTCTTTCCTTTCCATCTTATCATCACTAAATC
CACACATAAACTAATAAATAACAACTTCTTCTAGTTTTTTTTTAATGTAA
GAAGATATAAAAACATGCAGAAAGTTTTCCGTTTATTTTCTAATGGTACA
GCTGCCAATTGATAGCGAAATAAATAAACATGTAACAGCGCACGAAGAAA
ATGAAAATAAAACACCTTTTCAATAGGTGACTTTGTCAGGCGTGCGTTAT
TAATTANCGATGACTTGAGAATCTACTAGGGTTGAACTGTCGAAAACCGA
AAAAAACAGAGGTTGGAGTGTTTTTCCGGGCGGAGCATGGCTATGTGACT
GACTATTTCCCATTAAGAAATCTCAATTTTAGAAGCTTTTAGAAGGTTAA
TTGGAGCTGTAAGATTTACTCACAAAAGGAAAAGCAAAGCGGAAACATTA
CGGACAATATTTCNATTGATAGCGAAATAAATAAACATGTAACAGCGCAC
GAAGAAAATGAAAATAAAACACCTTTTCAATAGGTGACTTTGTCAGGCGT
GCGTTAATTAATTAATTATCCTCCGAAAAAAAAATAAGAAAAACCTCAGT
TTAATTCAAGTTTTTTGACACTTATATGAATTAATTGTGAAAATAAACCT
AAAATGACGTCATCATTAAGGCTCATTTGCAGCATGACCGGGACATTTTT
AGACCCAAGTTTATATCTCAAATTTACTTGTTTTTTANATTACGGACAAT
ATTTTATAGATATTGGAAGTTATGGAAGAGTGTATGTCAAACAACTCACT
GAAAGAACATCTTCTGGCTATTGTCAAGAAATCTCGAGAAATTGCTGACG
GCAAAACAGAAAAGAAAAGGAAAACTTCAAAAGTGAAGAAAGAAACGCAA
CAAAACCCTAATACCCTCGTTGAACAGAAATCGAAACACGTTAAGGTAAA
AAAACTTATGCAGTGCTTTCACTACTACCTTTACATTTTTTTATAAATTT
GGACTTTAATATACGTTAAATTGCTGAAAGTCTTGGGACAATAGAAAAAT
GTTTATGTTCGCCTTTCTCATTTTTTTGTGACGGGACCTACTGTAAGGCC
GAAGAACTATTTTTGTGTCTGAATGTACGTCAAAAATAGCTGTAAGATGA
TTTACAGTCGATACTCTCTTATTCGGCGTTTTTCACTATACGATACGCTC
CATTATTCGATAATATTGAAAGTCATTGTCAACAAGAAACACTTCTAAAC
GACGATCCACTATTCGATAAGCTCCCTTATTTGATGAAAATCTAAATACC
CCTTGAAAATTGAATTAGAGAACGCTAAAACTATACTTCATTTCATTTTT
ATTGCTTTTTTTTGTATAGAAGAACTATCGTGCTCAATTTTACTCGAAAC
TTGGTACCACTGGTTTACCCTCCTCCAGAGGGAGTGTCAGTGAAAATCCT
CGTGAGTTGGCTACCTCGCCATCAGATGAAAACATGACGAGAATAACCAA
TCAGCTCCCCNAGAGGGAGTGTCAGTGAAAACCCTCGTGAGTTGGCTACC
TCGCCATCAGATGAAAACATGACGAGAATAACCAATCATCTCCCGATGAC
ATCGACGCCGAAGAAAGATCAAGTAGATGGCAATAACCAGGGACATGGTC
AAAAGCTGCAGCATGGTGACGATTTACAACTTTTAGATGGTATGTAGGCT
ATGTCATATTTAGTCTGAATGGCAGACCTCCCAGACCCCGTGCAAAAACG
TGCATGAGCACGGACCCGTTAGCAGATGTCATATCTTTCTTTGTTCCAAG
CTTAAAGCTCCTCTTCATAAGACTTAAGTCGTAAGTCTGGAGCTGCCCAT
TGTGTAGACTAGATTGTTTGCATCTTGGCAGTCGGTTTTCTTTCCTATAA
ACAATAAAAATTTGCAGTAAAATATCGGGAATTTGCTTTTAAATGTTTTC
TTTGTGTTATCTCCTGTTATAATAGCTTTTATGGAATAAAGCTCTGATAT
TTGATTGGTTTCGATTGCAAACTTCACTTTTTTTCCAAGCAAAATATCCC
CTCTTGATAACTTTCTATCAACACGTAAGTAAGTCTTGACCGCAGTCGGA
GGCGACCCGAAGGCTCTTCTTTCAATAGCTATCTACTCGAAGTTAGGAAA
GGGCGCCAATCTTTCTCACTGGATTGCTCCATGTACCCTTGATCCTTCTC
TTAATTGCTGAATATCAAGCTTAAAGGCGTCATGTACCATTTTTGTACTA
AGTTTATAGTCTTTGGTATGACCCAGCCGAGGATTGAACCCACGACCTTG
CGCACTGTAGACGGATGCTCTACCACTGCACTACAGTCGCTAACAACACA
ACTTTATTACAATAATACAGTTGGAACATTCACTTTTGCCCTCTTAAAGC
TTTTTTCTATCAACAGATCTTTACAATAATACAGTTGGAACCAAAATTTA
CTTTTGTGGTTTCAGATACACATTTCCAAGAGATGTCGGAAATTCCTAAT
AGTAACAATTTGGTCGATTTGCTCCTACAATGTGATGACAACAATACACC
ATGGAGAAAATTACTGGCTTATTCGCTGGCTGTTTTTAATCCACTCTTAA
CTGTATTGGCCGCTTGTTATGAGGTAAGTTTTGTAAAAAAAATTGCCTTA
CATATAAGTTATTTATTTACAGAATGATATTCTTATAAGAAAACGTGAAT
