TCONS_00065170 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065170
Unique NameTCONS_00065170
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065170 ID=TCONS_00065170|Name=TCONS_00065170|organism=Clytia hemisphaerica|type=transcript|length=676bp
GTCTGTAGAAGGCATCAACCTTTTTggtaaaagaaaatcaaagagCAGTA
CAGGAGCTTCTCTGAAGAGGTACATCATAACAAAAAGGAAACATGATGAA
GGTAGCAAGTATTTTGGTCTTTTTGGCCATAGCAGCTTCGACTGAAGGCT
ATGGTGACCCAGTTTTGCTTCGAGTACGATCAGTGAACACTGTTTACACC
TCAACCTATCTCATCAAAAAGACACCATTGAACATGCATGCAGCAAAGGA
GGCTTGTGCTAAATGTGGAGGTTTCTTGGCAACTATTGATGATCTGCCAG
AACATCATTTCTTAGTCCATGAATTACAGAAACTTCACATCAAATCTGCT
TGGGTTGGATTAAACGACAAAGCTTACGAAAAAGTTTTCAGATGGGATGG
TTCAAATCTCCCAGGATTCAAAAAATGGTGTCCACACGAGCCAAACAATT
TTGGAAACGCTGAAGACTGTGTTGAATTGATCGCTGACAAGAAATGTTTG
AACGATCTTGGTTGCGCGCATGCGCGGccatacatttgtgaaatcaaCCA
AAGCAAAGTGACCAGTGACGTCACAGTCTAAAGAACCACAACATTTTGTC
ATCGTTTTtatttaatacattttttacattttttacacaaacatgcaata
aaatttttacaagGTATCAATAAAGG
Run BLAST on NCBI

protein sequence of TCONS_00065170-protein

>TCONS_00065170-protein ID=TCONS_00065170-protein|Name=TCONS_00065170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MMKVASILVFLAIAASTEGYGDPVLLRVRSVNTVYTSTYLIKKTPLNMHA
AKEACAKCGGFLATIDDLPEHHFLVHELQKLHIKSAWVGLNDKAYEKVFR
WDGSNLPGFKKWCPHEPNNFGNAEDCVELIADKKCLNDLGCAHARPYICE
INQSKVTSDVTV
Run BLAST on NCBI

