TCONS_00065000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065000
Unique NameTCONS_00065000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065000 ID=TCONS_00065000|Name=TCONS_00065000|organism=Clytia hemisphaerica|type=transcript|length=717bp
aaaaaaacggtCGGGACTTTTTTTGCAGTATCATAAATACGACACACACG
GGTGCTATTGGCTGCAGAAAAGACTCAAATTTGCATTTCACCGATACACA
CTCTGACCAACTCTTGCTTGATCCATTTCCGAGTTCGAACTTCATAAATA
ATGGCTGCTGAAACCAAAGTTGAATATACCAAGCTTTTCATCAACAACGA
GTGGTGCGATTCGGCTAGTGGCAAAACATTTCCAACAATCAACCCTGCAA
ATAACCAAGAAATTTGTCAACTTCAGGAAGCCGATAAGGTTGACGTTGAT
CTAGCTGTGAAAGCTGCAAGAGATGCTTTTGAATTTGGATCAGAATGGCG
CTCTATGGCAGCAGCTCAAAGAAGCGCTCTTATGGGCAAATTAGTGGAGC
TAGTGCAAAGAGACTCTGACAAATTAGCTaggCTGATCACATTGGACATG
GGTAAAACATTAAAAGCGGCGCAATTTGAAGCCATGTTTTCCGCAGCCAC
TCTCGCTTATTATGCTGGGTGGCCCGATAAAGTGACCGGAAAAACTCTCC
AACCTGGTGCATCCGAGGACGCGTTTTTCGCGTACACACGACATGAACCT
ATCGGTGTTTGCGGTGCCATTATCCCTTGGAATTACCCGTTAGCAATGAT
CGCATGGAAGATCGGACCAGCATTAGCCTGTGGGTGCACCATGGTCATGA
AGGCTGCAGAACAATCN
Run BLAST on NCBI

transcript from alignment at scaffold_428:182681..189460+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065000 ID=TCONS_00065000|Name=TCONS_00065000|organism=Clytia hemisphaerica|type=transcript|length=6780bp|location=Sequence derived from alignment at scaffold_428:182681..189460+ (Clytia hemisphaerica)
aaaaaaacggtCGGGACTTTTTTTGCAGTATCATAAATACGACACACACG
GGTGCTATTGGCTGCAGAAAAGACTCAAATTTGCATTTCACCGATACACA
CTCTGACCAACTCTTGCTTGGTAAGTCCTTATTATCACGGTTATCTGGCA
TCCAAATGCGGAacttttcatccgacacgctaaagctctgaaggttggaa
caattttcaacatctggtcCGGGAAGGTCTAGATTACGGAATTGTGCAAa
accgcgtcaaggattttgcagccgGAGGCCTGTACCcaagccctcgtttt
cggggatcgGTGGGTCCGGTTCAGATATTATCAGGTTTATGCGCAAGGGT
AAatgaacccgactggggatgcggcacatcaaaggctgactatcattcct
ctctgTTTGTTGGGAAATTGACCCTCTCCTTTAAAGCTTTagtgtgggcg
gccgccaatccgccatcggaatttCAGATAGATAGAATGGATAGTTTAGT
CAATTTGTGTGATGAAAGTAGGCTCAACCAATAAGACTTCCATATCGCTT
TGCACCTGTCGCTGAAAATTAGTTATTTTGATTTCTATGTAATTATTTCG
TGAAAGCTTTTCAACGGATATTCATAACTGCCAATAATGCTCGTTTTGCG
CGTAAGGTTTTACAGCCTAGATTATATTGTTCCTTTTTCGTTTATAGAAA
CAGAATAAGGTAAACCGCAATTAAGACTAAGCAAACATACATCTCATAGA
TTTTCAGTTATGGCCTCTACAGCCCTCGGGAAAATGTCTGCCTTGCTCTT
GTTCAAAGCCAGCAAGCTCCATCAGTCTTCCGAAGCCTTCATGGTCTTAA
TTATGTGTATGTAATCATGTAACAATCCCCTTTCTAaagttttcctttta
ttttagaTGATAATTAAGGAATTGAATTTACATCACAAATTTGAAGAAAC
CTGAAAAAGTTTTGTGGAGTTTATGAAGTAACatgtcatttttcttttct
taagtACTTGCTCAGTTAAAGTTAATAGTGTTTTCTAGAAGAAAGAATCA
TAGTTTGTTCAGGGTTCAAGAAGCCAGCCATTTTGTATATTACAGTGTCG
AAATAAGTAAACAACACAATTGTGCATCGTATTACTGTTGCATTTTGATA
ATACAttacattacacgttttttataagaacaaactatataagaatataa
ggcttcgattgccaaaatgttaagaataagttaagaacattttacggTTT
TGCAGACTCAAagacacccgatttcttaggaaaatctacaaaaaatactc
aaaaaatgccgaaaataagaacatgttaataacaattttaggcttaaaac
tcaaaaagttcgaaggcttcaaaaattttggatgttcttatttaaaaaaa
cgtgtatttactTATATTCTCTGATTTCGCTCTCTACAAAAAATCGACAT
CTTTCGATGTGTTGTACCCTCTGTGTTGCTGACTGGCATTTGCGTTTTCT
CTTTTAGATCCATTTCCGAGTTCGAACNACTGGTATTTGCGTTTTCTCTT
TTAGATCCATTTCCGAGTTCGAACTTCATAAATAATGGCTGCTGAAACCA
AAGTTGAATATACCAAGGTAATATATTGATCATATCACCTTAAAAGGTTG
GTTTGAGATTTTGTTTTGCCTATAGATTCTTTCCATTTTAGCGAGCAAAG
