|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065093 ID=TCONS_00065093|Name=TCONS_00065093|organism=Clytia hemisphaerica|type=transcript|length=2626bp
CGAAATTGACGTTGAAGGCTGACAAATGCCAAATTGATGaATTGAGCAAC
AAAGTTGACCAGCTATCAATGGAATCAAAATCCGTAAAGGTTACAACAAA
GACACATTGGAATTTGCCAGAGCCTGTTTCCATCTTCTTTGGACGAGAAA
GTTTGATTGAATCCATTcatttgaaacttcaaaaaaatcaagcaATTGCT
TTGAGTGAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCAAAGTTTCT
TCAAATGCACAAAGATGAATATCAGAAGATATTTTGGATTTCTGCTGTCA
TCCTCAAGAGATCTTTGAACGAGATTTTGTGTGCATTTGGTTGTAAACAA
CTAATACCTGATGAACCTTCGATGGAAACTCTGACTTTCATTTTCCTCTC
TAAGTTTTGTGAAGGCTCCAAAGGATCGCTGGTTGTTTTGGATGACGTCA
CTGAGGTCACAAAAGACGTCACTTCATTGATTCGaaatgtgaaagaaaaa
atcagcTTATTGTTGACATCTCAATTGAGGGATTGGGAAGATTATGGTTT
GATTCAAATTGCTGTTCCATGTTTCCAAGATCAAGAATCCATTGGTTTCT
TACAGAATGAACTTACTACAGCCAACCATCAAGAAATCTCCATTTTAGCG
AATCGTTTACAATCATTACCTTTAGCCCTTCAGCAAGCCATTTGTTACAT
CAAAAAACACAAAGTTCCTCTACACAAATACATCGAACAATTTGAAGCAt
gcagaaaaagtgttttgggAATGAAAATCAATTCCTTTACTGAATATGAC
AAAACATTGTTGACAGTTTGGGATATGGCTTTTGCGAAGATTCGGGTCGA
ATCAAATAATGCTCTTTTGATCTTGGGAATGATGGCTTTAATTGACaatc
gaaaaatcaataaaaagacTTTCAGTTATTTTGATAAAGTTGACGAGTTT
GAATTAAATGAAATCATCAATCTGCTTTGTCAATATTCATTGGTCAACGA
GCGAAACGAATGTTTAGAAATTCACAGTCTTGTGCAAAAAGTTATCCGAT
ATCGTATCGAACAAAAACAATATGTTGAGGATGAATGTCCGTTGACACTG
CTTGAAGATGTTCTTTTGAAAATCGAGGTTTCTATTAAAGATTTGTTTGC
AAATGATGACTATGAGGATTTATGGTACATTCATGTTTTTCGTTTGATCA
TGAGTGGTGGATTCAAAACTATCAACTTTAATGTTTCCCGGGTGTTAACT
ATCGCCGCAGGCAGAATGGAGATGGAAAACTTATACCGAATTTCTGAACT
ATTTTTAAAAGTTGTTTTAAAACAATATAGGTTATGTCAAGATGTGAAAA
CTTTTGATATGCTGTTGGTTGTTCATCGTCGTTTCATATACGCGTCAAGT
CAATTAGGTTTACTTAATTTGAATGagatttttgcttttgaagAAGAGTT
TTCCTCAGAGCTTGAAGAACATTCTGTATTCGTTTACCGTTGGAAGCTAG
AGCAAGCTGAGGCATATAATATACATGGAAGAGTGTCGTTAGGCGAAGAT
ATagttcaaaatttatttaatgAACTAGTCAAGAAGAAAGGATTTGATGA
TGTTAAATTAAGATTGGCGAGTTTTCTCACCGTAAGGGATGTTGAAGTTT
TGTTGAATTCAGTTGACACAAATAATCTCAGTGACGTTAACTTTCTGATG
TATTATTATGCAAAATGTTCTTTATACATCGAGAACGGTTGCTTTCATTT
GGCTGAACAAACCATGAAGAATTGGAAAGAACATTTACACAGAAAACAAT
TTTCTCGATCGTCTCAGTTTAACTTCACAAAAAAGAATTGCTTTTTACTT
TACAAGAAAGGAAATTACAACGAAGCATTACTTGTATGCGATGAACTTAA
ACGAGACATTGTCTTTACTAATGCAGATGTTTACATTTCGGAAGCCttga
ttttgatcaaattaGGAAAGTTCAACGACGCAGAAGTGTTACTTGATAAC
