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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065100 ID=TCONS_00065100|Name=TCONS_00065100|organism=Clytia hemisphaerica|type=transcript|length=1208bpRun BLAST on NCBI protein sequence of TCONS_00065100-protein >TCONS_00065100-protein ID=TCONS_00065100-protein|Name=TCONS_00065100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp MIICKTNPQRQLRYLLQALPCTHSNNKRRNRRAFSLVVETPTNIITQSCDRun BLAST on NCBI transcript from alignment at scaffold_430:22817..36347- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065100 ID=TCONS_00065100|Name=TCONS_00065100|organism=Clytia hemisphaerica|type=transcript|length=13531bp|location=Sequence derived from alignment at scaffold_430:22817..36347- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_430:22817..36347- >TCONS_00065100 ID=TCONS_00065100|Name=TCONS_00065100|organism=Clytia hemisphaerica|type=CDS|length=10314bp|location=Sequence derived from alignment at scaffold_430:22817..36347- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065100 vs. Swiss-Prot (Human)
Match: MAP12 (Methionine aminopeptidase 1D, mitochondrial OS=Homo sapiens GN=METAP1D PE=1 SV=1) HSP 1 Score: 269.24 bits (687), Expect = 2.978e-86 Identity = 137/284 (48.24%), Postives = 184/284 (64.79%), Query Frame = 2
Query: 194 ITQSCDVPIHITKPHYAQNDHPQGFLSSLFQSRSKNQANGFVKNEALVSKIKQACRVGRRVLNHVGQAVRPGVSTDDLDFVAHHLICEEDAYPSPLRYQFFPKSICTSVNNVVVHGIPDSRKLEEGDIINIDISVFLDGVHGDLSETYLVGDVEKKGKKLVEVTKQCLHEAISICGPGQLLQKIGQTISSIAHAHGYTVCPHYVGHGIGEEFHEMPQILHHDNDYPGNMVPGMVFTIEPVLCEGGTDILHWRDGWTVVTKDGKRAAQFEHTIHITDSGFEVLTK 1045
++ + VP HI KP Y G + S VKNE + + QAC++ R VL G++++ ++T+++D + H I +AYPSPL Y FPKS+CTSVNNV+ HGIPDSR L++GDIINID++V+ +G HGD SET+LVG+V++ GKKLVEV ++C EAI+ C G IG TIS I H +G+ VCPH+VGHGIG FH P+I HH ND M GM FTIEP++ EG + D WTVV+ D +R+AQFEHT+ IT G ++LTK
Sbjct: 58 VSSAHPVPKHIKKPDYVTT----GIVPDWGDSIE-------VKNEDQIQGLHQACQLARHVLLLAGKSLKVDMTTEEIDALVHREIISHNAYPSPLGYGGFPKSVCTSVNNVLCHGIPDSRPLQDGDIINIDVTVYYNGYHGDTSETFLVGNVDECGKKLVEVARRCRDEAIAACRAGAPFSVIGNTISHITHQNGFQVCPHFVGHGIGSYFHGHPEIWHHANDSDLPMEEGMAFTIEPIITEGSPEFKVLEDAWTVVSLDNQRSAQFEHTVLITSRGAQILTK 330 The following BLAST results are available for this feature:
BLAST of TCONS_00065100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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