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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064983 ID=TCONS_00064983|Name=TCONS_00064983|organism=Clytia hemisphaerica|type=transcript|length=1419bp
tgtcGAGGAAAAATCTGGCCGAggcatcaaaatcattttaataatGTTCA
GACAATGTCATTTAAAAGAATAGCGGTCTTTGAAAAGAATTAGACACAAT
TTTAGAATAAGATTTGAAAATgcatttaatttattttaagaaaaaaatct
agttttaagttttaagaatgatagaataaaaaggaaaaaaaagagtcAAA
AAGATTAAACAACTGAACTATATAAAAATATAcattatgaaaaatatatt
tttaaaaaatgtctttaCTTTTTTCCTTGCTTTGGTGGAACAAACGTAGC
AAGCTTTGTGTTGACTTTCAAAAACGAGTTGCCAAGTGGATCTGGTTTGA
TTCCTTGAAGGTCGAAAGCCAATTCCTTTCCTTTCTCAAAAAGGATAACA
TGTGAAGATCCACCAAAATGGAATGTACCAATATTCTCTCCTTTCTTGAT
ATAttgatttggctgaatttttaaaTCGACGGTTGATACATCGACCATAC
CGATGGGGACGAAGGCTACAAGACCAAGAGCAGTTTCAGTGTCAATGATG
ACCACACCACGAGTGGAGACGTGAGCAAGATAAGGCTGAGCTGCGATATA
ATTGGCAGAATTATCAGTGTAGTATGGTTGAGAGAAGTAAGTACCAGACA
CCAGTCTTGATACGATAACTTTACCAGATACTGGAGCATGGAATTGATGA
TAGGTGTGTGGGCTCAGGAAACCTTGGTAGATAGTTCCACCAATGAATTT
CTCCATTAATGGGTCGTTGTCCAAGATATATGCGACGGAATAGGGTTGAG
ACTTGATCCAGTAGGCATCATATTTCTGGACGACGTAGGTCACTCCATAT
GGTGCATTTTCACAAGCATTTACAACAACATTTGGGTCATCTTCACCACC
TACTGGTCTGGCACCTTTTTTCAAGTCTCgtgtgaaaaaatcatcaaatg
attTAAAGCCTTTATGTGGGGCGTTAGGATCACATACAAAGTCATCGTCA
AAATTAGGCATCTCTGATAGGGCGAGTGGTGTAAACCAACCATTTTCAAC
GTCAGCAAGTTTATCAACTGAATTTGATGTTAACAACCAGTTCTTTTGGT
AATCATTCAAGATATTCCTGAAGAGCTCGTTTACACGTCTTTTCAAGAAT
GCAGCATATCCAGCAGGAGTAACCATGGCGTATGTCAAAAGGGCACCAAC
TGGACATGGGATTTGAATGTCTGTAAAAGAGGATGAAATTGTGTAATGTA
ATTATCATTTAATAGGATTAAACTAAAGCCAGTACACGGTCTTTTATACC
CTTATCTTGTGATCCGGCGAGAGGAAAATTGTTGAGCTAATATGCATGGA
TTGAAAATGTCTTAAGGACATGATTTAAAGTTTTAaatctcctaccattt
gcttacacagaaTTATTAA Run BLAST on NCBI protein sequence of Phosphatidylserine decarboxylase probably from bacterial contaminant >TCONS_00064983-protein ID=TCONS_00064983-protein|Name=Phosphatidylserine decarboxylase probably from bacterial contaminant|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MVTPAGYAAFLKRRVNELFRNILNDYQKNWLLTSNSVDKLADVENGWFTP
LALSEMPNFDDDFVCDPNAPHKGFKSFDDFFTRDLKKGARPVGGEDDPNV
VVNACENAPYGVTYVVQKYDAYWIKSQPYSVAYILDNDPLMEKFIGGTIY
QGFLSPHTYHQFHAPVSGKVIVSRLVSGTYFSQPYYTDNSANYIAAQPYL
AHVSTRGVVIIDTETALGLVAFVPIGMVDVSTVDLKIQPNQYIKKGENIG
TFHFGGSSHVILFEKGKELAFDLQGIKPDPLGNSFLKVNTKLATFVPPKQ
GKK Run BLAST on NCBI transcript from alignment at scaffold_427:352543..353961 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064983 ID=TCONS_00064983|Name=TCONS_00064983|organism=Clytia hemisphaerica|type=transcript|length=1419bp|location=Sequence derived from alignment at scaffold_427:352543..353961 (Clytia hemisphaerica)
TTAATAAttctgtgtaagcaaatggtaggagattTAAAACTTTAAATCAT
GTCCTTAAGACATTTTCAATCCATGCATATTAGCTCAACAATTTTCCTCT
CGCCGGATCACAAGATAAGGGTATAAAAGACCGTGTACTGGCTTTAGTTT
AATCCTATTAAATGATAATTACATTACACAATTTCATCCTCTTTTACAGA
CATTCAAATCCCATGTCCAGTTGGTGCCCTTTTGACATACGCCATGGTTA
CTCCTGCTGGATATGCTGCATTCTTGAAAAGACGTGTAAACGAGCTCTTC
AGGAATATCTTGAATGATTACCAAAAGAACTGGTTGTTAACATCAAATTC
AGTTGATAAACTTGCTGACGTTGAAAATGGTTGGTTTACACCACTCGCCC
TATCAGAGATGCCTAATTTTGACGATGACTTTGTATGTGATCCTAACGCC
CCACATAAAGGCTTTAaatcatttgatgattttttcacacGAGACTTGAA
AAAAGGTGCCAGACCAGTAGGTGGTGAAGATGACCCAAATGTTGTTGTAA