CTTAATAAACGCAATAATAATGGATCCATCATTAGAATCAGTTCATACCT
GAAATTTCGAAAGCACGACTTTGAGGCAGTAGAAAATCTCCTCACTATTG
TGGAAGATGAGGatttgttaaatattttgtttttggtaAAGGAATATGCG
AAACTGCATCGACAACTCGAAAATAATAAATCGAGAGAAATGGTTGAACG
ATGtttgcaaatgaaaaaaattgtaaatgaaTTATTTCAAGTACAATTGG
ATATGATTTATCTTTGAAATCTTATTATATGGAATTATGATTAGAATTGC
ATCTTTGGGTATTACTCCAACTTTTGGCTAAACTGATTAGTTTTTCAAAT
GCCAGCAATGTAATTGTTGCATTGACTAGGCctgtaaaatcaaaatttct
ttttaattatgaAAATATTCTAAGGGATGGTTTCAGTGGGGACCTGATTC
CACCATTCGGTCAAATTTGtgtccaatttccgtcaaaccgtcaaGATCAA
GACCGAAATTCTGCCActgaaaatttcctttgaaattNAAGTTTTTTTTA
TCATGAAAATATTCGAGGGAgtggtttcagggggtacctgatTCCGCCAT
TCGGCAAATTTTTGGTTAATTTCCGC Run BLAST on NCBI transcript from alignment at scaffold_43:48649..52827- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065093 ID=TCONS_00065093|Name=TCONS_00065093|organism=Clytia hemisphaerica|type=transcript|length=4179bp|location=Sequence derived from alignment at scaffold_43:48649..52827- (Clytia hemisphaerica)
CGAAATTGACGTTGAAGGCTGACAAATGCCAAATTGATGGTAAAGTTATA
CCAGAAAAATTTGTTGTGTTTGTCAAATGTTTTTTGGACCTACCTCGGAG
GTCCTATAAATTAAATGTCCATTCGTTCGTTCGGTCGTGTGTTCGTTCGG
TCGTTCTCAGGATTGGCTCATTAGTTTTTTCTGATTTTTGGCACAATGAT
GCAAAGTGGCAATGCCCAAAAGTGAGCCCGATTTTCGAAATCAAATTTTT
TCCGGCCGAAAATGCCGGAAATATGCCAGAAAAACTGGGCCGAGTCCGAT
TTTTTTGTTAAATTTTTTTCGGAAATATGCCAGAAATCGCTGTTTTTCAG
GATTTTCATTGGACTTTTTCCTTATAATTGGTTGTTTTTTCATTCAAAAA
CATAATTATTAGCAATGCCCATTATCAAGCATGTTTCAATTTTTAATGAA
TTTGATTTTGGAAGCCGGAACTATTTAAAAATCGCTGGAACAACCTATTT
TCGCCGGAAAGACAGTATTTCTCGAATGAATTTCTCGAGTTGTACTTTAT
ATTTTTTATGAAATTTTGCACACTGANCCGGAAAGACAGTATTTCTTGAA
TGAATTTCTCGAGCTGTACTTTATATTTTTTTATGAAATTTTGCACACTG
ATGCAAAATGACAATACCTAAAATGTGACCGGAGCGTGATTTTCAAAAAC
CATTTTTTTCCGGCCGAAAATGCCGGAAATATGCCGGAAAAAGGGGTTTT
TTGACATTTTCTCGAATTTTCATCCTTGTTTTTTTTCTGATTTTTTGCAA
AAAGATGCGTATTTGCAATGCTCAAAACATGACTGCGTTCGATTTCTTGA
GAACAATTTTTGTCTTATGTCTTTGTTTTTTCACACATTATTTTTAAGAA
TGTCCACGATTTTTCAATGAAACTGATATTGGTACAGGAACTTTTAAAAA
TCGTCAGAACAGCCGAGAATCGCCGGATTTCTTGAATTTCTCAAGTTGTT
CTTGTATTATTCTGCATTTTCATACTTTTGTCGTCATTTTTCAATTGTCT
CATTACATCAAACAACAGGTAGGTCCATTCAGCATGTAGCTTGTTTCTCC
TTTTTTGAGGTGGTCCGCTAGCAACCTTTTTCATCAAAATAAAACTTTGG
TGTTATCAGATTTCAAATGTATCTAGTCGATGAAAAATGTTTCAAGTGTT
CCGAGACCTTTAAAAATTTCCTCTGTAATCTACACGTACGAAAGTTATTT
TTATTCTTTTAAAGGAATGTTGCTGAATAAAATGGCCTTTTCTGACCAGT
