|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065004 ID=TCONS_00065004|Name=TCONS_00065004|organism=Clytia hemisphaerica|type=transcript|length=677bp
CGAATTTTTTTGGAACGAACAAGGCCAATTTTGGCTCCATGAAGGTATTA
GACGTTTCCATAATGTCCAGATCTTCAAAGGACGCCAAAGGAAGATGGAT
TCGTTCTGGAATCAAAGCCCTGGTTTGTTCGCCAGTAATGTCCATTTTGA
GAATCTACCAGAACATTTCAAAGTTCAGAAAGAATacttctttcaaacca
ttccaACTCAACGACCTTACAAACTATTCTTCGCTATCATGTTACTAAAA
TCAGACGACTCTCTTATTACTGTAAAAGATACCAATGTTTTCAGCTTGGT
TGCATCTCAAATCAATACCAACGGGAGTAAGAGGTCCATCATAACGGATC
AAGTAACCTTGGTGGCCGGTCAACCGAAACTACGGATCTGCACCGCTGGA
TCTTCAGATGGGCGTGAACAAATTTGCTTCACAACTGGGCCACTCCCTCA
tggaaaatttatcaatttcagAGTCAAGAAAGATTACACCTCCTCTGGCT
CAAAAGATACAGCGACGTATTCGTACACTCTTAGAATGTCAGAAGATGTT
CTAAACCCTGGCGAACCCATTTTCAGCACCATGGTAAGGCACCAGTATGA
CGACGTTGATGTGATCTTCGGCCACAGATTGGAGCCAGCAAACGTGTACG
TCCGAAATTTTTATCCAATCATTATGC Run BLAST on NCBI protein sequence of TCONS_00065004-protein >TCONS_00065004-protein ID=TCONS_00065004-protein|Name=TCONS_00065004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
EFFWNEQGQFWLHEGIRRFHNVQIFKGRQRKMDSFWNQSPGLFASNVHFE
NLPEHFKVQKEYFFQTIPTQRPYKLFFAIMLLKSDDSLITVKDTNVFSLV
ASQINTNGSKRSIITDQVTLVAGQPKLRICTAGSSDGREQICFTTGPLPH
GKFINFRVKKDYTSSGSKDTATYSYTLRMSEDVLNPGEPIFSTMVRHQYD
DVDVIFGHRLEPANVYVRNFYPIIM Run BLAST on NCBI transcript from alignment at scaffold_428:198846..199918+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065004 ID=TCONS_00065004|Name=TCONS_00065004|organism=Clytia hemisphaerica|type=transcript|length=1073bp|location=Sequence derived from alignment at scaffold_428:198846..199918+ (Clytia hemisphaerica)
CGAATTTTTTTGGAACGAACAAGGCCAATTTTGGCTCCATGAAGGTATTA
GACGTTTCCATAATGTCCAGATCTTCAAAGGACGCCAAAGGAAGATGGAT
TCGTTCTGGAATCAAAGCCCTGGTTTGTTCGCCAGTAATGTCCATTTTGA
GAATCTACCAGAACGTAAGAATAACACaacatttcttttaaaaactgaTA
TCAAAGGCTCTAGATAGTTTTACAACCATATAATCTCATTCATTTTCCGA
GCCTGACCAAGAGACgtgcatttttttcaaagtaacaTGGTATGAATATG
TAAAGATCATCCATATTTTATCAGAAATTTGCCTGTCTGTAgactgctgg
catccactaacagaTTAGTGCTCCTTATAGATATATCATACTTCCTGCAG
CAGAAAATCTTATTATATTTGACGACTCGTGACTCAATATCAGCCAAACC
CCGCAAAACTTTTTTATCCAATTAATAGTTCATATATCTGGAACGTATTC
TCTATAAAAATCCCCTTGAATGGACATATACTGGACATGAATTCAAACTT
TTCTTTATAGATTTCAAAGTTCAGAAAGAATacttctttcaaaccattcc
aACTCAACGACCTTACAAACTATTCTTCGCTATCATGTTACTAAAATCAG
ACGACTCTCTTATTACTGTAAAAGATACCAATGTTTTCAGCTTGGTTGCA
TCTCAAATCAATACCAACGGGAGTAAGAGGTCCATCATAACGGATCAAGT
AACCTTGGTGGCCGGTCAACCGAAACTACGGATCTGCACCGCTGGATCTT
CAGATGGGCGTGAACAAATTTGCTTCACAACTGGGCCACTCCCTCAtgga
aaatttatcaatttcagAGTCAAGAAAGATTACACCTCCTCTGGCTCAAA
AGATACAGCGACGTATTCGTACACTCTTAGAATGTCAGAAGATGTTCTAA
ACCCTGGCGAACCCATTTTCAGCACCATGGTAAGGCACCAGTATGACGAC
GTTGATGTGATCTTCGGCCACAGATTGGAGCCAGCAAACGTGTACGTCCG
