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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065054 ID=TCONS_00065054|Name=TCONS_00065054|organism=Clytia hemisphaerica|type=transcript|length=1069bp
cgaaaataaatttagCATGTATAATTTCTGAATGTAATATTGTTACAAAT
ATGAAAATCTATCTAAATCttaagcaaaattttgaaaaaatataggtctg
taaaatacatctTCTGGATGTTTTCGAAAATTTCGGTTCCGGCAAAACAT
ACCCCACCTCTCGCCACATCTCCGTCTACCATTTTTCTTCGATCTTTTAC
ATCTTCCAGAAAACTTGTATTGGTGGAGAAAACTTTAAGGAACGTGCTGG
ACGATACTGCGGAAGTCTCCGTGTCTTGAACTCATACTGGATTGCTCAAG
ATTCCACCTTCAAATATTTCGAAGTAATCATGGTCGACCCACAACATAAA
GCTATCCGAAGAGATCCACGCATCAACTGGATCGTCAAAAGCGTACATAA
GCATCGTGAATTACGAGGACTTACTTCTGCTGGACGCAAAAACCGTGGAA
TTGCCAAAGGACATGGTTATAATAAGGTCAAGTCATCTTCAAGACGTGCC
ACATGGAAGAAACACAATTTGGTCAGCTTACGTCGTTATCGTTAAGTTAT
TGCCACCTTGTAATATTTCTCCAATTCAAAATACAAATATGCACCTGGAA
GGGAATATTCTCGTTTCTCGAATTCTTCTTTGATTAAATTAATCTAATTC
CTTGGCTGAATCTGGCTAGAGAGATACCTTATTTTGGCGACACTAATTTT
GACCAAGAAAGTCTTTCGTTTTGACGAGCGGCAAAAATCCTGAACAtttc
taattttggcgaatgacagcgtaaatctgttctattttgtcttatttgaa
gctttttttgtgaactcaAGATTTTGGCAAACTAcctgcaaccgcgaaat
taaattcccgtcaaatttagTTTATCCagctatccgccaaattaaattca
ctctgagaaaactttttcggccatttgCGAAATgaaatttccgccaaaat
ttcttcctttaaggtattaaattttgatctatctttagaaatttttgaaa
aactggtTTATGAATTTAATCATGAAACTTGCGTTATCAACCTTTGCTTC
Agccgtacaaacttttgcg Run BLAST on NCBI transcript from alignment at scaffold_428:467535..474770- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065054 ID=TCONS_00065054|Name=TCONS_00065054|organism=Clytia hemisphaerica|type=transcript|length=7236bp|location=Sequence derived from alignment at scaffold_428:467535..474770- (Clytia hemisphaerica)
CGAAAATAAATTTAGCATGTATAATTTCTGAATGTAATATTGTTACAAAT
ATGAAAATCTATCTAAATCTTAAGCAAAATTTTGAAAAAATATAGGTCTG
TAAAATACATCTTCTGGATGTTTTCGAAAATTTCGGTTCCGGCAAAACAT
ACCCCACCTCTCGCCACATCTCCGTCTACCATTTTTCTTCGATCTTTTAC
ATCTTCCAGAAAACTTGTATTGGTGGAGAAAACTTTAAGGTAAGAAAATC
GTATGATATCTGCCCAATCCTTTACTCCCCTTTCCACTGCACCAGTTTTT
CTTGCTCTTTAATACTCATTTTATGGACTCGTTCATCTAATTTGTAACAC
CACCCTTGCTGGTGTATCCAGGACGGCCTTTACTTTCNTCATTTTATGGA
CTCGTTCATCTAATTTGTAACACCACCCTTGCTGGTGTATCCAGGACGGC
