TCONS_00065132 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065132
Unique NameTCONS_00065132
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length971

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065132 ID=TCONS_00065132|Name=TCONS_00065132|organism=Clytia hemisphaerica|type=transcript|length=971bp
ACTTTTGAAACATGAGCAGCCATGTGTCCTACATACAGGTGACAGGGAGA
GATTCATCCTCAAAATTTGGCTTTGCTTCAAAGTTTTACTAGCCATATAT
ATTTCCTACTGTCTGGATGTCTGTCTTATTTGAATGGTTTAACTCTTTAA
ATAATACacaaagaaataagaaaataacataagaaattgattaaagttta
tgaaaatgATTGACTTCATTTGTTGTTTCTATTTATTATCAACACTTGCC
TTTAATTCATGGACATATACCTAAACTTCCACttacattttcatttgtca
GATATTTTTATGATCAGGCAgacaaattcaagaaaattggGATACAAAAA
CTAATATTTTGTAGTATGAGTGCATAGTGCTTTGTGACTTGGTTTATTGT
ACACTCAATGATCAATATATTTCATAtctaaaaaatttgggttggGAGAC
GAGATACATGGTGACGACGCGCTCCTCGAACTAgcttattttttccttat
attttttcaaattttcttaacaatttatatatttttaaatttagtcagga
ataatttttccatttttattagaGATTAGGGATTCCAGAGTTGTTTGCGA
CTTGCCTGTATCTTGtgagtttttcaaaaacaaaattgtctCTCGGGATT
GATATGGAGCGACGCGCTCCTTCTTCCAAGGCGTTTGCGAACTACAATAC
TTTCCCTTTGAGGTGATTTATGCTAAGgcataaataagcaaaaaagattG
TAACCAAATCAATACCAAGCTACAGTTTATTTATATACCAAAGACATGGA
CTTAGATAACTTATGATGAGAAATAATTTGAGaatgtttgtctttgtttt
tctcttcatctgcctgtctgtctgtctgtaactTCAAAGATGTTcggttt
ttttgggtgaaaccTGGGGTAGTTTTTGTTTTAACCAATAGGTTTACAGT
TTCTCAGGCTTTGTCATTTCN
Run BLAST on NCBI

transcript from alignment at scaffold_431:33461..34923-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065132 ID=TCONS_00065132|Name=TCONS_00065132|organism=Clytia hemisphaerica|type=transcript|length=1463bp|location=Sequence derived from alignment at scaffold_431:33461..34923- (Clytia hemisphaerica)
ACTTTTGAAACATGAGCAGCCATGTGTCCTACATACAGGTGACAGGGAGA
GATTCATCCTCAAAATTTGGCTTTGCTTCAAAGTTTTACTAGCCATATAT
ATTTCCTACTGTCTGGATGTCTGTCTTATTTGAATGGTTTAACTCTTTAA
ATAATACACAAAGAAATAAGAAAATAACATAAGAAATTGATTAAAGTTTA
TGAAAATGATTGACTTCATTTGTTGTTTCTATTTATTATCAACACTTGCC
TTTAATTCATGGACATATACCTAAACTTCCACTTACATTTTCATTTGTCA
GATATTTTTATGATCAGGCAGACAAATTCAAGAAAATTGGGATACAAAAA
CTAATATTTTGTAGTATGAGTGCATAGTGCTTTGTGACTTGGTTTATTGT
ACACTCAATGATCAATATATTTCATATCTAAAAAATTTGGGTTGGGAGAC
GAGATACATGGTGACGACGCGCCCCTCGAACTAGCTTATTTTTTCTATTT
ATTTTTTCATATTTTCATAGATTCCAGAGTTGTTTGCGACTTGCCTGTAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAAGATACA
TGGTGACGACGCGCTCCTCGAACTAGCTTATTTTTTCCTTATATTTTTTC
AAATTTTCTTAACAATTTATATATTTTTAAATTTAGTCAGGAATAATTTT
TCCATTTTTATTAGAGATTAGGGATTCCAGAGTTGTTTGCGACTTGCCTG
TATCTTGTGAGTTTTTCAAAAACAAAATTGTCTCTCGGGATTGATATGGA
GCGACGCGCTCCTTCTTCCAAGGCGTTTGCGAACTACAATACTTTCCCTT
TGAGGTGATTTATGCTAAGGCATAAATAAGCAAAAAAGATTGTAACCAAA
TCAATACCAAGCTACAGTTTATTTATATACCAAAGACATGGACTTAGATA
ACTTATGATGAGAAATAATTTGAGAATGTTTGTCTTTGTTTTTCTCTTCA
TCTGCCTGTCTGTCTGTCTGTAACTTCAAAGATGTTCGGTTTTTTTGGGT
GAAACCTGGGGTAGTTTTTGTTTTAACCAATAGGTTTACAGTTTCTCAGG
CTTTGTCATTTCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040837XLOC_040837Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065132-exon-scaffold_431-1575043694:34467..34923TCONS_00065132-exon-scaffold_431-1575043694:34467..34923Clytia hemisphaericaexon
TCONS_00065132-exon-scaffold_431-1575043694:33461..33974TCONS_00065132-exon-scaffold_431-1575043694:33461..33974Clytia hemisphaericaexon
TCONS_00065132-exon-scaffold_431-1510915933:34467..34923TCONS_00065132-exon-scaffold_431-1510915933:34467..34923Clytia hemisphaericaexon
TCONS_00065132-exon-scaffold_431-1510915933:33461..33974TCONS_00065132-exon-scaffold_431-1510915933:33461..33974Clytia hemisphaericaexon
TCONS_00065132-exon-scaffold_431-1491911889:34467..34923TCONS_00065132-exon-scaffold_431-1491911889:34467..34923Clytia hemisphaericaexon
TCONS_00065132-exon-scaffold_431-1491911889:33461..33974TCONS_00065132-exon-scaffold_431-1491911889:33461..33974Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_431supercontigscaffold_431:33461..34923 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.858551	1.27457	0.61243	0.644024	1.34802	0.983137	0.949722	3.20998	0.98198	1.88956	3.19505	1.38812	2.09196	1.73663	2.49841	2.03445	2.0477	3.35733	0.687389	1.56577	2.11598	1.97382	1.89515	1.77705	0.786472	1.97201	3.3179	1.10898	2.64353	1.78887
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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