AAATTTTTATCCAATCATTATGC Coding sequence (CDS) from alignment at scaffold_428:198846..199918+ >TCONS_00065004 ID=TCONS_00065004|Name=TCONS_00065004|organism=Clytia hemisphaerica|type=CDS|length=1350bp|location=Sequence derived from alignment at scaffold_428:198846..199918+ (Clytia hemisphaerica)
GAATTTTTTTGGAACGAACAAGGCCAATTTTGGCTCCATGAAGGTATTAG
ACGTTTCCATAATGTCCAGATCTTCAAAGGACGCCAAAGGAAGATGGATT
CGTTCTGGAATCAAAGCCCTGGTTTGTTCGCCAGTAATGTCCATTTTGAG
AATCTACCAGAACATTTCAAAGTTCAGAAAGAATacttctttcaaaccat
tccaACTCAACGACCTTACAAACTATTCTTCGCTATCATGTTACTAAAAT
CAGACGACTCTCTTATTACTGTAAAAGATACCAATGTTTTCAGCTTGGTT
GCATCTCAAATCAATACCAACGGGAGTAAGAGGTCCATCATAACGGATCA
AGTAACCTTGGTGGCCGGTCAACCGAAACTACGGATCTGCACCGCTGGAT
CTTCAGATGGGCGTGAACAAATTTGCTTCACAACTGGGCCACTCCCTCAt
ggaaaatttatcaatttcagAGTCAAGAAAGATTACACCTCCTCTGGCTC
AAAAGATACAGCGACGTATTCGTACACTCTTAGAATGTCAGAAGATGTTC
TAAACCCTGGCGAACCCATTTTCAGCACCATGGTAAGGCACCAGTATGAC
GACGTTGATGTGATCTTCGGCCACAGATTGGAGCCAGCAAACGTGTACGT
CCGAAATTTTTATCCAATCATTATGGAATTTTTTTGGAACGAACAAGGCC
AATTTTGGCTCCATGAAGGTATTAGACGTTTCCATAATGTCCAGATCTTC
AAAGGACGCCAAAGGAAGATGGATTCGTTCTGGAATCAAAGCCCTGGTTT
GTTCGCCAGTAATGTCCATTTTGAGAATCTACCAGAACATTTCAAAGTTC
AGAAAGAATacttctttcaaaccattccaACTCAACGACCTTACAAACTA
TTCTTCGCTATCATGTTACTAAAATCAGACGACTCTCTTATTACTGTAAA
AGATACCAATGTTTTCAGCTTGGTTGCATCTCAAATCAATACCAACGGGA
GTAAGAGGTCCATCATAACGGATCAAGTAACCTTGGTGGCCGGTCAACCG
AAACTACGGATCTGCACCGCTGGATCTTCAGATGGGCGTGAACAAATTTG
CTTCACAACTGGGCCACTCCCTCAtggaaaatttatcaatttcagAGTCA
AGAAAGATTACACCTCCTCTGGCTCAAAAGATACAGCGACGTATTCGTAC
ACTCTTAGAATGTCAGAAGATGTTCTAAACCCTGGCGAACCCATTTTCAG
CACCATGGTAAGGCACCAGTATGACGACGTTGATGTGATCTTCGGCCACA
GATTGGAGCCAGCAAACGTGTACGTCCGAAATTTTTATCCAATCATTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065004-exon-scaffold_428-1491911889:198846..199009 | TCONS_00065004-exon-scaffold_428-1491911889:198846..199009 | Clytia hemisphaerica | exon |
| TCONS_00065004-exon-scaffold_428-1510915933:198846..199009 | TCONS_00065004-exon-scaffold_428-1510915933:198846..199009 | Clytia hemisphaerica | exon |
| TCONS_00065004-exon-scaffold_428-1575043694:198846..199009 | TCONS_00065004-exon-scaffold_428-1575043694:198846..199009 | Clytia hemisphaerica | exon |
| TCONS_00065004-exon-scaffold_428-1491911889:199406..199918 | TCONS_00065004-exon-scaffold_428-1491911889:199406..199918 | Clytia hemisphaerica | exon |
| TCONS_00065004-exon-scaffold_428-1510915933:199406..199918 | TCONS_00065004-exon-scaffold_428-1510915933:199406..199918 | Clytia hemisphaerica | exon |
| TCONS_00065004-exon-scaffold_428-1575043694:199406..199918 | TCONS_00065004-exon-scaffold_428-1575043694:199406..199918 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_428 | supercontig | scaffold_428:198846..199918 + |
Blast
The following BLAST results are available for this feature:
|