CTTTACTTTCCACATAGTGATTTTTCTAGGCACTTTTTAATGTCCGTATA
TAGACAGGCAGCTGACGACATCTAAAATCTGGACGACTTTGGGACAAACG
TGGAGTTGATTTTTCTTGTTCCCATATATCTACTGATCCAAAAAATTTTA
CTTGGCGTCCGAAAATTTATTTAACGGACATGTCCGGTAGTAATTTGTCA
AATGATGACGTCACCACCAAAAGTGAAAATGATTGATTTCAGCATATAAT
AATGATATATATACCATTCAATGCATTTTTCGATCTAGATTCTAAATCAC
ATCAGTCTCAATAGGTAAAAATTTAGATTTCAAAAGTTATGACTTAAATT
TGACATGTGATTTTGGTCAATCATGAACGACCCTCGACATGGCCGGAGAA
TTCTCGGGCCAAAACTTTTATTGGAATTCGCGTAGGCCACACTCTGGCCA
CACTCGGGCCAATTTTTGAAAACATGATTTAAACAGGCGTGTAATTTCAG
GACTGAATTTTTTTAACATTTTCTTTGAGAAAAACTTGGTTTCTCTTAAT
TACATTAAATATATGAATGTTGTAAATTCATATAAATATTAAATGTCTTA
GGTATTTGGTATGAAAACATAGTTATAAATATACTTAGGGTGGAAATATT
TGCTAGTAAACAGGACCCTGCCGACGCACCGGACTGTCCGGTGTATTTGT
CCGGTGGCAAAAAGTATCCTTTCGCTACACCGGACGCAATAAGTCCGGTG
TCAGTCCGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCGGACATTTATGAAACAAAAAATTA
AGAAACACCGGACGCACCGGACTGGTCATGTCCGGTGTTTTGATTGTCCG
GTGGAAAAAATATCCTTTTCCAACACCGGAATACATACGACTTTCTTAAG
TCCGGTGTAGAGATTGTCCGGTGGTAAAAAAAATTCTCATTTTACACCGG
ACTTTCGCGTGTCCGGTGTTCGTTAAGTCCGGTGCGTCGGCAGGGTCCTT
AGTAAACTGGTCCTGGTTCTAAACTGAAGCGTGTCCACGGGAAGCTCGTA
AAGTTTTTTTGAGCCATATAAACAAAACAGACAAATCTTATTTTGTACTA
TTTTGTTTGCCGTGGCGCTTAGTTGAGGAAATACGGTACCTAACTCAGGA
GTTTACTAGGCTGCTGGCACCCATTACAGTAACGGATTCGATTTGATTTT
GAACGATTTGATAACGATTAGAATCTAGATCAAAACATTTGAAAGAGAAT
TCGTCATTCTTTTTGTCAAATAGGCTGTTGGAAAATAAAATGTCGGTCAT
TGAAGTTGCAAGAGATCTGTCGCATGGTTTGCGCATTAAGTTTAACTGAG
CGCCATGTGATTTTCTGCTATTGAAAAATCTCTCACTTCATTTTTAAATG
CAGTTAACTTTTTTAAAAGCTCTAGGATTATAAATATTCAGAATAGATTT
AAACTCTGTCATATTGCTAGATATCTGTTTGTATGGTTTGCACCTGAGGT
TCAACTGAGTGCCATGCATGTGATAGCCTCAGTTGAAATCATGTTTTGCT
TTTGAGAATTATCACAACTATCCTCAAATACCTTCTGTAGTTTTCTCTGT
TGACAGTCTTGGTTATTACATGAAGGTAATAAAGATATATGGATGGAGAG
AAAACGTCTCGGTAATGACCTAAATGGTCGTTGAAATCTTTTTAATAAAT
CTATTCAAAGCGGCTTTTCTTTGATGTACCATCATTGGAAGCGAAAAAAT
CCAAAATGTAAATTTATAAGAACAGAAAGAGGCTGGTCCGTTGATTTTGA
AAAANCACTTGAGAAAGTCAGAAAATCAATATAGAAGATAGGAAAGTACC
GTAGATTAGTCAATTAGACTATTGTATTATCGACATGCGTCCTTTAAGCT
TGACAAAGTTTTAGAAACATGTAAGAAACATTTAAGGCTCAAAAGGCCGA
TTTCTTAAGAAACATTGAGGCTGCTTGGGAAAACTAGTTTCTTAAAAGAA
AAAAAACGTGTAGATGTCTCCTTACAAGTTTGTAGATAGGATTAGGCTAA
