TCONS_00064975 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064975
Unique NameTCONS_00064975
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2167

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064975 ID=TCONS_00064975|Name=TCONS_00064975|organism=Clytia hemisphaerica|type=transcript|length=2167bp
CTATTGTTTGTTTCATATGAAAGGAACATTAAATGACGTCACAAAGTCGT
ATTAGACGAAGAGATATAAACACGGATTTTCTTTCTGAAACAACAGATTA
GTTGAGAAACAGTTATTTGACAAGACAGAGTGCGCGCGTGAGAAGTCAGT
CAAGACTTCGTATTACTGAAAGCAAGAAGAAAATTTGCTGCACTAAAGAA
ATTAGTATTAAGaTGACACGTTATTTGTCCGAAGTGTCCGGTTATTACGG
TTGTCAGTGGAAACCAAAAAACAACATGGCAGCACACAAAGAGAAATCAT
ACCACCAGATGACTGAAATCTTACAACAACGTGAAACAGATTGTCGCCGT
TTGCGTTTGAGTAGTTTATTCGAGACTATGCCGAAAAATGATATACATAT
CGAGGGTTACTCGCCGTCAGCCGTACGTAAATTACGCGCAAAGACAGTAC
CACCACTGCAGAACATTTACGAAGATACGATATTCTATCCTAGCAACTGG
ACTTCACCGTCACTCACTAAAAAACAACGCCGTGAGAGAATGAACAAAAG
GGCATCCAAAAAGCCAGTCATTGCAATAATTGAtgaaaacaataacaata
ataataatggaTTTATGAAAAAGAACACTGCGGCCGCATTGCGCATGAct
gaaaaattcgaaacaaaatacCATTCACCTCAGTTAAAACGTAAAGCGTT
TGGAAAACATAATTTGATTCCATTACCTGAGGAAAAGATCACTCGCTCCT
TTGATGAAAGCGTTATTGAGGAGACGGACGAGGAGGAAGAAGAAGCTCAG
CAACAGGTAATCGTTCGCCGTGGATCGGCCGGTGAACGACGTTTCAGACC
TAGATCATGGTCTGAgtgaaaaatgatcaaaatgagaCATCAATTTGGTG
CGAAGAGAATTTGGAGAAATATTTTGCTGTAAAGTGTTTTTCATAATGAA
CTTTGATCGGCTCAACTTACTAAGCAAACAGATAAGAGACAAAATCTGAA
GACGGTATGATTGACTTTCCTGTGAAATCAAGGAGTATTTTGCGATAAGC
TTTTCCGGATCACCGACATCGGAAAAACATGCAAATCAAGACTTAATCTC
TCCGTTATGTTACATTTTACCGGATATAAACANGCGATAAGCTTTTCCGG
ATCACCGACATCGGAAAAACATGCAAATCAAGACTTAATCTCTCCGTTAT
GTTACATTTTACCGGATATAAACAATCTTACGGAACTACTTATAAAATAT
CCGGGCACAACAGACTCGAAGTGGAGAAAATCGACATCAAACGAAGCTCA
ACTGTTGTTGTTTGGAGAATGTTGATTGATTTTGAGATTGGATGAGTAAT
CGAAATAAACAAACATAAACGGACGAGGAAAACCGTTtagaaagttttga
aaagaaaacagcagAACTTTATAAACATGTTCTTAGAATATCATCGTCTA
GGGATTTTTTATTCAAAGGACAAAAACATAAACGTTCCGAAATAAAAGCT
AGCGAAAGGAGATCAAAAATAGAGCGATTAAACAAAAACACATAGCAAAA
CGAAGGAATATAGATTTGATTGTGAATGCTAATGAAATTAAATCATATCA
GCGGAATCTCAGACAGGGATATTCCTTTTGctgttgtttttatataaaaa
ttaattttttagagCTGCATTTGCGCTATTACAATAGAACATCCTGCCCT
CAATCCTCTATTTAGATTTGTTGTGGTCGGTCCTCTTTTAGTCGTTTTCC
AGCAGGGATGGCTGACAACCCTCTCTCAAAAGTAAACAAATAACAACAAc
ttgtttgttttaaaaatagCGGGTGCAAAAGCTGAGCCtagcaaaacaac
aacaacaaattcaGGATACTTGTTTGAAAACAATCATCCACTTACACATC
TcaggagagtaaattttttcttttttttctcatagaAAATTATGCACAAA
TTATTGCCAACAATGTAGATTTgatttttagagaatttttctCTCCGTAG
TATATACACTAAATTGTAGAATATTGTTAataatttcgaaaaatcttttt
ttataaatattgtatatattaatttttgtatttattaTTATTGCAAAGAA
TGTAAATAGTTATGAGAAGTTTTAGGGATACAGAAAAAGATACCATACAA
CGCAAGACATGACAAAT
Run BLAST on NCBI

