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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065027 ID=TCONS_00065027|Name=TCONS_00065027|organism=Clytia hemisphaerica|type=transcript|length=967bp
TCACTTCAAAAACGACTCAACCATTTACAAGAATTGTCATTACAACCACG
GCTCACCCAAGATCGATGCTTGTACCTCATTCAAAAAATCCCTCAAATTC
TTCTCATCGATACTAAAAGCAATTTGACGGAGAAAATCAAGAATCTTCAA
ACACTTGGATTCAACGATCAACAAATCTTCGAATTGGTCATGAAACATCC
AGCTATATTAACTTACAGCGTTGACAATGTTAAAGCAAAGGTGACGTTTA
TATCGGAGAAAGCAAATGGGCGTTTAGCATTGCTGGTCAAATTTCCACGT
GTCTTCACCTCATCTTTGGTAAGACTAGAGGAACGATATCATTATTTACT
ACAGGAGGGTTTCCTGACGGAGAAGTCACGTTTTACAGAAAACAAATTAC
GTGCACTGGTACTTACTAAAGACTCTGATTTCGTGTATCGCGTCACGAAT
GGTCGAATGAAAGATTACCGACAATTCCAGAAAGATTTTCAAACGGACAA
TAAGTTTGACGATTTTAACGAGGGAGAAGAGGAGGAAATTAATGATCAAT
TTGACTTTGACGACAAAGAGGATATTGAAATATCAAGATGACGTATTATT
ACATCTTGGAATATTACCAGATTGGTATCTCAAGTATTCTTTTTATAAGC
TTTTGTCAGTCATTGACTAGCCAATTTATGGTAAAATggtatgtttgatt
tttttctaggaGAAGAAAATACTcgaaatttcagaattttactCTTCTCG
TCTTACGGATTCGGACAAATTgtaattttcaccttttttcttGTGATTGA
TTAAACCTTATTGTACTCTAAAATGTGCAATTACTATCACTAATGAACTC
CGTCAAGACATTTCATTGTAGAAAAAAAGTCCATCTACCTTATCGAGCCT
TTTTAAGCTGGtccttacacgtttttttataagaacaaactatataagaa
cataaggcttcggtggc Run BLAST on NCBI protein sequence of TCONS_00065027-protein >TCONS_00065027-protein ID=TCONS_00065027-protein|Name=TCONS_00065027-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
SLQKRLNHLQELSLQPRLTQDRCLYLIQKIPQILLIDTKSNLTEKIKNLQ
TLGFNDQQIFELVMKHPAILTYSVDNVKAKVTFISEKANGRLALLVKFPR
VFTSSLVRLEERYHYLLQEGFLTEKSRFTENKLRALVLTKDSDFVYRVTN
GRMKDYRQFQKDFQTDNKFDDFNEGEEEEINDQFDFDDKEDIEISR Run BLAST on NCBI transcript from alignment at scaffold_428:538610..541661+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065027 ID=TCONS_00065027|Name=TCONS_00065027|organism=Clytia hemisphaerica|type=transcript|length=3052bp|location=Sequence derived from alignment at scaffold_428:538610..541661+ (Clytia hemisphaerica)
TCACTTCAAAAACGAGTAAGTTTATTCTTTTACCTCCCTCTTGCTAgata
aaacgaaaaaattgaatatacaGTCAACACTTACGTTATCTAGAGCCCAT
AAACCGATCTAGTTCAATTtacctttttagtggaaaattgttcggtaaaa
agtgacaaaaaatcgCCTCGGTATAACGAGTGGGTGAATTtcctaccggg
tgcgccacaaaaaagtttctctctttaaaactaattttcccgaaatctaa
aaattttaaaagaaccattcctattcaaTTGGAAAGAAGATATATAAACT
TAacttttgatgggtcatttatcaaattcggttcattagatcaaaagtta
tgctctattgaataaaaaagttactttctgaaggtactcaaaaacgttaa
aaatcgacctatcaaattaaacagaagcataataacatgatgcatcagta
ctttcgtttcagtcattaaaaatgataattagctgtatAATTGACagttt
gttatataaaggaagattgaatttcaataaaaggcagaagattcgtcgaa
aaaagccaaaaagtctggtaaaatttaaaaaaatacatcgaatattggtt
tcgaggtacatccagccttacatagactttatctggtctagaaccaaaaa
tctgtgGAAGATTTCGTTAAAAGTAAATTGgaatgattttaatgaacaTT
TTAAACCATGTCGAtcaatcagtttcaaaatttatgtgtttaattactga
aaaaatggtcttaatcatgtaaagcctcttacgattgccaattttaaaat
aaaaatttaataggtcgatttttaacgttttcgggcactttctgaaagta
acttttttattcaattgagcataacttttgatccaatgaatcgaatttaa
taaatgaaccatcaaaatttaagtttatctttcttctttctgatgGAATA
GGAATTGTTGTCTCTTAATtcttagatttcgaaaaaatcagtttcaaaga
gagaaacttttttgtggcgcacccggtatgtaATGTCAATTTTACATCTG