TTTTTCGAAAGTCTATGTTCACAAATTGTCGGAACTTTTTTATGTTAGAC
AATAGAAATCGATAAATGTGAAAACTNAAAGTCTATGTTCACAAATTGTC
GGAACTTTTTTATGTTAGACAATAGAAAGCGATAAATGTGAAAACTCTTT
CATCTTTTCACTCTGGCGAAAGTGGGCGATAGTGGGCGATAGAAAGCGAC
ACAATATTTTCACCAAAAGTTAAAAAATATTTTTTTCACTCACTTTCTGT
CGCTTTCCATCGGTTCCCAGTGGGAATCAAGCTTTTACCGTATATAACAA
AATACTAAATTTGCTAATTTTTACTTTGCAGGAAGCTGATTGTTGGGAGT
GTCTTTGCGTTTGGTATGTGTGTAGTGTGAATGAAGAAATGAGATTCAAG
ATATGCAGCAGTATACTTGGTAAGATGTCTAGACAGTTGCACGGTTTTTT
ATAAGAACCTCCAAAATTTCTTAGAAACGTTCTTAACTTTTTGAGTTTTA
ATTTTAAAGATGTTCTTAGCATGTTCGTGCTTTCGCCATATTTTGAGTAG
TTTTGTCCATTTTCCTCAGAAATTGGATCTTTTAGAGTCCACAAAGCCTT
AAAATGTTCTTAACTTGTTCTTGATAATTTGGCCATCGAATCCCCAGGTT
CTTATATACTTTGTTTTTATAAAAAAAGCGTGAATAATACGTAAAGATTA
GGAACTCTGTGTTTTTAAAGTTTTGTTCGGAGAACATTTACGACTAGAAG
ATCAGAATAATCGAGGCAACCCTTAAGCTAAGGCTGCACTGATAAGTTTT
TCAGGTGACTACAATGTAAATTTTGCAGGCCCTTGTATATTTTTCCGTAA
CAGGGGGGGATACAGCCGCAGGGTACTAACCCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGTAGTCTTTGGTATGACCCAGCCGAGGATTGAACCCACGACCT
TGCGCACTGTAGACGGATGCTCTACCACTGCACTACAGTCGCTAACAACA
CAACTTTATTACAATAATACAGTTGGAACATTCACTTTTGCCCTCTTAAA
GCTTTTTTCTATCAACAGATCTTTACAATAATACAGTTGGAACCAAAATT
TACTTTTGTGGTTTCAGATACACATTTCCAAGAGATGTCGGAAATTCCTA
ATAGTAACAATTTGGTCGATTTGCTCCTACAATGTGATGACAACAATACA
CCATGGAGAAAATTACTGGCTTATTCGCTGGCTGTTTTTAACCCACTCTT
AACTGTATTGGCCGCTTGTTATGAGGTAAGTTTTGTAAAAAAAATTGCCT
TACATATAAGTTATTTATTTACAGAATGATATTCTTATAAGAAAACGTGA
ATTTTTTCGAAAGTCTATGTTCACAAATTGTCGGAACTTTTTTATGTTAG
ACAATAGAAAGCGATAAATGTGAAAACTCTTTCATCTTTTCACTCTGGCG
AAAGTGGGCGATAGTGGGCGATAGAAAGCGACACAATATTTTCACCAAAA
GTTAAAAAATATTTTTTTCCTTCACTTTCTGTCGCTTTCCATCGGTTCCC
AGTGGGAATCAAGCTTTTACCGTATATAACAAAATACTAAATTTGCTAAT
TTTTACTTTGCAGGAAGCTGATTGTTGGGAGTGTCTTTGCGTTTGGTATG
TGTGTAGTGTGAATGAAGAAATGAGATTCAAGATATGCAGCAGTATACTT
GGTAAGATGTCTAGACAGTTGCACGGTTTTTTATAAGAACCTCCAAAATT
TCTTAGAAACGTTCTTAACTTTTTGAGTTTTAATTTTAAAGATGTTCTTA
GCATGTTCGTGCTTTCGCCATATTTTGAGTAGTTTTGTCCATTTTCCTCA
GAAATTGGATCTTTTAGAGTCCACAAAGCCTTAAGATGTTCTTAACTTGT
TCTTGATAATTTGGCCATCGAATCCCCATGTTCTTATATATATACTTTGT
TTTTATAAAAAAAGCGTGAATAATACGTAAAGATTAGGAACTCTGTGTTT
TTAAAGTTTTGTTCGGAGAACATTTACGACTAGAAGATCAGAATAATCGA
GGCAACCCTTAAGCTAAGGCTGCACTGATGAGTTTTTCAGGTGACTACAA
TGTAAATTTTGCAGGCCCTTATTTATTTTTCCGTAAAAGTTTTTTGCTGC
ATTTGCAAGAAGATTGCAGAAAAATTTGATGTGCTATAACACTGTTTAAT
TTCCTGAGTGAATGCAACGCAATGTAAATAACATTGCAGTCACCTGGAAA
ACGCATCAGTGAAGCCTTAGATATTTCGTTTATAGATATCAAAGATGAAG
ACGCAATTTTGAGTAAGTTAATTTTTTGACTCCCACCATAAATATAATTC
ATTCCTGGGTCGGAGGTAATCTCGGCAAAGGTTGGATATAAAATTGATAA
AAATGCGTTTTGCTACGGGAAAAATAAAAAAGATGACTCGGCAAAATAAT
AATCTTTACTCACGGTGGAATGAGCAGGGGGGTTGGGCACTTCAGATAAA
AATCAACAATATTGGGGGGGGGGAGGTGTTCATAATTAAGTGCTATTGAC
CTGATTTTGCTAAAAATCTCTAGGAAAGTGAAGGTTTTTGGCCAATTTTG
GCACTTTGTAGCGTAAAGGTCATAAAATTGGGGGTTATTATAAAGTGATA
