TCONS_00065098 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065098
Unique NameTCONS_00065098
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length466

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065098 ID=TCONS_00065098|Name=TCONS_00065098|organism=Clytia hemisphaerica|type=transcript|length=466bp
AGATTTTAACAACTGACTAACAACTGATTCCTCCAGATTGAAATTTGAGT
AATCCATCATCTTTCTAAATTTGTAGTATCTTAATAAATTTCAGAAGCGC
TATGGAAGGCCATCTTTTGAAATTAGACTACAGTAAGACTTTATTTTGGA
TTTCTACGAcgaatatttcaaacgattttcaaagatttttgaagcttttt
tgattTAAATCTTTTGTGATGGAAACTAGCATAACAGGGTCATGTTTTta
acttaaatgtttttaatatattGTTTTATGTAATTTCTTTGATGTAATGA
ATAAGTGACAAGTCGTTTGTGACGACGGCCTAGAACCGCTAGTTAGATAT
ATTTCCCGAACTAGCTTTagattttaactgtttttgaaataatattttca
taataaggaaaataaaggtttttgattactttaaatagtttttaaaattg
aaagctATGCATAGTC
Run BLAST on NCBI

transcript from alignment at scaffold_43:47076..47541

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065098 ID=TCONS_00065098|Name=TCONS_00065098|organism=Clytia hemisphaerica|type=transcript|length=466bp|location=Sequence derived from alignment at scaffold_43:47076..47541 (Clytia hemisphaerica)
GACTATGCATagctttcaattttaaaaactatttaaagtaatcaaaaacc
tttattttccttattatgaaaatattatttcaaaaacagttaaaatctAA
AGCTAGTTCGGGAAATATATCTAACTAGCGGTTCTAGGCCGTCGTCACAA
ACGACTTGTCACTTATTCATTACATCAAAGAAATTACATAAAACaatata
ttaaaaacatttaagttaAAAACATGACCCTGTTATGCTAGTTTCCATCA
CAAAAGATTTAaatcaaaaaagcttcaaaaatctttgaaaatcgtttgaa
atattcgTCGTAGAAATCCAAAATAAAGTCTTACTGTAGTCTAATTTCAA
AAGATGGCCTTCCATAGCGCTTCTGAAATTTATTAAGATACTACAAATTT
AGAAAGATGATGGATTACTCAAATTTCAATCTGGAGGAATCAGTTGTTAG
TCAGTTGTTAAAATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040818XLOC_040818Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065098-exon-scaffold_43-1491911889:47076..47541TCONS_00065098-exon-scaffold_43-1491911889:47076..47541Clytia hemisphaericaexon
TCONS_00065098-exon-scaffold_43-1510915933:47076..47541TCONS_00065098-exon-scaffold_43-1510915933:47076..47541Clytia hemisphaericaexon
TCONS_00065098-exon-scaffold_43-1575043694:47076..47541TCONS_00065098-exon-scaffold_43-1575043694:47076..47541Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:47076..47541 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.249629	0	0	0	0.441323	0.354959	0.429025	0.116328	0.432275	0.139859	0.319825	0.858016	0	0.553171	0	0	0	0.723131	0	0.197353	0.239637	0	0.239709	0.326285	0.590955	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065098 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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