CAATGAAAATTTTGCTACATACACTCTTCtaaaggcctgtttccatcgac
TCTAACACAATATGTTtgattacatttttttatttactcagcagtttttc
tttttcttgattaGTTCAAAGATTATCGATTGAGATGTGCGCTCCTATAC
GCTCAAAACTTTCAGCGGAGAAAAGAGCACAAGAGTACAAAAGCGTACAA
GAGCGTATGCATTTTGTGTACAAGAAAATCTAATTTGTGAGGTGctattt
tcggaaattttggcctAGCGTGCATGCTCGTGAGATCGAgaatacaaaac
aaaacaaattttggtttgCTAGTTTTGCTATTTGCTAATTTTCCACATTT
TCGACTAAGTTTCTGTCACTGACTTAATTGCACAGCAATAGCTTCTTCcc
gatggaaacaggccttaCAGTATTCATTCATTAAGTTTTATTCTGAAAAA
GAATACATGTTTTAAACTCATTTTTCCTCTTAGCTCAACCATTTACAAGA
ATTGTCATTACAACCACGGCTCACCCAAGATCGATGCTTGTACCTCATTC
AAAAAATCCCTCAAATTCTTCTCATCGATACTAAAAGCAATTTGACGGAG
AAAATCAAGAATCTTCAAACACTTGGATTCAACGATCAACAAATCTTCGA
ATTGGTCATGAAACATCCAGCTATATTAACTTACAGCGTTGACAATGTTA
AAGCAAAGGTATTAAAATTAATCAAGTTTGGTGGAGACTTCTTTCTTTCT
GCTACCTggaaggaaagaaattttggcggaaaggaAATTTAACATTTACC
GCCATCCAccaaatttaattcccgccTAGTTTAAATTACTGTTTTGattc
ccccaaatgtgtgctattgCAGGCCATAAAACAGGTGTTTTCTTAtttaa
tggcgttttttggacaaaatttcggccatccgccaaattgaattcccgcc
aaaatttcttccataTGGTACTTCACTTTATCTCTGGACATGTTCACATT
TTGACCGATTACTAAGATTTTAGAAGTCGAGGTCCTGAAGAttatgattg
attgattgattgattgattgattgattgattgattgattgattgattgat
tgattgattgattgattgattgattgattgattgattgattgattgattg
attgattgattgattgattgattgattgattgattgattgattgattgat
tgattgattgattgattgattgattgattgattgattgattgattgattg
attgattgacttTCTTCCATTCCAGGTGACGTTTATATCGGAGAAAGCAA
ATGGGCGTTTAGCATTGCTGGTCAAATTTCCACGTGTCTTCACCTCATCT
TTGGTAAGACTAGAGGAACGATATCATTATTTACTACAGGAGGGTTTCCT
GACGGAGAAGTCACGTTTTACAGAAAACAAATTACGTGCACTGGTACTTA
CTAAAGACTCTGATTTCGTGTATCGCGTCACGAATGGTCGAATGAAAGAT
TACCGACAATTCCAGAAAGATTTTCAAACGGACAATAAGTTTGACGATTT
TAACGAGGGAGAAGAGGAGGAAATTAATGATCAATTTGACTTTGACGACA
AAGAGGATATTGAAATATCAAGATGACGTATTATTACATCTTGGAATATT
ACCAGATTGGTATCTCAAGTATTCTTTTTATAAGCTTTTGTCAGTCATTG
ACTAGCCAATTTATGGTAAAATggtatgtttgatttttttctaggaGAAG
AAAATACTcgaaatttcagaattttactCTTCTCGTCTTACGGATTCGGA
CAAATTgtaattttcaccttttttcttGTGATTGATTAAACCTTATTGTA
CTCTAAAATGTGCAATTACTATCACTAATGAACTCCGTCAAGACATTTCA
TTGTAGAAAAAAAGTCCATCTACCTTATCGAGCCTTTTTAAGCTGGtcct
tacacgtttttttataagaacaaactatataagaacataaggcttcggtg
gc Coding sequence (CDS) from alignment at scaffold_428:538610..541661+ >TCONS_00065027 ID=TCONS_00065027|Name=TCONS_00065027|organism=Clytia hemisphaerica|type=CDS|length=1773bp|location=Sequence derived from alignment at scaffold_428:538610..541661+ (Clytia hemisphaerica)
TCACTTCAAAAACGACTCAACCATTTACAAGAATTGTCATTACAACCACG
GCTCACCCAAGATCGATGCTTGTACCTCATTCAAAAAATCCCTCAAATTC
TTCTCATCGATACTAAAAGCAATTTGACGGAGAAAATCAAGAATCTTCAA
ACACTTGGATTCAACGATCAACAAATCTTCGAATTGGTCATGAAACATCC
AGCTATATTAACTTACAGCGTTGACAATGTTAAAGCAAAGGTGACGTTTA
TATCGGAGAAAGCAAATGGGCGTTTAGCATTGCTGGTCAAATTTCCACGT
GTCTTCACCTCATCTTTGGTAAGACTAGAGGAACGATATCATTATTTACT
ACAGGAGGGTTTCCTGACGGAGAAGTCACGTTTTACAGAAAACAAATTAC
GTGCACTGGTACTTACTAAAGACTCTGATTTCGTGTATCGCGTCACGAAT
GGTCGAATGAAAGATTACCGACAATTCCAGAAAGATTTTCAAACGGACAA
TAAGTTTGACGATTTTAACGAGGGAGAAGAGGAGGAAATTAATGATCAAT
TTGACTTTGACGACAAAGAGGATATTGAAATATCAAGATGATCACTTCAA
AAACGACTCAACCATTTACAAGAATTGTCATTACAACCACGGCTCACCCA