TGGGGGTGATTTCTTTCCAAAAATTGAAAAAAATGACCCCACTACAATTA
AGCACACAGGAGTAATTGTCAAACACTGTTTCTAATTCTTCTTTTATTAA
GTTTTTTAAGGGGTTTTTTAGGGCCGGGTAACTCAGTCGGTAGAGCATTC
GCTTTACAATCCAAGGGTTCATTCCACCTCCCAGGTCAAACGCAACTAGA
AAAGGGGATAGACTCCCTCACTCATAACTTCGCCGACACCCACCAGATGA
ATATACTTTCTTACGGTTTCATTTTTTGGAGTTGCTTCATGTGGACAATG
TTTTATAAGCGGGTTTCAATTTTTTGATTTTATACGGGTGGACTGATGTG
GGCGGACTGATGTGGGCGGGCGATTGCGCTTGATTATTGGAGGCAAAAAG
ACTTACGATTTATATGGAGGTGAGTGAATGTCAATCAAATTTTTGAAAAC
TACAAGTCATATCTCTTCGAAATTCATGAAAGGTAAGCCTATATACCTCT
GAGAAAACATACTAAAATTTATTTTCAAAAAACCTACCAGAGACTTCATC
AAAACAAAAAATGTTTTTGTCTCCAGCTAATGTTATGGTCTTTCTGCCTC
CAAAAAATCGGGCGGTAAGTCACGTGAGTAAACAAATAACGTATCCCGAA
AGCCGTCTATAGATTTTGGAAGAAATGAAGTAATGCCAAACAGTTCATAG
AATAATGGGAAATGTGGTGTGGTNGCCGTCTATAGATTTTGGAAGAAATG
AAGTAATGCCAAACAGTTCATAGAATAATGGGAAATTAGCCGTGGCGTTT
CCTGCATTAGAGAATTGTAATGCTTTTAAAGTCACTTACTATCCTACTAT
ATTTTCTCTACTGCCAGTGCTTCGGAATCATCGCTGGTCAAATGAAGATC
TTTTGACAATTGTGAAATGTTTGTTGACTGAAGGTGTCAAATACGCAAAG
CTCATTTGTCATGGTTTTATCATTTTCAGAAAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040735XLOC_040735Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064964-exon-scaffold_427-1575043694:317610..317766TCONS_00064964-exon-scaffold_427-1575043694:317610..317766Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1575043694:316910..316979TCONS_00064964-exon-scaffold_427-1575043694:316910..316979Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1575043694:316314..316470TCONS_00064964-exon-scaffold_427-1575043694:316314..316470Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1575043694:316017..316234TCONS_00064964-exon-scaffold_427-1575043694:316017..316234Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1575043694:315304..315409TCONS_00064964-exon-scaffold_427-1575043694:315304..315409Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1575043694:314222..314381TCONS_00064964-exon-scaffold_427-1575043694:314222..314381Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1575043694:309422..309607TCONS_00064964-exon-scaffold_427-1575043694:309422..309607Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1575043694:308884..308997TCONS_00064964-exon-scaffold_427-1575043694:308884..308997Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1575043694:308678..308798TCONS_00064964-exon-scaffold_427-1575043694:308678..308798Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1575043694:306092..306249TCONS_00064964-exon-scaffold_427-1575043694:306092..306249Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1575043694:305666..305753TCONS_00064964-exon-scaffold_427-1575043694:305666..305753Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1575043694:305055..305081TCONS_00064964-exon-scaffold_427-1575043694:305