ATGCTTGTGAAAATGCACCATATGGAGTGACCTACGTCGTCCAGAAATAT
GATGCCTACTGGATCAAGTCTCAACCCTATTCCGTCGCATATATCTTGGA
CAACGACCCATTAATGGAGAAATTCATTGGTGGAACTATCTACCAAGGTT
TCCTGAGCCCACACACCTATCATCAATTCCATGCTCCAGTATCTGGTAAA
GTTATCGTATCAAGACTGGTGTCTGGTACTTACTTCTCTCAACCATACTA
CACTGATAATTCTGCCAATTATATCGCAGCTCAGCCTTATCTTGCTCACG
TCTCCACTCGTGGTGTGGTCATCATTGACACTGAAACTGCTCTTGGTCTT
GTAGCCTTCGTCCCCATCGGTATGGTCGATGTATCAACCGTCGAtttaaa
aattcagccaaatcaaTATATCAAGAAAGGAGAGAATATTGGTACATTCC
ATTTTGGTGGATCTTCACATGTTATCCTTTTTGAGAAAGGAAAGGAATTG
GCTTTCGACCTTCAAGGAATCAAACCAGATCCACTTGGCAACTCGTTTTT
GAAAGTCAACACAAAGCTTGCTACGTTTGTTCCACCAAAGCAAGGAAAAA
AGtaaagacattttttaaaaatatatttttcataatgTATATTTTTATAT
AGTTCAGTTGTTTAATCTTTTTgactcttttttttcctttttattctatc
attcttaaaacttaaaactagatttttttcttaaaataaattaaatgcAT
TTTCAAATCTTATTCTAAAATTGTGTCTAATTCTTTTCAAAGACCGCTAT
TCTTTTAAATGACATTGTCTGAACattattaaaatgattttgatgccTCG
GCCAGATTTTTCCTCgaca Coding sequence (CDS) from alignment at scaffold_427:352543..353961 >TCONS_00064983 ID=TCONS_00064983|Name=TCONS_00064983|organism=Clytia hemisphaerica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_427:352543..353961 (Clytia hemisphaerica)
ATGGTTACTCCTGCTGGATATGCTGCATTCTTGAAAAGACGTGTAAACGA
GCTCTTCAGGAATATCTTGAATGATTACCAAAAGAACTGGTTGTTAACAT
CAAATTCAGTTGATAAACTTGCTGACGTTGAAAATGGTTGGTTTACACCA
CTCGCCCTATCAGAGATGCCTAATTTTGACGATGACTTTGTATGTGATCC
TAACGCCCCACATAAAGGCTTTAaatcatttgatgattttttcacacGAG
ACTTGAAAAAAGGTGCCAGACCAGTAGGTGGTGAAGATGACCCAAATGTT
GTTGTAAATGCTTGTGAAAATGCACCATATGGAGTGACCTACGTCGTCCA
GAAATATGATGCCTACTGGATCAAGTCTCAACCCTATTCCGTCGCATATA
TCTTGGACAACGACCCATTAATGGAGAAATTCATTGGTGGAACTATCTAC
CAAGGTTTCCTGAGCCCACACACCTATCATCAATTCCATGCTCCAGTATC
TGGTAAAGTTATCGTATCAAGACTGGTGTCTGGTACTTACTTCTCTCAAC
CATACTACACTGATAATTCTGCCAATTATATCGCAGCTCAGCCTTATCTT
GCTCACGTCTCCACTCGTGGTGTGGTCATCATTGACACTGAAACTGCTCT
TGGTCTTGTAGCCTTCGTCCCCATCGGTATGGTCGATGTATCAACCGTCG
AtttaaaaattcagccaaatcaaTATATCAAGAAAGGAGAGAATATTGGT
ACATTCCATTTTGGTGGATCTTCACATGTTATCCTTTTTGAGAAAGGAAA
GGAATTGGCTTTCGACCTTCAAGGAATCAAACCAGATCCACTTGGCAACT
CGTTTTTGAAAGTCAACACAAAGCTTGCTACGTTTGTTCCACCAAAGCAA
GGAAAAAAGtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064983-exon-scaffold_427-1491911889:352543..353961 | TCONS_00064983-exon-scaffold_427-1491911889:352543..353961 | Clytia hemisphaerica | exon |
| TCONS_00064983-exon-scaffold_427-1510915933:352543..353961 | TCONS_00064983-exon-scaffold_427-1510915933:352543..353961 | Clytia hemisphaerica | exon |
| TCONS_00064983-exon-scaffold_427-1575043694:352543..353961 | TCONS_00064983-exon-scaffold_427-1575043694:352543..353961 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_427 | supercontig | scaffold_427:352543..353961 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008654 | phospholipid biosynthetic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004609 | phosphatidylserine decarboxylase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008654 |
phospholipid biosynthetic process |
| molecular_function |
GO:0004609 |
phosphatidylserine decarboxylase activity |
Blast
The following BLAST results are available for this feature:
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