TCONS_00065152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065152
Unique NameTCONS_00065152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065152 ID=TCONS_00065152|Name=TCONS_00065152|organism=Clytia hemisphaerica|type=transcript|length=2293bp
ttgatttttttttcaaaatcttttcaaaccaaatcgattttatttttaat
ttcaaaataattttcaaatcaaatcgaatttcaatctgaaaataaaataa
aattgattttttggccATTGCTCCAAACCACTATACCTCAAAACAACCTT
TGCTGAACGCTCGGAAAAGGCAAGACTGGCAACTGGCATTCCTTTTGGTT
ATGCACGCTGCTGTTTGGTTTTAGTCACAAAAGaTGGCTACTAACAATGA
CAGAAAACTTTGGGAAGAACGtgcacaaaaactgaaaaggaAGAGAATGG
GTCAGGACACAGTGAAGGGTGATAAAGCTGGTGCTGTTGGTTCTCATATT
TTAGCCGAGAGAGAAATGACTGTTCAACGTCTTTCTAGTGTTGCTACTGG
GAAAGCAAtgaaattcaataaaatggggCCTCAGGAATTCGTGGCCTATC
CATTTGATGAATTGACAATCGAAAATTTGATTCAAGCGTGCAGTGCACAT
TTTCGAGATGAATTGCTTGACAATCAAAGGTGTGATATTTTGCAATCACA
AGATGGTCCTTCTTGTTCTAAACTTTCACACATTAAAAGTTATAAGGTGA
TTTATGTTCGTTTAATTACAAATGTGAATCAAGCATCCATTTCCATAAGA
AAGTATTTCGATAAGATGAAGATGCCACCTCGCAGCCCTTTATCCTCAAT
GAACGTTTTAAACTCTTCTGCAGTATCAACACCAAGCAAATCCATTAAGC
TTCAAATACCTCAAAAGCAAAAGCCTGTCCAAACTACTCAATATCCAAAA
AGCTTGTCCATCTCAAACATGCTTCAATTTGGAACAGCAATAACGAAAAT
GCAAAATCCACCCGTGGAAATTGAGCTCCAAGAAATTGACGTTTCAGCTA
TGAAATGGAGCTATCCaacatcaaaaagattttctatcTCGGAGACTCCT
CTTACCAAAGGTGGATTTAGGGAAGTGTCTGAAGCCATCGATGTGGacac
aaaaaagaaatttgttgtGAAAACCTTCCTTCCAGAAGTTTTCAAAGTAA
TGGAAGAAGTGAATACTGTTATTCCACTTAATAAAGAAAGTGAGGAGTCT
CTATCAAAAAAGGCCATACAAGCCCATGCCCTAGCTAAAAATGTCACCga
ttcattgaaaaaattatgCTTCAATAATAACTTAATGGACGATTTTGGGG
AGTTTTTTACATATAATAAAGCGTACTTAGGATCAAAGGTGATGCACGgt
ggagagaaaaaaattgtcatgGTGGAAGAGTACGTTGATGGAGAATTTAT
TAAATTTATCAACAATGATGGCAAAATCATTCATGGTCAGCCAAAAGATC
TGGACCGTTTACTGAAAGCCCAATGTCTTGCCCACTACTCACTCGTGAAA
TCTGGGCAAAGGTTTATGATTGTTGACATCCAAGGTTCAGGTTATACACT
TTACGATCCTGAAATTGCTACGACTGGTGATGCTATAGAAAATGAGCGTT
TAAACTTTAATCTTGGCAATTTGTCCAAAGCTGCAATTGATTTGTTTATC
ATTGCTCATGTTTGCAATAGATTCTGTAAACTTGTTGGGCTGGAGCAACC
TCCTTCCTCAAAGATCGACTTGTCAAAATAAACTACACAACTGTTTGAAG
CAATTTCTTACGTTTATATTTTACtcgattttatttttgttctagGTTAT
ATATTAAAACTTATTGTTTCactatgaaaataatatattaaaataataat
tcCTATTTACaaatatataaacaaacaaTTCATGCGTAAATCACAAATAA
TAGTTAAACCCGAGAAAGATAGTAGGGGAGTACAAAGATGAAagacaaaa
atgggtgctgggtatgtacgggtcattttttaaactttaaggATTACAGA
AATCAGAACAATTTAAAGTTGTCCCTTCAAGGATTGGAAAATTCATGCTC
TTTGAGTTTCTAGAGAAAGATTGGTAGATAGTCTTTCTTAGGAGGAAAAT
TATCGAAAAtcgaagaacatttttaaaaatgtctctccaagggtcacttt
ttcactgaAATTAGGTCTTTCTAAGAGTTGTCCCTCCCGCACATACCCGT
