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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065116 ID=TCONS_00065116|Name=TCONS_00065116|organism=Clytia hemisphaerica|type=transcript|length=3487bpRun BLAST on NCBI protein sequence of TCONS_00065116-protein >TCONS_00065116-protein ID=TCONS_00065116-protein|Name=TCONS_00065116-protein|organism=Clytia hemisphaerica|type=polypeptide|length=962bp DYPYEPSLNLQRKFQPPSSSVNQNNTYEQADPAAMRDFVSAMETKKQQQNRun BLAST on NCBI transcript from alignment at scaffold_430:85006..101014- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065116 ID=TCONS_00065116|Name=TCONS_00065116|organism=Clytia hemisphaerica|type=transcript|length=16009bp|location=Sequence derived from alignment at scaffold_430:85006..101014- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_430:85006..101014- >TCONS_00065116 ID=TCONS_00065116|Name=TCONS_00065116|organism=Clytia hemisphaerica|type=CDS|length=40446bp|location=Sequence derived from alignment at scaffold_430:85006..101014- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065116 vs. Swiss-Prot (Human)
Match: NGEF (Ephexin-1 OS=Homo sapiens GN=NGEF PE=1 SV=2) HSP 1 Score: 327.02 bits (837), Expect = 9.175e-97 Identity = 194/475 (40.84%), Postives = 278/475 (58.53%), Query Frame = 3
Query: 1422 LWSELPSVRNSGFLDNISPDDRKRQEAMFEVITSEASYLKSLDILISHFMLNRDLLPNPNHPSHEGDELPQLLDRQQYHFLFSGLSAIKGVSERFLKDLRKRQQXXXXXXXXXXXXXXYASNHLTCYVKYCSNQVFQDRTFQHLLDTSPAFVNKLSELEKDPITQGLSLQSFLTLPMQRITRLPLLVDAICRRCTPASEEFEKTDTALKALNAVVKESNEGARQMVRTEEMYFIQKNLIWKTKPIPLISTSRWLVKKGDLMCLHEEGRFSQFKNQLRQIFKGKFKPIYIFLFTDIVLVTKMKGEDKYKVIDVCQRSSLRCEIMKNIPDPEPPKMGTLATMNVNPLKYAFTLILLENANGKTVDYHFFLSTETDKTRWMEALSPPKSNTPTVEGESIYEEWDCPQVQAIHQYVAQQPDELTLMEGDVISVLRKLPDGWAEGMLLRDDTRGWFPINHTDEIDSRHMRAKNLMQRYRL 2846
LW +LP +R+SG L+ + P++ K QEAMFE++TSEASY KSL++L+SHFM E + + ++L + H LFS + + VSERFL +L R + +I++ + DI+ YA++H + Y+ Y SNQ +Q+RT++ LL AF +++LE DP +GL SFL LP QRITRL LLV I +R SE A K L VVK NEG R+M RTE+M IQK + +K K +P+IS SRWL+K+G+L + S K K F IY+FLF D++++ + DKY+V D R LR E +++ + TLA + F L LLENA+ + Y S++++ RWM +L+P + T V S DCPQVQ +H YVAQQPDELTL D++++L K DGW G L D RGWFP + T+EI + +R++NL + +R+
Sbjct: 251 LWQDLPEIRSSGVLEILQPEEIKLQEAMFELVTSEASYYKSLNLLVSHFM--------------ENERIRKILHPSEAHILFSNVLDVLAVSERFLLELEHRMEENIVISDVCDIVYRYAADHFSVYITYVSNQTYQERTYKQLLQEKAAFRELIAQLELDPKCRGLPFSSFLILPFQRITRLKLLVQNILKRVEERSERECTALDAHKELEMVVKACNEGVRKMSRTEQMISIQKKMEFKIKSVPIISHSRWLLKQGELQ------QMSGPKTSRTLRTKKLFHEIYLFLFNDLLVICRQIPGDKYQVFDSAPRGLLRVEELED-------QGQTLANV--------FILRLLENADDREATYMLKASSQSEMKRWMTSLAPNR-RTKFVSFTSRL--LDCPQVQCVHPYVAQQPDELTLELADILNILDKTDDGWIFGERLHDQERGWFPSSMTEEILNPKIRSQNLKECFRV 687 The following BLAST results are available for this feature:
BLAST of TCONS_00065116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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