TCONS_00065015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065015
Unique NameTCONS_00065015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065015 ID=TCONS_00065015|Name=TCONS_00065015|organism=Clytia hemisphaerica|type=transcript|length=435bp
GAAATTATAAGATTTTATTGTCTAAGAAAGAATGTAAGAATCATAAGTGA
AAttaatacaaaatcaaaactacCGTTTTTAAATATGTCATattaaataa
aagaaacatgtggCTATTCTAGATTTTAAATGACTCATCGCTACTGTTCA
GATCATAGTTGAATCTTTAACGTATTTCTGTCGGTCTGTACCACAAGTCA
TCAATCCTTCTTGAATCTCTCTGAAATATCTGACTGCGAAATCAGTCGGA
TACAAAGCGGCCGGGATATCGTGTACATCATCCTCATCATCTAAGTAATC
ATcaatcacaaattgatttttctcGCTCACCCAGGGTCGACGTGCCACGG
GTCGGTCGTTAAGCATATAACGGGACCATCCGAACGTCGTGTCTAAGAAT
CGCCGGACAGGATCGTCAGAGTTACGCTCTTGACC
Run BLAST on NCBI

transcript from alignment at scaffold_428:366012..366499+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065015 ID=TCONS_00065015|Name=TCONS_00065015|organism=Clytia hemisphaerica|type=transcript|length=488bp|location=Sequence derived from alignment at scaffold_428:366012..366499+ (Clytia hemisphaerica)
GAAATTATAAGATTTTATTGTCTAAGAAAGAATGTAAGAATCATAAGTGA
AAttaatacaaaatcaaaactacCGTTTTTAAATATGTCATattaaataa
aagaaacatgtggCTATTCTAGATTTTAAATGACTCATCGCTACTGTTCA
GATCATAGTTGAATCTTTANTCTAGATTTTAAATGACTCATCGCTACTGT
TCACATCATAGTTGAATCTTTAACGTATTTCTGTCGGTCTGTACCACAAG
TCATCAATCCTTCTTGAATCTCTCTGAAATATCTGACTGCGAAATCAGTC
GGATACAAAGCGGCCGGGATATCGTGTACATCATCCTCATCATCTAAGTA
ATCATcaatcacaaattgatttttctcGCTCACCCAGGGTCGACGTGCCA
CGGGTCGGTCGTTAAGCATATAACGGGACCATCCGAACGTCGTGTCTAAG
AATCGCCGGACAGGATCGTCAGAGTTACGCTCTTGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040761XLOC_040761Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065015-exon-scaffold_428-1491911889:366012..366162TCONS_00065015-exon-scaffold_428-1491911889:366012..366162Clytia hemisphaericaexon
TCONS_00065015-exon-scaffold_428-1510915933:366012..366162TCONS_00065015-exon-scaffold_428-1510915933:366012..366162Clytia hemisphaericaexon
TCONS_00065015-exon-scaffold_428-1575043694:366012..366162TCONS_00065015-exon-scaffold_428-1575043694:366012..366162Clytia hemisphaericaexon
TCONS_00065015-exon-scaffold_428-1491911889:366216..366499TCONS_00065015-exon-scaffold_428-1491911889:366216..366499Clytia hemisphaericaexon
TCONS_00065015-exon-scaffold_428-1510915933:366216..366499TCONS_00065015-exon-scaffold_428-1510915933:366216..366499Clytia hemisphaericaexon
TCONS_00065015-exon-scaffold_428-1575043694:366216..366499TCONS_00065015-exon-scaffold_428-1575043694:366216..366499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:366012..366499 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.292591	0	30.153	12.2615	24.5113	32.4361	11.5146	4.95881	74.9511	104.629	7.43405	17.028	13.7565	12.3867	23.3045	36.1634	115.659	140.187	143.965	201.543	39.2829	12.6327	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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