AATAGGAAAGACATTGAGCAACATACAGTGTTAAAAGTTCTTCCGTCTCA
GACGGATTTCCGTCTCAGACGGATTTCCGTCTCAGAGAAGTATATAGAGA
GGCTTTTCCGTCTCAAAGTTCTGCATAATTCACCAAACATTCAAGAATAT
GTACTGATTTGCTGTGTAAAATCCATTTTCCGTCTCAGACGAAAATCTTG
CTTTGACCACTGAACATATTTTTCCTAACAATTATTGTATTTTTTGCGGG
GATTATACCTGAAAACCTATCCAAGATTCTGTATGATGAACAAAAAGTGA
TTTCCGTTCTACTGACATCTTCAGTGATGGTTTTTCTACATGATCTGACA
GAAATTTTTTAATTAAGTCAACCAAGTTGAACTTCCCCTTTCTGGAAATC
TGAAATTTTGTCAATAATGAATAAAATGATGATTTCCGTTCTACTGACTT
ATTCAGTGATGCGTTTTCTACATGAGCTGAGACACGAATTGTTACAAATA
CAAGGTTTTGAGATGTCCTTGTTTTACTATTTTTGGTAATTTAAAAAAAA
AATCTTAACTACTGCTTTTTATTGTATTTTATCATTTGTTTACTAACTTC
ACTTGAGAATTGGCTGTGTGGTCTTTTGATGTTTTTGATATTTACAGCTT
GGTCTACCTTAATGCTTGTTAACCCAGTGTAGACAGATTTTAGGCTTTAC
ATGCGCTGCCTTTAGATATTGGAATGTAAATTACTTTAGCACGACCAGGC
GGTAAACCAAAAACATCATCTGGATAACCAGGGTTTATGCCTGAAAGCGT
ATTTGATATTCTGAATGATGAACAAAAAGTGATTTCCGTTCTACTGACAT
CTTCAGTGATGGTTTTTCTACATGATCTGACAGAAATTTTTTAATAAAGT
CAACCAAGTTGAACTTCCCCTTTCTGGGAATCTGAAATTTGTCAATGATG
AATAAAATGATGATTTCCGTTCTACTGACTTATTCAGTGATGCATTTTCT
ACATGAGCTGAGACAAGAATTGTTACAAATGCAGGGTTTTGAGATGTCCT
AGTTTTACTATTTTTGGTAATTTAAAAAAAAATCTTAACTGCTTTTTATT
GTATTTTATCATTTGTTTACTAACTTCACTTGAGAATTGGCTGTGTGGTC
TTTTGATGTTTTTGATATTTACAGCTTGGTCTACCTTAATGCTTGTTAAC
CCAGTGTAGACAGATTTTAGGCTTTACATGCGCTGCCTTTAGATATTGGA
ATGTAAATTACTTTAGCACGACCAGGCGGTAAACCAAAAACATCATCTGG
ATAACCAGGGTTTATGCCTGAAAGCGTATTTGATATTCTGAATGATGAAC
AAAAAGTGATTTCCGTTCTACTGACATCTTCAGTGATGGTTTTTCTACAT
GATCTGACAGAAATTTTTTAATAAAGTCAACCAAGTTGAACTTCCCCTTT
CTGGGAATCTGAAATTTGTCAATGATGAATAAAATGATGATTTCCGTTCT
ACTGACTTATTCAGTGATGCATTTTCTACATGAGCTGAGACAAGAATTGT
TACAAATGCAGGGTTTTGAGATGTCCTAGTTTTACTATTTTTGGTAATTT
AAAAAAAAATCTTAACTGCTTTTTATTGTATTTTATCATTTGTTTACTAA
CTTCACTTGAGAATTGGCTGTGTGGTCTTTTGATGTTTTTGATATTTACA
GCTTGGTCTACCTTAATGCTTGTTAACCCAGTGTAGACAGATTTTAGGCT
TTACATGCGCTGCCTTTAGATATTGGAATGTAAATTACTTTAGCACGACC
AGGCGGTAAACCAAAAACATCATCTGGATAACCAGGGTTTATGCCTGAAA
GCGTATTTGATATTCTGAATGATGAACAAAAAGTGATTTCCGTTCTACTG
ACATCTTCAGTGATGGTTTTTCTACATGATCTGACAGAAATTTTTTAATA
AAGTCAACCAAGTTGAACTTCCCCTTTCTGGGAATCTGAAATTTGTCAAT
GATGAATAAAATGATGATTTCCGTTCTACTGACTTATTCAGTGATGCATT
TTCTACATGAGCTGAGACAAGAATTGTTACAAATGCAGGGTTTTGAGATG