CTCCAAATATTTTTACCTTACTCTTTTTGAAAGTCGAGATATTTAATTTA
TAAGTTTTCGACTTTCagtaagaaaacaatagaattttgatgtaagaacc
catttttaGAAAGGAGTTTTGCAGTTTTTTAATTAACATGCAAAAGATCT
TAAACCATCTGATTACCCCTTAAAGGGTACCAGCATCTGAATAAAGCAAG
GATCTTATAATTGATCAGGGAACCCCAAAATTCGTTATTTGTGTTGGCTA
CCCTATCATTGATACACATTTTTTGGTCTTTGTGAAAAAtcggatcatta
attttttctgatttttttgcatgaaagtagggtaccatcataggtaaaag
atggctcaagcagattttcgcaaaaaaattttgttgactcaaaaaacgca
tgtttagctataagaatcactattaacaagcatacatcaatgttcttagt
ccaattactcaattttttatgagatagatgttttttttttgctcatgaga
gcttacttttgaagaatatgtgtgtttagacaggaaattttggttgcttg
gcgtgtttttatagaaaaactggccaaatttgatattNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNcaaatttgatatttttttataagc
acattattaattacttaggtattagcttttctcgagattggctctttcat
tgtttatgattttttgcacaaagatgcataactataaaccctcgaatgtg
acggagcctgatttttggaaaaaaatgttttttggcaaatttgggccaaa
aaacggctaaaaaacgggttttctggGACTTTgcgaaaaattggatcatt
atttttttctaatcttttgcatgaaagtagggtaccatcataggtaaaag
attaCTCAAGcatgattttgcaaaaaaaaaattgttgactcaaaaacgca
tgtttatctataagaatcactattaacaagcatatatcaatgttcttagt
caaattactcaattttttttatgagatagatgtttttttctcatgagggc
ttacttctgaagaatatgtgtgtttagacgtgaaattttggttgcttggc
gtgtttttatagaaaaactggccaaattcgatatatttttataagcacat
tattatcaattacttaggtattagcttttctcgagattggctctttcatt
gtttatgattttttgcacaaagatgcataactaccgggtgacccacgaaa
aagttcagacgtttctcgacgtcttgaggccgaacaaatgtaccaaagtg
cttggagtttagatatttagaaagcNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNgtttttgaaaaaaatctgaaaaatctacaaaagcgccaaa
ttttataaaaactagtctttttttaaacaaaaattacttttaaaggtgta
tttattaattattaatgtcataaaactcgttaaataagtcaatttgtaag
tgattttctaattaattgcataaatttaatacctgttttttacgtgtttt
ttacactttccgaaaagtgaattttgactttaaaagctcataagtagaga
acaagttggtcaaatttaaaaagtgataGCTCAAATTTTAAGTTAGGATA
TCTACTTTCgaaatatcaaaactccaagcactttgggacatttgttcggc
ctcaagatgtagggaaacgtctgaactttttcgtgggtcacccggtatat
aaacccttgaatgtgacggagctcgatttttggaaaaaaaaacggccaaa
aaaagagttttttggactttgtgaaatattggatcattgattttttgcat
gaagtaggtaaaagatggctcgagcagatttttgtaaaaaataatttttc
agctcaaaaaacgcatgtttatctataagaatcactattaataagcatac
attaatgttcttagccaaattactaatTTTTTTGACGAGATGGATGGTTT
TTTCCTCACGAAGtattgaatatgaaagaatatttcaagagcatgaaatt
ttggtttctaaatgtttttttcataagaaacaaacgactaattttaatag
atcgtcaatatttgtgttctgaatgattgtttaatggtcacgtcacgtat
atatcaattataaatatgttaaatgcacaaataggtaggtccataaaagt
atcacttgttacacttttttctactgtctttaggtgcgaaaaaaaaaact
gagatgttttagggtggtaaaacggacaagaAAATACCTATCGTAGCAAT
AAGGAGGCTTGGATAACCACTGTGGCGTAGATGAAGTATCCTTGTAATAT
TTATTCTCTTTTCGAAGCTTTTCATCAACAACGAGTGGTGCGATTCGGCT
AGTGGCAAAACATTTCCAACAATCAACCCTGCAAATAACCAAGAAATTTG
TCAACTTCAGGAAGCCGATAAGGTATGTGTTCTCTAATTGATTATCAATC
TGTACACTAAGAATGTTTTCAATGCCATTCGTCATTTTGAAGGAAGGTTT
GAATATATTACGTTAAGGTTCTTTGAGTTACAATAAtaatagactggagt
cgtttataatgcatgtaaatACAGTTATAGTCGTTTTATGATTATACGAT
TATTTTTACgaaatttagtttgtataaactaaagaTTGTTTCCACCATTA
CCTTTTGCTTTTTTTAGGTTGACGTTGATCTAGCTGTGAAAGCTGCAAGA
GATGCTTTTGAATTTGGATCAGAATGGCGCTCTATGGCAGCAGCTCAAAG
AAGCGCTCTTATGGGCAAATTAGTGGAGCTAGTGCAAAGAGACTCTGACA
AATTAGCTGTAAGGGCATATCGTAAATTACTTGCGACCATTATTCAATCA
TTCAATCATcagggaaaaatgaaaataatagccgcattctttttcaccgt
ccaacacATTCGATCACTGTATTAATTGCGAAATTAAGAAATGATTCTTT