ATCATTTTTTTAACAGAATTGAGCAACAAAGTTGACCAGCTATCAATGGA
ATCAAAATCTGTAAAGGGTAAAGCTTTAGCTATGATTTTTATTTTTTCTA
TCCATGCTTTATTATTTTTTTTATTCTTTTAAAGGAATATTGCTGAATAA
AAAGGCCTTTTTTGACGAGTATCATTTTTTTAAACAGAATTGAGCAACAA
AGTTGACCAGCTATCAATGGAATCAAAATCCGTAAAGGGTAAAGCTTTAG
CTATGATTTTTATTTTAACTACCCATCTCTGCCTGAATTTATTCAAAGAA
ACTTTATCTTTAATTTGTTTACCTTCTTTTGTATTCCTTCTAGTTACAAC
AAAGACACATTGGAATTTGCCAGAGCCTGTTTCCATCTTCTTTGGACGAG
AAAGTTTGATTGAATCCATTCATTTGAAACTTCAAAAAAATCAAGCAATT
GCTTTGAGTGAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCAAAGTT
TCTTCAAATGCACAAAGATGAATATCAGAAGATATTTTGGATTTCTGCTG
TCATCCTCAAGAGATCTTTGAACGAGATTTTGTGTGCATTTGGTTGTAAA
CAACTAATACCTGATGAACCTTCGATGGAAACTCTGACTTTCATTTTCCT
CTCTAAGTTTTGTGAAGGCTCCAAAGGATCGCTGGTTGTTTTGGATGACG
TCACTGAGGTCACAAAAGACGTCACTTCATTGATTCGAAATGTGAAAGAA
AAAATCAGCTTATTGTTGACATCTCAATTGAGGGATTGGGAAGATTATGG
TTTGATTCAAATTGCTGTTCCATGTTTCCAAGATCAAGAATCCATTGGTT
TCTTACAGAATGAACTTACTACAGCCAACCATCAAGAAATCTCCATTTTA
GCGAATCGTTTACAATCATTACCTTTAGCCCTTCAGCAAGCCATTTGTTA
CATCAAAAAACACAAAGTTCCTCTACACAAATACATCGAACAATTTGAAG
CATGCAGAAAAAGTGTTTTGGGAATGAAAATCAATTCCTTTACTGAATAT
GACAAAACATTGTTGACAGTTTGGGATATGGCTTTTGCGAAGATTCGGGT
CGAATCAAATAATGCTCTTTTGATCTTGGGAATGATGGCTTTAATTGACA
ATCGAAAAATCAATAAAAAGACTTTCAGTTATTTTGATAAAGTTGACGAG
TTTGAATTAAATGAAATCATCAATCTGCTTTGTCAATATTCATTGGTCAA
CGAGCGAAACGAATGTTTAGAAATTCACAGTCTTGTGCAAAAAGTTATCC
GATATCGTATCGAACAAAAACAATATGTTGAGGATGAATGTCCGTTGACA
CTGCTTGAAGATGTTCTTTTGAAAATCGAGGTTTCTATTAAAGATTTGTT
TGCAAATGATGACTATGAGGATTTATGGTACATTCATGTTTTTCGTTTGA
TCATGAGTGGTGGATTCAAAACTATCAACTTTAATGTTTCCCGGGTGTTA
ACTATCGCCGCAGGCAGAATGGAGATGGAAAACTTATACCGAATTTCTGA
ACTATTTTTAAAAGTTGTTTTAAAACAATATAGGTTATGTCAAGATGTGA
AAACTTTTGATATGCTGTTGGTTGTTCATCGTCGTTTCATATACGCGTCA
AGTCAATTAGGTTTACTTAATTTGAATGAGATTTTTGCTTTTGAAGAAGA
GTTTTCCTCAGAGCTTGAAGAACATTCTGTATTCGTTTACCGTTGGAAGC
TAGAGCAAGCTGAGGCATATAATATACATGGAAGAGTGTCGTTAGGCGAA
GATATAGTTCAAAATTTATTTAATGAACTAGTCAAGAAGAAAGGATTTGA
TGATGTTAAATTAAGATTGGCGAGTTTTCTCACCGTAAGGGATGTTGAAG
TTTTGTTGAATTCAGTTGACACAAATAATCTCAGTGACGTTAACTTTCTG
ATGTATTATTATGCAAAATGTTCTTTATACATCGAGAACGGTTGCTTTCA
TTTGGCTGAACAAACCATGAAGAATTGGAAAGAACATTTACACAGAAAAC
AATTTTCTCGATCGTCTCAGTTTAACTTCACAAAAAAGAATTGCTTTTTA
CTTTACAAGAAAGGAAATTACAACGAAGCATTACTTGTATGCGATGAACT