TCCTAGTTTTACTATTTTTGGTAATTTAAAAAAAAATCTTAACTGCTTTT
TATTGTATTTTATCATTTGTTTACTAACTTCACTTGAGAATTGGCTGTGT
GGTCTTTTGATGTTTTTGATATTTACAGCTTGGTCTACCTTAATGCTTGT
TAACCCAGTGTAGACAGATTTTAGGCTTTACATGCGCTGCCTTTAGATAT
TGGAATGTAAATTACTTTAGCACGACCAGGCGGTAAACCAAAAACATCAT
CTGGATAACCAGGGTTTATGCCTGAAAGCGTATTTGATATTCTGAATGAT
GAACAAAAAGTGATTTCCGTTCTACTGACATCTTCAGTGATGGTTTTTCT
ACATGATCTGACAGAAATTTTTTAATAAAGTCAACCAAGTTGAACTTCCC
CTTTCTGGGAATCTGAAATTTGTCAATGATGAATAAAATGATGATTTCCG
TTCTACTGACTTATTCAGTGATGCATTTTCTACATGAGCTGAGACAAGAA
TTGTTACAAATGCAGGGTTTTGAGATGTCCTAGTTTTACTATTTTTGGTA
ATTTAAAAAAAAATCTTAACTGCTTTTTATTGTATTTTATCATTTGTTTA
CTAACTTCACTTGAGAATTGGCTGTGTGGTCTTTTGATGTTTTTGATATT
TACAGCTTGGTCTACCTTAATGCTTGTTAACCCAGTGTAGACAGATTTTA
GGCTTTACATGCGCTGCCTTTAGATATTGGAATGTAAATTACTTTAGCAC
GACCAGGCGGTAAACCAAAAACATCATCTGGATAACCAGGGTTTATGCCT
GAAAGCGTATTTGATATTCTGAATGATGAACAAAAAGTGATTTCCGTTCT
ACTGACATCTTCAGTGATGGTTTTTCTACATGATCTGACAGAAATTTTTT
AATAAAGTCAACCAAGTTGAACTTCCCCTTTCTGGGAATCTGAAATTTGT
CAATGATGAATAAAATGATGATTTCCGTTCTACTGACTTATTCAGTGATG
CATTTTCTACATGAGCTGAGACAAGAATTGTTACAAATGCAGGGTTTTGA
GATGTCCTAGTTTTACTATTTTTGGTAATTTAAAAAAAAATCTTAACTGC
TTTTTATTGTATTTTATCATTTGTTTACTAACTTCACTTGAGAATTGGCT
GTGTGGTCTTTTGATGTTTCTGATATTTACAGCTTGGTCTACCTTAATGC
TCATTAACCCAGGGTAGACAGATTTTAGGCTTTACATGCGCTGCCTTCAG
ATATTGGAATGTAAATTACTTTAGCACGACCAGGCGGTAAACCAAAAACA
TCATCTGGATAACCAGGGTTTATGCCTGAAAGCGTATTTGATATTCTGAA
TGATGAACAAAAAGTGATTTCCGTTCTACTGACATCTTCAGTGATGGTTT
TTCTACATGATCTGACAGAAATCTTTATATAAAATCAACAAGTTTGACCT
CCCTTCCTGTCCCTTCTGAAAATCTTTCTGAACATTTTGTCAATGATGAA
TAAAATTATGATTTCCGTTCTACTGACTTATCCAGTGATGCGTTTTCTAC
ATGATCTGAGACACGAACAGAACTTTGAAGGTCTGACCTGATATATCTGA
TTGATTAGAACAGGTTAGAATTCTTTCTTATGAATTTTTGTTGTTTTACA
TGTCAGGAACGTGCTGGACGATACTGCGGAAGTCTCCGTGTCTTGAACTC
ATACTGGATTGCTCAAGATTCCACCTTCAAATATTTCGAAGTAATCATGG
TCGACCCACAACATAAAGCTATCCGAAGAGATCCACGCATCAACTGGATC
GTCAAAAGCGTACATAAGCATCGTGAATTACGAGGACTTACTTCTGCTGG
ACGCAAAAACCGTGGAATTGCCAAAGGACATGGTTATAATAAGGTCAAGT
CATCTTCAAGACGTGCCACATGGAAGAAACACAATTTGGTCAGCTTACGT
CGTTATCGTTAAGTTATTGCCACCTTGTAATATTTCTCCAATTCAAAATA
CAAATATGCACCTGGAAGGGAATATTCTCGTTTCTCGAATTCTTCTTTGA