protein sequence of TCONS_00064975-protein

>TCONS_00064975-protein ID=TCONS_00064975-protein|Name=TCONS_00064975-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MTRYLSEVSGYYGCQWKPKNNMAAHKEKSYHQMTEILQQRETDCRRLRLS
SLFETMPKNDIHIEGYSPSAVRKLRAKTVPPLQNIYEDTIFYPSNWTSPS
LTKKQRRERMNKRASKKPVIAIIDENNNNNNNGFMKKNTAAALRMTEKFE
TKYHSPQLKRKAFGKHNLIPLPEEKITRSFDESVIEETDEEEEEAQQQVI
VRRGSAGERRFRPRSWSE
Run BLAST on NCBI

transcript from alignment at scaffold_427:496995..499701-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064975 ID=TCONS_00064975|Name=TCONS_00064975|organism=Clytia hemisphaerica|type=transcript|length=2707bp|location=Sequence derived from alignment at scaffold_427:496995..499701- (Clytia hemisphaerica)
CTATTGTTTGTTTCATATGAAAGGAACATTAAATGACGTCACAAAGTCGT
ATTAGACGAAGAGATATAAACACGGATTTTCTTTCTGAAACAACAGATTA
GTTGAGAAACAGTTATTTGACAAGACAGAGTGCGCGCGTGAGAAGTCAGT
CAAGACTTCGTATTACTGAAAGCAAGAAGAAAATTTGCTGCACTAAAGAA
ATTAGTATTAAGGTATGTAAATTTATTTTGGATGTAACTTTCCATGATTC
ATTTTTGTAATGTGTGATATTTTTTTTCAAGGAGAGTTTCCAGGGCGGCT
GCACTTTTTGTTTACGTACTTCTAGCAGTGTTTTGAATATACCACTCAAA
ACAAAAAAAAAAAAATTTCTTTTGGCTTCAAGAGATACTTGAGGAACGAG
AATCTTTGTATGTGAATTCCACATTAAACAGACAAGAGTAGTGTGAATGG
CATTAATTTTTCGGTAGATTTTAAAAGTTTAATTTTTGTTGAATGATCAT
ATGATGTACCCAATTTGAACCAATAAATCTTTTAAAAGGCATCATTCAAA
CGGGGTGAATAATATTTTTGTCCGGTATTTAAATTTTTCTGAATATACTA
TCTGAATGTGCAAATGATTTTGAATCCACTAAAGAAAATTTAAACAGGAA
TTCTCTGCAGGAATTGGGAGTTTAATCCGTCAAGGATCTGAAGATATTTG
AGAAACATAGAAAATTCACAATAAAAATTTCAAAATGTTTTCTTTTTTAC
AGATGACACGTTATTTGTCCGAAGTGTCCGGTTATTACGGTTGTCAGTGG
AAACCAAAAAACAACATGGCAGCACACAAAGAGAAATCATACCACCAGAT
GACTGAAATCTTACAACAACGTGAAACAGATTGTCGCCGTTTGCGTTTGA
GTAGTTTATTCGAGACTATGCCGAAAAATGATATACATATCGAGGGTTAC
TCGCCGTCAGCCGTACGTAAATTACGCGCAAAGACAGTACCACCACTGCA
GAACATTTACGAAGATACGATATTCTATCCTAGCAACTGGACTTCACCGT
CACTCACTAAAAAACAACGCCGTGAGAGAATGAACAAAAGGGCATCCAAA
AAGCCAGTCATTGCAATAATTGATGAAAACAATAACAATAATAATAATGG
ATTTATGAAAAAGAACACTGCGGCCGCATTGCGCATGACTGAAAAATTCG
AAACAAAATACCATTCACCTCAGTTAAAACGTAAAGCGTTTGGAAAACAT
AATTTGATTCCATTACCTGAGGAAAAGATCACTCGCTCCTTTGATGAAAG
CGTTATTGAGGAGACGGACGAGGAGGAAGAAGAAGCTCAGCAACAGGTAA
TCGTTCGCCGTGGATCGGCCGGTGAACGACGTTTCAGACCTAGATCATGG
TCTGAGTGAAAAATGATCAAAATGAGACATCAATTTGGTGCGAAGAGAAT
TTGGAGAAATATTTTGCTGTAAAGTGTTTTTCATAATGAACTTTGATCGG
CTCAACTTACTAAGCAAACAGATAAGAGACAAAATCTGAAGACGGTATGA
TTGACTTTCCTGTGAAATCAAGGAGTATTTTGCGATAAGCTTTTCCGGAT
CACCGACATCGGAAAAACATGCAAATCAAGACTTAATCTCTCCGTTATGT
TACATTTTACCGGATATAAACANGCGATAAGCTTTTCCGGATCACCGACA
TCGGAAAAACATGCAAATCAAGACTTAATCTCTCCGTTATGTTACATTTT
ACCGGATATAAACAATCTTACGGAACTACTTATAAAATATCCGGGCACAA
CAGACTCGAAGTGGAGAAAATCGACATCAAACGAAGCTCAACTGTTGTTG
TTTGGAGAATGTTGATTGATTTTGAGATTGGATGAGTAATCGAAATAAAC
AAACATAAACGGACGAGGAAAACCGTTTAGAAAGTTTTGAAAAGAAAACA
GCAGAACTTTATAAACATGTTCTTAGAATATCATCGTCTAGGGATTTTTT
ATTCAAAGGACAAAAACATAAACGTTCCGAAATAAAAGCTAGCGAAAGGA
GATCAAAAATAGAGCGATTAAACAAAAACACATAGCAAAACGAAGGAATA
TAGATTTGATTGTGAATGCTAATGAAATTAAATCATATCAGCGGAATCTC
AGACAGGGATATTCCTTTTGCTGTTGTTTTTATATAAAAATTAATTTTTT
AGAGCTGCATTTGCGCTATTACAATAGAACATCCTGCCCTCAATCCTCTA
TTTAGATTTGTTGTGGTCGGTCCTCTTTTAGTCGTTTTCCAGCAGGGATG
GCTGACAACCCTCTCTCAAAAGTAAACAAATAACAACAACTTGTTTGTTT
TAAAAATAGCGGGTGCAAAAGCTGAGCCTAGCAAAACAACAACAACAAAT
TCAGGATACTTGTTTGAAAACAATCATCCACTTACACATCTCAGGAGAGT
AAATTTTTTCTTTTTTTTCTCATAGAAAATTATGCACAAATTATTGCCAA
CAATGTAGATTTGATTTTTAGAGAATTTTTCTCTCCGTAGTATATACACT
AAATTGTAGAATATTGTTAATAATTTCGAAAAATCTTTTTTTATAAATAT
TGTATATATTAATTTTTGTATTTATTATTATTGCAAAGAATGTAAATAGT
TATGAGAAGTTTTAGGGATACAGAAAAAGATACCATACAACGCAAGACAT
GACAAAT