TATCtccaaacctagtacccccgaGGCCAGCACTCCAAAACGACCTAGAC
ATTTTCTTGGTTTTCTGTGTCGGCGAGAACCAAAAGCTTTTTTGGGGCCC
TAGTTaatattttaaaaagctttGTGTATAAATACTAAAGAATAtagata
attttttataatattgTCGAATGAAGTTAATGTGTTTTATTTC
Run BLAST on NCBI

transcript from alignment at scaffold_433:62979..68136+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065152 ID=TCONS_00065152|Name=TCONS_00065152|organism=Clytia hemisphaerica|type=transcript|length=5158bp|location=Sequence derived from alignment at scaffold_433:62979..68136+ (Clytia hemisphaerica)
ttgatttttttttcaaaatcttttcaaaccaaatcgattttatttttaat ttcaaaataattttcaaatcaaatcgaatttcaatctgaaaataaaataa aattgattttttggccATTGCTCCAAACCACTATACCTCAAAACAACCTT TGCTGAACGCTCGGAAAAGGCAAGACTGGCAACTGGCATTCCTTTTGGTT ATGCACGCTGCTGTTTGGTTTTAGTCACAAAAGGTAAGCTCACATGAATT CTGTAAGATTCGTTTATAGTATAGTATATACCTTTTTTCTTGACTACTAG GCCTGGGGGTACTAGGTTGGTTTGCTATTAACAAAACCAACCCTGAGCTG TAGTTTTTGGTATACCTGAGAGCATGAAggtaataagaaaataaagaatt cTAATTTTCTTATTACCTTCATGCTGAGAGGGAAAATTTATGGTTTTCGT GGGGTTTTGGGGCCCTTTATTTACTACAGGACAGAGTGGGTTGGTTTTTG TAACCCTTGACTGCTCTTGGAGAGATATTTTCGAGGTGTGTgcgtgaaaa aggtacccttaactTGGCCATCAGTCAGCATCACTTGACTTGCACATACC AACATACATACTACCCATACACACCCCCAGATTATTTTAGGCTATTAAAA AGGAAGGGATCTGCAACACAATCCATCAGTCCCATCAAGATGATATAATT TTTTCTCAAGGCATCCTCACTCCATGACAGACCACCATAGAATGAATGTT CAATTCACACAGCTTCCCTTTATAAACTTTCACCTGGACTCTCCTCCACA GAGTCTAACTacactttttcaaaaactaacCATAGATTTGAAATCAAACC TTCTTTGTATGAAAGCATACCTAATAAATTCTCAATagtataaaaattta aaaaattgaaccTGAGAATTAATCAAATTATTAATTAAAATTGATCACCC TCAGGGATGGAGCGCACTTTGAAATAAAAGagagttcattctatggtggt cTATCATGGAGTGAGGAtgtctaaaattatttttggtacATTTCCTCCTC AAACCTTCCCCTTTCAAAATACCAAAAGGATTTGTCAACATGCAAGCTTT AAATGATCCAACTAGACTATAAATTTTGAACTTTAGAGGCCTGCCGCACC GCACCTTCCATGACGGACGCGTGGCGTCGACCGTTCCGGCATATAAATAT GAAAGGCAAAATATGGTTTGAAACTGATAATGCCTGAAATAGTAAAAtgc tcaggtaagttatggcatgtccaaaaaactgaaaaattaccataattttt ggagggcattagccggcagaatctgaccaaacaaatgactcattatgaag ggtactatgataaAGTTTCTCAGacgatgtgtaacctaattgtttggcgc tcattttcgcgaaaaacgcAAATATTCCATTATTACATACgtcataattg atgacgtcataaaaattgaaaattgaatttctcgagaATGGTTTATCCAT AATTCACTccaaattttaaacaaagataGGTCTTGGTAAACTCCatcttt taacgaaaaaattttttaaaaattttgatgactttgatgacgtcagcaaa aataagcagaattcgaaaattgcaaatttttgatgaggtcatcaaaattt tgaaaaatttttaacgtTAAAAGATGGAGTTTACCAAGACCTATCTTTGT TTAAATTTTGGAGtgaattggataaaccattctcgagaaattcaattttt atgacgtcatcaattatgacGTAATAATGGAAAATTTgcgtttttcgcga aaataagcgccaaaacaattaggtaacacatCCTCTGAGAAACTttatca