055..305081Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1575043694:303731..303849TCONS_00064964-exon-scaffold_427-1575043694:303731..303849Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1510915933:317610..317766TCONS_00064964-exon-scaffold_427-1510915933:317610..317766Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1510915933:316910..316979TCONS_00064964-exon-scaffold_427-1510915933:316910..316979Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1510915933:316314..316470TCONS_00064964-exon-scaffold_427-1510915933:316314..316470Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1510915933:316017..316234TCONS_00064964-exon-scaffold_427-1510915933:316017..316234Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1510915933:315304..315409TCONS_00064964-exon-scaffold_427-1510915933:315304..315409Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1510915933:314222..314381TCONS_00064964-exon-scaffold_427-1510915933:314222..314381Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1510915933:309422..309607TCONS_00064964-exon-scaffold_427-1510915933:309422..309607Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1510915933:308884..308997TCONS_00064964-exon-scaffold_427-1510915933:308884..308997Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1510915933:308678..308798TCONS_00064964-exon-scaffold_427-1510915933:308678..308798Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1510915933:306092..306249TCONS_00064964-exon-scaffold_427-1510915933:306092..306249Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1510915933:305666..305753TCONS_00064964-exon-scaffold_427-1510915933:305666..305753Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1510915933:305055..305081TCONS_00064964-exon-scaffold_427-1510915933:305055..305081Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1510915933:303731..303849TCONS_00064964-exon-scaffold_427-1510915933:303731..303849Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1491911889:317610..317766TCONS_00064964-exon-scaffold_427-1491911889:317610..317766Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1491911889:316910..316979TCONS_00064964-exon-scaffold_427-1491911889:316910..316979Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1491911889:316314..316470TCONS_00064964-exon-scaffold_427-1491911889:316314..316470Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1491911889:316017..316234TCONS_00064964-exon-scaffold_427-1491911889:316017..316234Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1491911889:315304..315409TCONS_00064964-exon-scaffold_427-1491911889:315304..315409Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1491911889:314222..314381TCONS_00064964-exon-scaffold_427-1491911889:314222..314381Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1491911889:309422..309607TCONS_00064964-exon-scaffold_427-1491911889:309422..309607Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1491911889:308884..308997TCONS_00064964-exon-scaffold_427-1491911889:308884..308997Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1491911889:308678..308798TCONS_00064964-exon-scaffold_427-1491911889:308678..308798Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1491911889:306092..306249TCONS_00064964-exon-scaffold_427-1491911889:306092..306249Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1491911889:305666..305753TCONS_00064964-exon-scaffold_427-1491911889:305666..305753Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1491911889:305055..305081TCONS_00064964-exon-scaffold_427-1491911889:305055..305081Clytia hemisphaericaexon
TCONS_00064964-exon-scaffold_427-1491911889:303731..303849TCONS_00064964-exon-scaffold_427-1491911889:303731..303849Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:303731..317766 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.479574	0.846259	0.382049	0.182158	1.51269	0.655797	1.92752	2.50302	1.52523	2.64396	2.05295	0.564222	1.97085	0.927371	1.48414	2.45025	2.11747	1.16344	1.60946	1.9194	1.06352	1.34448	0.298453	2.71105	1.00457	2.18057	1.83117	0	2.2832	1.50955
Blast
[Close]
BLAST of TCONS_00064964 vs. Swiss-Prot (Human)
Match: SPTCS (Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 1.275e-30
Identity = 85/292 (29.11%), Postives = 150/292 (51.37%), Query Frame = 2 
Query:   41 IEKTLLQSALKAYPKVHDALYSYSN--DLENKDVTMYRLLQDNTQLEIRHWFGWQSNNSLAIEDENTLSELPHFSNPFLSERYAVDVKLSYDYYLQQARPMHAFLVYMKNRTHTSES----IDAVTSSVCRLAIENYDSAIISTSCILFMELIEGPYQLLKVDVKAAVLISKYW----NKRVSFEKKTNAQDVKTLLIDLLLAKKSRENLITLVSHLEDCIEVAIHENKEIDRFSFEAICHWKIAIQFCRLHQLPLTTCFVKSCCQTDNWLPLFLFIQLYQIPPTQILEVME 886
            ++  LL+ AL  YPK+  AL+       +   D+T+Y L+Q  +  +    FGWQS N+LAI D    S LPHFS+P L  +YA+  +L++ YYL   RP  AF  ++      S++    I  V +    + + ++    I  +C+ F+EL+      L+VD+K A +I  Y     + + SF +++ A+ +  L      A   +     L+  LE+    +I + +EI R S E+   W + +QFCRLH + L+  +++ C + ++WL   +  QL+   P ++  +++
Sbjct: 1111 VDPQLLKMALTPYPKLKTALFPQCTPPSVLPSDITIYHLIQSLSPFDPSRLFGWQSANTLAIGD--AWSHLPHFSSPDLVNKYAIVERLNFAYYLHNGRPSFAFGTFLVQELIKSKTPKQLIQQVGNEAYVIGLSSFHIPSIGAACVCFLELLGLDSLKLRVDMKVANIILSYKCRNEDAQYSFIRESVAEKLSKL------ADGEKTTTEELLVLLEEGTWNSIQQ-QEIKRLSSESSSQWALVVQFCRLHNMKLSISYLRECAKANDWLQFIIHSQLHNYHPAEVKSLIQ 1393
The following BLAST results are available for this feature:
BLAST of TCONS_00064964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPTCS1.275e-3029.11Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3[more]
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