Coding sequence (CDS) from alignment at scaffold_427:496995..499701-

>TCONS_00064975 ID=TCONS_00064975|Name=TCONS_00064975|organism=Clytia hemisphaerica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_427:496995..499701- (Clytia hemisphaerica)
ATGACACGTTATTTGTCCGAAGTGTCCGGTTATTACGGTTGTCAGTGGAA
ACCAAAAAACAACATGGCAGCACACAAAGAGAAATCATACCACCAGATGA
CTGAAATCTTACAACAACGTGAAACAGATTGTCGCCGTTTGCGTTTGAGT
AGTTTATTCGAGACTATGCCGAAAAATGATATACATATCGAGGGTTACTC
GCCGTCAGCCGTACGTAAATTACGCGCAAAGACAGTACCACCACTGCAGA
ACATTTACGAAGATACGATATTCTATCCTAGCAACTGGACTTCACCGTCA
CTCACTAAAAAACAACGCCGTGAGAGAATGAACAAAAGGGCATCCAAAAA
GCCAGTCATTGCAATAATTGATGAAAACAATAACAATAATAATAATGGAT
TTATGAAAAAGAACACTGCGGCCGCATTGCGCATGACTGAAAAATTCGAA
ACAAAATACCATTCACCTCAGTTAAAACGTAAAGCGTTTGGAAAACATAA
TTTGATTCCATTACCTGAGGAAAAGATCACTCGCTCCTTTGATGAAAGCG
TTATTGAGGAGACGGACGAGGAGGAAGAAGAAGCTCAGCAACAGGTAATC
GTTCGCCGTGGATCGGCCGGTGAACGACGTTTCAGACCTAGATCATGGTC
TGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040737XLOC_040737Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064975-proteinTCONS_00064975-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064975-exon-scaffold_427-1575043694:499490..499701TCONS_00064975-exon-scaffold_427-1575043694:499490..499701Clytia hemisphaericaexon
TCONS_00064975-exon-scaffold_427-1575043694:496995..498949TCONS_00064975-exon-scaffold_427-1575043694:496995..498949Clytia hemisphaericaexon
TCONS_00064975-exon-scaffold_427-1510915933:499490..499701TCONS_00064975-exon-scaffold_427-1510915933:499490..499701Clytia hemisphaericaexon
TCONS_00064975-exon-scaffold_427-1510915933:496995..498949TCONS_00064975-exon-scaffold_427-1510915933:496995..498949Clytia hemisphaericaexon
TCONS_00064975-exon-scaffold_427-1491911889:499490..499701TCONS_00064975-exon-scaffold_427-1491911889:499490..499701Clytia hemisphaericaexon
TCONS_00064975-exon-scaffold_427-1491911889:496995..498949TCONS_00064975-exon-scaffold_427-1491911889:496995..498949Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:496995..499701 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.543581	0.600754	0.164126	0.321142	42.8345	32.7092	35.2458	39.5175	19.7274	48.3604	21.4047	41.8136	68.8211	52.9622	50.1372	52.5241	31.2441	33.028	103.202	76.6113	17.8342	17.9959	16.2463	13.9203	35.3673	18.6123	87.2566	83.7891	71.9575	63.3142
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064975 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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