TCONS_00064990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064990
Unique NameTCONS_00064990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064990 ID=TCONS_00064990|Name=TCONS_00064990|organism=Clytia hemisphaerica|type=transcript|length=454bp
CTCAAGTCTTTAAGACTCCAACCCAAGGAGACGTCTATGGGAAGTGGGCA
ATCCAGCTCCCAACTTTTGATCGATACTGTCGCCCCTCTCTCCGCCATAG
GATCTcGAAAGAGGCGGACAGCTGCAGTCATGCTCGAGAACAATTCGTGG
AAGAAATCGCGAAAGTAATTGGACTTCGCTCTATACTTTGTATATAACTT
ATCGTATATtgacaatttcaatattttatccaTAAAGCAAGCAATTTGTT
TGAGTCTCTTTTATACCTAAAAAACTCCAAAACCGGGGTATCATTTGCAT
TCACTAATATCTGGGGATTTCTTTTCGATTCACCCTtcattatctttcca
acaagcaCAGAACCGCAATCTGATCAATCtaaattctaaaatcaaaaatt
cgaATAAACGATGGGGtgttagaaaattttcaaaatttaataaacggggg
aggg
Run BLAST on NCBI

transcript from alignment at scaffold_428:47379..49400+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064990 ID=TCONS_00064990|Name=TCONS_00064990|organism=Clytia hemisphaerica|type=transcript|length=2022bp|location=Sequence derived from alignment at scaffold_428:47379..49400+ (Clytia hemisphaerica)
CTCAAGTCTTTAAGACTCCAACCCAAGGTAATTCTGGTCCCTGCAATATC ATAGAATAATTTAgcgatggaaaaacagcttctcgAAAAACAATGAGAAT ACGGCTCGTCACATGTCAGGTTCTTTacccttaagggagtttgttttggt taatgaatttcttttgtttttgattaaaaaatctgcataattagcgtgat GTGACGAAATTATTTTGTACTGATTATGcctttactctcgggtacctaat aaggaCCTTAAGCAACTAGGACGGCGACTTGAGGGAGAACGtggagaaaa tattaaaatctaatggtaaattttattcgATTTTACTATGGTTTAATAGC ACGTGAATGGACTTTAACAAAAGCAAACTTtggtgaaaaataatttttta tcccCCGAGTGATTTAAATGATTAATTACTATTGTACTCTTTTATTACCG CCTTCGTCTTAGAGAGCACGTCGAAACATGTTTTTGAAGTCGCCTTGTAA TTTTGAAACGTCCAGTAACTGCCCAATTAAATCTAAGTATTTTCATGAGA AAAGTATATGAAAAGAATGAAATCTTTTTGTGATTCAAATGTTGATCCCA AAAGGGATTTGTTATTGTTGGATGCTACAGTTCTCACTACAACCGCCGTC CTAGTTGCTTAGGGtccctaatagccggggggggcgctaattaatttttc aaaaaatttccaccaggacattcttattccaaccccctatccgcttattg attttttgaaaaaaaatttggaaagttGTTAGCcttcttttcgaaaattt tctacccaggacatttttattccaaccaaCGAGAAATTGTTTAACAATCA TCACggtaaaacaaaacaaaacaaaaaataaataaataaaaatttaaccG AATTTCAAAATCCATATTATATTCAACGTGAATTCTACCTTTCAGGAGAC GTCTATGGGAAGTGGGCAATCCAGCTCCCAACTTTTGATCGATACTGTCG CCCCTCTCTCCGCCATAGGATCTGTAAGTGTGTTATAACCGTTCAGTTAA AAAAGAAATGAGTGTATACCTTATcgaccaaaacttagtcggccttcatt ttagtcggccttaattattagtcggccctaattttagtcNGAAATGAGTG TATACCTTATcgaccaaaacttagtcggccttaattttagtcgtagtcgg cccaaattttagtcggccctaattttagtcaccaagtcaaaatttagtca cttagggccgactaggGTAGTCATAATTTCCCGGACTTCATGCGTTCCTT GTGAAGTGTCTGCTGCTTTCCCTTGGAGAAATAGCGGGGTCCCCGAGATT CATTTTACTGACCCAATCCCGAGGAGGtggtatattttcaaaatattttg atcaagTTTCATAGGCCTTGAGAGTTGAATAAATGGAAAAAGTTTGTTCA TTTTCATTGGTTGCTGAAATGAAATTTACTAACTCCTTTGCATTGATTTT CTCTAGAAAAAGTCATTTGACCTCCCACTTTACGCCCTCTCACCTCCCAC TGAACGCCCTCTCTCCCTTTTTTCTAATCTTCTATTGATATTGtgatttt cagataattttcttTGGTGTCACTATCTTTCGTAAGCTTTGATAATTCAT GAgacatttttttgtctttttagcGAAAGAGGCGGACAGCTGCAGTCATG CTCGAGAACAATTCGTGGAAGAAATCGCGAAAGTAATTGGACTTCGCTCT ATACTTTGTATATAACTTATCGTATATtgacaatttcaatattttatcca TAAAGCAAGCAATTTGTTTGAGTCTCTTTTATACCTAAAAAACTCCAAAA CCGGGGTATCATTTGCATTCACTAATATCTGGGGATTTCTTTTCGATTCA CCCTtcattatctttccaacaagcaCAGAACCGCAATCTGATCAATCtaa attctaaaatcaaaaattcgaATAAACGATGGGGtgttagaaaattttca aaatttaataaacgggggaggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040751XLOC_040751Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064990-exon-scaffold_428-1491911889:47379..47405TCONS_00064990-exon-scaffold_428-1491911889:47379..47405Clytia hemisphaericaexon
TCONS_00064990-exon-scaffold_428-1510915933:47379..47405TCONS_00064990-exon-scaffold_428-1510915933:47379..47405Clytia hemisphaericaexon
TCONS_00064990-exon-scaffold_428-1575043694:47379..47405TCONS_00064990-exon-scaffold_428-1575043694:47379..47405Clytia hemisphaericaexon
TCONS_00064990-exon-scaffold_428-1491911889:48324..48401TCONS_00064990-exon-scaffold_428-1491911889:48324..48401Clytia hemisphaericaexon
TCONS_00064990-exon-scaffold_428-1510915933:48324..48401TCONS_00064990-exon-scaffold_428-1510915933:48324..48401Clytia hemisphaericaexon
TCONS_00064990-exon-scaffold_428-1575043694:48324..48401TCONS_00064990-exon-scaffold_428-1575043694:48324..48401Clytia hemisphaericaexon
TCONS_00064990-exon-scaffold_428-1491911889:49052..49400TCONS_00064990-exon-scaffold_428-1491911889:49052..49400Clytia hemisphaericaexon
TCONS_00064990-exon-scaffold_428-1510915933:49052..49400TCONS_00064990-exon-scaffold_428-1510915933:49052..49400Clytia hemisphaericaexon
TCONS_00064990-exon-scaffold_428-1575043694:49052..49400TCONS_00064990-exon-scaffold_428-1575043694:49052..49400Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:47379..49400 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (6.84837 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.25193 3.82703 6.84837 6.08578 0 0 0 0 0 0 0 2.1502 2.00167 0 2.26602 1.40594 1.37739 0.191501 1.97831 1.396 1.56735 1.37871 3.17228 2.36679 0 0.1421 0.948498 0.778947 1.93552 1.91354
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450Sequence
Match NameE-valueIdentityDescription
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