TAAACGAGACATTGTCTTTACTAATGCAGATGTTTACATTTCGGAAGCCT
TGATTTTGATCAAATTAGGAAAGTTCAACGACGCAGAAGTGTTACTTGAT
AACCTTAATAAACGCAATAATAATGGATCCATCATTAGAATCAGTTCATA
CCTGAAATTTCGAAAGCACGACTTTGAGGCAGTAGAAAATCTCCTCACTA
TTGTGGAAGATGAGGATTTGTTAAATATTTTGTTTTTGGTAAAGGAATAT
GCGAAACTGCATCGACAACTCGAAAATAATAAATCGAGAGAAATGGTTGA
ACGATGTTTGCAAATGAAAAAAATTGTAAATGAATTATTTCAAGTACAAT
TGGATATGATTTATCTTTGAAATCTTATTATATGGAATTATGATTAGAAT
TGCATCTTTGGGTATTACTCCAACTTTTGGCTAAACTGATTAGTTTTTCA
AATGCCAGCAATGTAATTGTTGCATTGACTAGGCCTGTAAAATCAAAATT
TCTTTTTAATTATGAAAATATTCTAAGGGATGGTTTCAGTGGGGACCTGA
TTCCACCATTCGGTCAAATTTGTGTCCAATTTCCGTCAAACCGTCAAGAT
CAAGACCGAAATTCTGCCACTGAAAATTTCCTTTGAAATTNAAGTTTTTT
TTATCATGAAAATATTCGAGGGAGTGGTTTCAGGGGGTACCTGATTCCGC
CATTCGGCAAATTTTTGGTTAATTTCCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065093-exon-scaffold_43-1575043694:52789..52827 | TCONS_00065093-exon-scaffold_43-1575043694:52789..52827 | Clytia hemisphaerica | exon |
| TCONS_00065093-exon-scaffold_43-1575043694:51290..51340 | TCONS_00065093-exon-scaffold_43-1575043694:51290..51340 | Clytia hemisphaerica | exon |
| TCONS_00065093-exon-scaffold_43-1575043694:48649..51184 | TCONS_00065093-exon-scaffold_43-1575043694:48649..51184 | Clytia hemisphaerica | exon |
| TCONS_00065093-exon-scaffold_43-1510915933:52789..52827 | TCONS_00065093-exon-scaffold_43-1510915933:52789..52827 | Clytia hemisphaerica | exon |
| TCONS_00065093-exon-scaffold_43-1510915933:51290..51340 | TCONS_00065093-exon-scaffold_43-1510915933:51290..51340 | Clytia hemisphaerica | exon |
| TCONS_00065093-exon-scaffold_43-1510915933:48649..51184 | TCONS_00065093-exon-scaffold_43-1510915933:48649..51184 | Clytia hemisphaerica | exon |
| TCONS_00065093-exon-scaffold_43-1491911889:52789..52827 | TCONS_00065093-exon-scaffold_43-1491911889:52789..52827 | Clytia hemisphaerica | exon |
| TCONS_00065093-exon-scaffold_43-1491911889:51290..51340 | TCONS_00065093-exon-scaffold_43-1491911889:51290..51340 | Clytia hemisphaerica | exon |
| TCONS_00065093-exon-scaffold_43-1491911889:48649..51184 | TCONS_00065093-exon-scaffold_43-1491911889:48649..51184 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_43 | supercontig | scaffold_43:48649..52827 - |
Blast
The following BLAST results are available for this feature:
|