TTAAATTAATCTAATTCCTTGGCTGAATCTGGCTAGAGAGATACCTTATT
TTGGCGACACTAATTTTGACCAAGAAAGTCTTTCGTTTTGACGAGCGGCA
AAAATCCTGAACATTTCTAATTTTGGCGAATGACAGCGTAAATCTGTTCT
ATTTTGTCTTATTTGAAGCTTTTTTTGTGAACTCAAGATTTTGGCAAACT
ACCTGCAACCGCGAAATTAAATTCCCGTCAAATTTAGTTTATCCAGCTAT
CCGCCAAATTAAATTCACTCTGAGAAAACTTTTTCGGCCATTTGCGAAAT
GAAATTTCCGCCAAAATTTCTTCCTTTAAGGTATTAAATTTTGATCTATC
TTTAGAAATTTTTGAAAAACTGGTTTATGAATTTAATCATGAAACTTGCG
TTATCAACCTTTGCTTCAGCCGTACAAACTTTTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065054-exon-scaffold_428-1575043694:474532..474770 | TCONS_00065054-exon-scaffold_428-1575043694:474532..474770 | Clytia hemisphaerica | exon |
| TCONS_00065054-exon-scaffold_428-1575043694:467535..468364 | TCONS_00065054-exon-scaffold_428-1575043694:467535..468364 | Clytia hemisphaerica | exon |
| TCONS_00065054-exon-scaffold_428-1510915933:474532..474770 | TCONS_00065054-exon-scaffold_428-1510915933:474532..474770 | Clytia hemisphaerica | exon |
| TCONS_00065054-exon-scaffold_428-1510915933:467535..468364 | TCONS_00065054-exon-scaffold_428-1510915933:467535..468364 | Clytia hemisphaerica | exon |
| TCONS_00065054-exon-scaffold_428-1491911889:474532..474770 | TCONS_00065054-exon-scaffold_428-1491911889:474532..474770 | Clytia hemisphaerica | exon |
| TCONS_00065054-exon-scaffold_428-1491911889:467535..468364 | TCONS_00065054-exon-scaffold_428-1491911889:467535..468364 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_428 | supercontig | scaffold_428:467535..474770 - |
Blast
BLAST of TCONS_00065054 vs. Swiss-Prot (Human)
Match: RL15 (60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2) HSP 1 Score: 147.517 bits (371), Expect = 9.263e-42 Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 3
Query: 237 KERAGRYCGSLRVLNSYWIAQDSTFKYFEVIMVDPQHKAIRRDPRINWIVKSVHKHRELRGLTSAGRKNRGIAKGHGYNKVKSSSRRATWKKHNLVSLRRYR 542
+ERAGR+CG+LRVLNSYW+ +DST+K+FEVI++DP HKAIRR+P WI K VHKHRE+RGLTSAGRK+RG+ KGH ++ SRRA W++ N + L RYR
Sbjct: 103 EERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204
The following BLAST results are available for this feature:
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