tagtacccttcataaTCAGTCATTTAAGTTTGGTCAGATTATGCCGGCTA ATGCCCTCCAAAAATTATGGCAATTTttggacatgccataacttacccga gtgtTATGTTACAATCAATGAATAAGAGTAATAAATGTACAACTATCACT CAAAACTGGTGCTAAGAACCCCACATAACCCAAGATAAAAAACACGGTTC AGCACGGTTCTGCGAAAAGCAgcaaaaaatacctcaaaaaCCCTTCAAAA AGCCCCTTAAAAAGACCTGTTTCTCACTTCCCataacaaaaatcttttaa aaatacaTCATAAAGATGTTCAAATACACTCTAGGtttgaaaaatataac attATAGCACTCGAAATTCATATTTTAGGTAATATCCATTAGAGGTCCTC CAGAACAGCTTTTCCAAACTTTTTAACTACTAAAACTCTTTTATGCAGCT TAGCTACCATCTTTAGGGGATTGTTTACAAAGTGGGGCCCAATATTTGGC TCCAATAAGCCGATTCTGGCGCTAATTGGCCGTtgtaaccattgagtttc aagcccgaagggctagaggtcaatctctaacctttctcaggcaagaaaaa ttgaagccttaaaatatgcgccgtatttttgatgacggattgaatctagc aattcctttgttttcgagtgatatatttttcgaaattaagcggtaaattt tagtctcaatctgtcatttgtgtaaaaaccaggcgggtcgctcaaggccg cgcaactttggtaggatttgttggcttcaaatcctaccaaagagattgat ttctagcccttcgggcttataattCATTGGTTGTAACTACCGAAATCTAT TTTCGACATCGAAAATTCAATTGCAAAAACATTATGTTTTGGCAATCCGA AATCGAATCCGATTaccccgattttcggaaaaagtaACCCGATTCggaaa attcaacctttccttCAACCTTTGCcacaaaaatgaagtttatatctGCA ACATACCCAAAGATATAGCCAATTTAATATGGTAACCAGTTTTGCGTAGA TCTATGGCATCCGCCAGGTAGACTTGCGTAGATCTACGGCATCCGCCAGG TAGACTTGCATAGATCTACGGCATCCGCCGCCTAAAGTTAAAGTTAAATC GGAATTCATAAacattaaaaatggtagactttgTATGGTGTCGCNGTAAT TGTCGACTTATATATCTAAAAATTTCCcccttgttttttcttttgcagaT GGCTACTAACAATGACAGAAAACTTTGGGAAGAACGtgcacaaaaactga aaaggaAGAGAATGGGTCAGGACACAGTGAAGGGTGATAAAGCTGGTGCT GTTGGTTCTCATATTTTAGCCGAGAGAGAAATGACTGTTCAACGTCTTTC TAGTGTTGCTACTGGGAAAGCAAtgaaattcaataaaatggggCCTCAGG AATTCGTGGCCTATCCATTTGATGAATTGACAATCGAAAATTTGATTCAA GCGTGCAGTGCACATTTTCGAGATGAATTGCTTGACAATCAAAGGTGTGA TATTTTGCAATCACAAGATGGTCCTTCTTGTTCTAAACTTTCACACATTA AAAGTTATAAGGTGATTTATGTTCGTTTAATTACAAATGTGAATCAAGCA TCCATTTCCATAAGAAAGTATTTCGATAAGATGAAGATGCCACCTCGCAG CCCTTTATCCTCAATGAACGTTTTAAACTCTTCTGCAGTATCAACACCAA GCAAATCCATTAAGCTTCAAATACCTCAAAAGCAAAAGCCTGTCCAAACT ACTCAATATCCAAAAAGCTTGTCCATCTCAAACATGCTTCAATTTGGAAC AGCAATAACGAAAATGCAAAATCCACCCGTGGAAATTGAGCTCCAAGAAA TTGACGTTTCAGCTATGAAATGGAGCTATCCaacatcaaaaagattttct atcTCGGAGACTCCTCTTACCAAAGGTGGATTTAGGGAAGTGTCTGAAGC CATCGATGTGGacacaaaaaagaaatttgttgtGAAAACCTTCCTTCCAG AAGTTTTCAAAGTAATGGAAGAAGTGAATACTGTTATTCCACTTAATAAA GAAAGTGAGGAGTCTCTATCAAAAAAGGCCATACAAGCCCATGCCCTAGC TAAAAATGTCACCgattcattgaaaaaattatgCTTCAATAATAACTTAA TGGACGATTTTGGGGAGTTTTTTACATATAATAAAGCGTACTTAGGATCA AAGGTGATGCACGgtggagagaaaaaaattgtcatgGTGGAAGAGTACGT TGATGGAGAATTTATTAAATTTATCAACAATGATGGCAAAATCATTCATG GTCAGCCAAAAGATCTGGACCGTTTACTGAAAGCCCAATGTCTTGCCCAC