GTCACGCTtgacttatttaaaaaaaagggcGACATGAGTTGCGTTGCCAT
ATCCAGACCTACCGGACCTTTAAAATCCTTGAATAATGCAAGTGGTTCAT
AGATGATAAAAGATGGCTGCACTTTGGGGCATGTCAAATCATCCTacatt
ttattttcttagtCTTGCATCCTGGACGAAGTATCCTCCACCACCTAACg
aattgatttctttttttcagaggCTGATCACATTGGACATGGGTAAAACA
TTAAAAGCGGCGCAATTTGAAGCCATGTTTTCCGCAGCCACTCTCGCTTA
TTATGCTGGGTGGCCCGATAAAGTGACCGGAAAAACTCTCCAACCTGGTG
CATCCGGTATGTATTCATGATATACGTCGATAAATTTACTTCTTTTTAAC
AGAATAAAGTAGATTTCGAATTCAAGTCAAGGAATATTGTTTCCACTCTC
ATTTTATTTGTGAAATACCGGGAGAAATTTCCTCATCGACAAATAATtct
aagtaagtctgcgaccgcagtcggagacTACTCGAAGGcccctctttcga
tagctgtctacccgaaggtaaggggagggcgccactctttctccctggat
tgctccagtttacccttgatccttaacttaattgctgagcatcaagcaga
gaggcatcaagtaccattttgggaatcttttgTATGACCTGACTGGGGTt
tgaaccattgagtttaaagcccgaagggctagagttcaatctctaacctt
tctcaggcaagaaaaagtgaagccttaaaaaatgcgccgtgttttgacga
cagattgattgattcctttgtttacaattgatatttttttcgaaatttag
tggtaaattttagtttcaatctgtcatttgtgtaaaaaccaggcgagccg
ctcaaggccgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNcaggcgagccgctcaaggccgcgcaactttggtagga
tttgttggcttcaaatcctaccaaggagattgacttctagcccttcgggc
ttatacttcattggtttgAACCCACAACTTTGTGCACCGTAGCCGGaagc
tctaccactgcactacggtcgcgtTTACAGTCGCACATTTTAAATAACAG
GGTAATTACGCTTTTGATAAACTAATTTCTTTGGCCTTTAAAGTATCATT
CTCATTATAATACGTTTCTTTATTCTTACAGAGGACGCGTTTTTCGCGTA
CACACGACATGAACCTATCGGTGTTTGCGGTGCCATTATCCCTGTAAGTT
TTTTAtctaaaggttttatttttacataagtgtttccgtttcatatcagg
acagtgtcttgctattgttatattatgctgatataaacaaacaaaaaatg
gttttctcttcttctttctaatcatcttgctccacattcgtgtcaattca
atgtgaaaaagcttgtgaattaaaattgattagtaagcaaacgatatcac
tcttatttaaaaacaaaacttttaaattattcGTGGTGAAATGATGTTCC
CAAAACCTTTTCCAATTTTCCCTTAAAGGTTAACCAATTCCAGCCACAAA
AGGAACATTTCTACTGCTTCAAACCTTGTAGCTATCGTTACCATATGACA
CTGTTATTAGTTATTTTATAATAATTATTCCCGTTATTAGTGGAATTACC
CGTTAGCAATGATCGCATGGAAGATCGGACCAGCATTAGCCTGTGGGTGC
ACCATGGTCATGAAGGCTGCAGAACAATCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040754XLOC_040754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065000-exon-scaffold_428-1491911889:182681..182800TCONS_00065000-exon-scaffold_428-1491911889:182681..182800Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1510915933:182681..182800TCONS_00065000-exon-scaffold_428-1510915933:182681..182800Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1575043694:182681..182800TCONS_00065000-exon-scaffold_428-1575043694:182681..182800Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1491911889:184235..184297TCONS_00065000-exon-scaffold_428-1491911889:184235..184297Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1510915933:184235..184297TCONS_00065000-exon-scaffold_428-1510915933:184235..184297Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1575043694:184235..184297TCONS_00065000-exon-scaffold_428-1575043694:184235..184297Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1491911889:186998..187102TCONS_00065000-exon-scaffold_428-1491911889:186998..187102Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1510915933:186998..187102TCONS_00065000-exon-scaffold_428-1510915933:186998..187102Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1575043694:186998..187102