AGATCGATGCTTGTACCTCATTCAAAAAATCCCTCAAATTCTTCTCATCG
ATACTAAAAGCAATTTGACGGAGAAAATCAAGAATCTTCAAACACTTGGA
TTCAACGATCAACAAATCTTCGAATTGGTCATGAAACATCCAGCTATATT
AACTTACAGCGTTGACAATGTTAAAGCAAAGGTGACGTTTATATCGGAGA
AAGCAAATGGGCGTTTAGCATTGCTGGTCAAATTTCCACGTGTCTTCACC
TCATCTTTGGTAAGACTAGAGGAACGATATCATTATTTACTACAGGAGGG
TTTCCTGACGGAGAAGTCACGTTTTACAGAAAACAAATTACGTGCACTGG
TACTTACTAAAGACTCTGATTTCGTGTATCGCGTCACGAATGGTCGAATG
AAAGATTACCGACAATTCCAGAAAGATTTTCAAACGGACAATAAGTTTGA
CGATTTTAACGAGGGAGAAGAGGAGGAAATTAATGATCAATTTGACTTTG
ACGACAAAGAGGATATTGAAATATCAAGATGATCACTTCAAAAACGACTC
AACCATTTACAAGAATTGTCATTACAACCACGGCTCACCCAAGATCGATG
CTTGTACCTCATTCAAAAAATCCCTCAAATTCTTCTCATCGATACTAAAA
GCAATTTGACGGAGAAAATCAAGAATCTTCAAACACTTGGATTCAACGAT
CAACAAATCTTCGAATTGGTCATGAAACATCCAGCTATATTAACTTACAG
CGTTGACAATGTTAAAGCAAAGGTGACGTTTATATCGGAGAAAGCAAATG
GGCGTTTAGCATTGCTGGTCAAATTTCCACGTGTCTTCACCTCATCTTTG
GTAAGACTAGAGGAACGATATCATTATTTACTACAGGAGGGTTTCCTGAC
GGAGAAGTCACGTTTTACAGAAAACAAATTACGTGCACTGGTACTTACTA
AAGACTCTGATTTCGTGTATCGCGTCACGAATGGTCGAATGAAAGATTAC
CGACAATTCCAGAAAGATTTTCAAACGGACAATAAGTTTGACGATTTTAA
CGAGGGAGAAGAGGAGGAAATTAATGATCAATTTGACTTTGACGACAAAG
AGGATATTGAAATATCAAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065027-exon-scaffold_428-1491911889:538610..538624 | TCONS_00065027-exon-scaffold_428-1491911889:538610..538624 | Clytia hemisphaerica | exon |
| TCONS_00065027-exon-scaffold_428-1510915933:538610..538624 | TCONS_00065027-exon-scaffold_428-1510915933:538610..538624 | Clytia hemisphaerica | exon |
| TCONS_00065027-exon-scaffold_428-1575043694:538610..538624 | TCONS_00065027-exon-scaffold_428-1575043694:538610..538624 | Clytia hemisphaerica | exon |
| TCONS_00065027-exon-scaffold_428-1491911889:540143..540367 | TCONS_00065027-exon-scaffold_428-1491911889:540143..540367 | Clytia hemisphaerica | exon |
| TCONS_00065027-exon-scaffold_428-1510915933:540143..540367 | TCONS_00065027-exon-scaffold_428-1510915933:540143..540367 | Clytia hemisphaerica | exon |
| TCONS_00065027-exon-scaffold_428-1575043694:540143..540367 | TCONS_00065027-exon-scaffold_428-1575043694:540143..540367 | Clytia hemisphaerica | exon |
| TCONS_00065027-exon-scaffold_428-1491911889:540935..541661 | TCONS_00065027-exon-scaffold_428-1491911889:540935..541661 | Clytia hemisphaerica | exon |
| TCONS_00065027-exon-scaffold_428-1510915933:540935..541661 | TCONS_00065027-exon-scaffold_428-1510915933:540935..541661 | Clytia hemisphaerica | exon |
| TCONS_00065027-exon-scaffold_428-1575043694:540935..541661 | TCONS_00065027-exon-scaffold_428-1575043694:540935..541661 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_428 | supercontig | scaffold_428:538610..541661 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003690 | MTERF |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003690 | double-stranded DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003690 |
double-stranded DNA binding |
Blast
The following BLAST results are available for this feature:
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