TACTCACTCGTGAAATCTGGGCAAAGGTTTATGATTGTTGACATCCAAGG TTCAGGTTATACACTTTACGATCCTGAAATTGCTACGACTGGTGATGCTA TAGAAAATGAGCGTTTAAACTTTAATCTTGGCAATTTGTCCAAAGCTGCA ATTGATTTGTTTATCATTGCTCATGTTTGCAATAGATTCTGTAAACTTGT TGGGCTGGAGCAACCTCCTTCCTCAAAGATCGACTTGTCAAAATAAACTA CACAACTGTTTGAAGCAATTTCTTACGTTTATATTTTACtcgattttatt tttgttctagGTTATATATTAAAACTTATTGTTTCactatgaaaataata tattaaaataataattcCTATTTACaaatatataaacaaacaaTTCATGC GTAAATCACAAATAATAGTTAAACCCGAGAAAGATAGTAGGGGAGTACAA AGATGAAagacaaaaatgggtgctgggtatgtacgggtcattttttaaac tttaaggATTACAGAAATCAGAACAATTTAAAGTTGTCCCTTCAAGGATT GGAAAATTCATGCTCTTTGAGTTTCTAGAGAAAGATTGGTAGATAGTCTT TCTTAGGAGGAAAATTATCGAAAAtcgaagaacatttttaaaaatgtctc tccaagggtcactttttcactgaAATTAGGTCTTTCTAAGAGTTGTCCCT CCCGCACATACCCGTTATCtccaaacctagtacccccgaGGCCAGCACTC CAAAACGACCTAGACATTTTCTTGGTTTTCTGTGTCGGCGAGAACCAAAA GCTTTTTTGGGGCCCTAGTTaatattttaaaaagctttGTGTATAAATAC TAAAGAATAtagataattttttataatattgTCGAATGAAGTTAATGTGT TTTATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040857XLOC_040857Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065152-exon-scaffold_433-1491911889:62979..63211TCONS_00065152-exon-scaffold_433-1491911889:62979..63211Clytia hemisphaericaexon
TCONS_00065152-exon-scaffold_433-1510915933:62979..63211TCONS_00065152-exon-scaffold_433-1510915933:62979..63211Clytia hemisphaericaexon
TCONS_00065152-exon-scaffold_433-1575043694:62979..63211TCONS_00065152-exon-scaffold_433-1575043694:62979..63211Clytia hemisphaericaexon
TCONS_00065152-exon-scaffold_433-1491911889:66077..68136TCONS_00065152-exon-scaffold_433-1491911889:66077..68136Clytia hemisphaericaexon
TCONS_00065152-exon-scaffold_433-1510915933:66077..68136TCONS_00065152-exon-scaffold_433-1510915933:66077..68136Clytia hemisphaericaexon
TCONS_00065152-exon-scaffold_433-1575043694:66077..68136TCONS_00065152-exon-scaffold_433-1575043694:66077..68136Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:62979..68136 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (2.54241 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.65684e-08 0.850989 0 0.104591 1.38307 2.54241 0.98318 2.18711 0.301984 0.398051 0.00468226 0.835333 0.0176219 0.0961871 0.075627 0.0336526 0.464581 0.114313 0.608475 0.463822 0.519726 0.552733 0.754223 1.58032 0.603746 0.270522 0 0.131567 0.0365185 0.0603582
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600180020002200Sequence
Match NameE-valueIdentityDescription
back to top