TCONS_00065000-exon-scaffold_428-1575043694:186998..187102Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1491911889:187348..187488TCONS_00065000-exon-scaffold_428-1491911889:187348..187488Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1510915933:187348..187488TCONS_00065000-exon-scaffold_428-1510915933:187348..187488Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1575043694:187348..187488TCONS_00065000-exon-scaffold_428-1575043694:187348..187488Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1491911889:187851..187986TCONS_00065000-exon-scaffold_428-1491911889:187851..187986Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1510915933:187851..187986TCONS_00065000-exon-scaffold_428-1510915933:187851..187986Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1575043694:187851..187986TCONS_00065000-exon-scaffold_428-1575043694:187851..187986Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1491911889:188912..188973TCONS_00065000-exon-scaffold_428-1491911889:188912..188973Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1510915933:188912..188973TCONS_00065000-exon-scaffold_428-1510915933:188912..188973Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1575043694:188912..188973TCONS_00065000-exon-scaffold_428-1575043694:188912..188973Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1491911889:189371..189460TCONS_00065000-exon-scaffold_428-1491911889:189371..189460Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1510915933:189371..189460TCONS_00065000-exon-scaffold_428-1510915933:189371..189460Clytia hemisphaericaexon
TCONS_00065000-exon-scaffold_428-1575043694:189371..189460TCONS_00065000-exon-scaffold_428-1575043694:189371..189460Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:182681..189460 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03774	2.29871	2.56271	1.34529	1.60107	0.81865	12.71	0.0745158	15.612	5.7763	11.0739	5.11213	82.7189	78.4193	72.9267	93.4623	73.5303	84.7633	33.2555	8.26604	6.70162	6.64781	43.0032	47.2992	29.168	21.1169	38.5832	39.0505	454.482	284.179
Blast
[Close]
BLAST of TCONS_00065000 vs. Swiss-Prot (Human)
Match: AL1A1 (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 4.902e-67
Identity = 101/191 (52.88%), Postives = 134/191 (70.16%), Query Frame = 1 
Query:  148 IMAAETKVEYTKLFINNEWCDSASGKTFPTINPANNQEICQLQEADKVDVDLAVKAARDAFEFGSEWRSMAAAQRSALMGKLVELVQRDSDKLARLITLDMGKTLKAAQFEAMFSA-ATLAYYAGWPDKVTGKTLQPGASEDAFFAYTRHEPIGVCGAIIPWNYPLAMIAWKIGPALACGCTMVMKAAEQS 717
            ++  + K++YTK+FINNEW DS SGK FP  NPA  +E+CQ++E DK DVD AVKAAR AF+ GS WR+M A++R  L+ KL +L++RD   LA + +++ GK    A    +     TL Y AGW DK+ G+T+     +  FF YTRHEPIGVCG IIPWN+PL M+ WKIGPAL+CG T+V+K AEQ+
Sbjct:   11 VLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTI---PIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQT 198
The following BLAST results are available for this feature:
BLAST of TCONS_00065000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AL1A14.902e-6752.88Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
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