transcript from alignment at scaffold_433:180467..182742+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065170 ID=TCONS_00065170|Name=TCONS_00065170|organism=Clytia hemisphaerica|type=transcript|length=2276bp|location=Sequence derived from alignment at scaffold_433:180467..182742+ (Clytia hemisphaerica)
GTCTGTAGAAGGCATCAACCTTTTTggtaaaagaaaatcaaagagCAGTA
CAGGAGCTTCTCTGAAGAGGTAAGAATTCTTTTTCTACTTTTACTAAGAG
CCCCTAAACCAGTTTGCGAAATTACGTGATCGGGCGGCTTTTTTGGCGTG
ATCCACAAAGCATGATGAGTGATTATTAGGAGAATTCTTTTCGGCTTGAT
GGTACAATGTTGGGGTAATGGCGCAGAAGGGGCTGCTACGAAGATGAtta
ctttctttcttttgctCAAAATTGGGCTGGTATCTTCTTGACTTGCATGC
TACAGTCAGATCTGTTCAGCCTTACTGCAAAACGACATGTTTTACTCGAA
CACGATCCCCTTTCAATGCTAGAAGGCTGAAGGTGTATCACACCATTATC
ATACCCTGATATTTTCATTGCATTTTTATTTCGCAGGTACATCATAACAA
AAAGGAAACATGATGAAGGTAGCAAGTATTTTGGTCTTTTTGGCCATAGC
AGCTTCGACTGAAGGCTATGGTGACCCAGGTACGTTTATCGtcatttgta
atttttaaatacaATCTGCGTCAAAAAAATACAGTCTATCTGAGACTTTT
GGTTATTTCCTCCTTTTCGGAAATTTGAAGTTcggagaaagtcgcttttg
ggctatttGTTAAATGTAATCGAATAACGAACTAAAACTCAACACTTCAA
ACCTAAGTAAGAGcacttccaaattgtttgtggcTATGAGATTTCAtggg
aattttcattttttctcaaatattttgatttagatTGTAGAAAATGCAAA
GATTGCCCAGAATGACGAACTGCCAGTCCAAATTCTAAAATTAGTCCACT
TTATTACACTGACCTTTAAATATCCTTAACTAAAttttctcaatcccagc
caagcaaaatctttgatcggagttttttaaaTGTTACCCTAATGGCAGCC
TAGCCTGTTACCCTACTTGATAGCGGTGTAAaagcatcgagagcgctaga
acCAATTTATTCTTcgaatatttttgataatgcgGTTAAAGCTTTGTCCA
GActatataaaggtcagtactGTGTTCCTTTAAACATatctaaaaattgc
actctacaATGTACTGATTTTCATTTTCGTATGTCAACGCAAGCAATACA
CCTTGCATTCCCCTAGCTCCAGGTGATCCTGGACAGCTATTCTATCTCTT
CTTTATTAATAAATCTTTCaatcgaaatttatttttccattccATAGTTT
TGCTTCGAGTACGATCAGTGAACACTGTTTACACCTCAACCTATCTCATC
AAAAAGACACCATTGAACATGCATGCAGCAAAGGAGGCTTGTGCTAAATG
TGGAGGTTTCTTGGCAACTATTGATGATCTGCCAGAACATCATTTCTTAG
TCCATGAATTACAGTAAGTACAAAATACCAAGGTAGATTTCGATTTGACT
ACAcctttttcgaccgtagccgccattTGCCACGCGggaatttttttgtc
cgttttatcaccctaaaaccgtcccagtcttttctTTCGCACCTTATAGA
cagtagaaaaaagtgtaaagaaaaaggattggatcgagtttagggtggta
aaacggacaaaaaaatacctgcgcagcaattggtggctacggtcgaaaat
gtGTATTCTCTAAAACCCTAAGTTTTTACACCTAACAGCAAAAATTATCT
AAAGTTTCTTCGTGAGCGCGTTTTATTGGAGATTTTTTGGTAGcagtttt
tatttgatttggttggtcgttctAAACTGtaataaataaaacaattttgt
tactttttctaaagaatgtgtcacctctattacttcaaatcaCCAATTAG
TAAAGTATCTACAACTACAGCTCATCTCAAAGCCAGGTGGCGCCATCCTT
ATACTTTTATATTCGATCCCTTACATAGGAAACTTCACATCAAATCTGCT
TGGGTTGGATTAAACGACAAAGCTTACGAAAAAGTTTTCAGATGGGATGG
TTCAAATCTCCCAGGATTCAAAAAATGGTGTCCACACGAGCCAAACAATT
TTGGAAACGCTGAAGACTGTGTTGAATTGATCGCTGACAAGAAATGTTTG
AACGATCTTGGTTGCGCGCATGCGCGGccatacatttgtgaaatcaaCCA
AAGCAAAGTGACCAGTGACGTCACAGTCTAAAGAACCACAACATTTTGTC
ATCGTTTTtatttaatacattttttacattttttacacaaacatgcaata
aaatttttacaagGTATCAATAAAGG

Coding sequence (CDS) from alignment at scaffold_433:180467..182742+

>TCONS_00065170 ID=TCONS_00065170|Name=TCONS_00065170|organism=Clytia hemisphaerica|type=CDS|length=1467bp|location=Sequence derived from alignment at scaffold_433:180467..182742+ (Clytia hemisphaerica)
ATGATGAAGGTAGCAAGTATTTTGGTCTTTTTGGCCATAGCAGCTTCGAC
TGAAGGCTATGGTGACCCAGTTTTGCTTCGAGTACGATCAGTGAACACTG
TTTACACCTCAACCTATCTCATCAAAAAGACACCATTGAACATGCATGCA
GCAAAGGAGGCTTGTGCTAAATGTGGAGGTTTCTTGGCAACTATTGATGA
TCTGCCAGAACATCATTTCTTAGTCCATGAATTACAGAAACTTCACATCA
AATCTGCTTGGGTTGGATTAAACGACAAAGCTTACGAAAAAGTTTTCAGA
TGGGATGGTTCAAATCTCCCAGGATTCAAAAAATGGTGTCCACACGAGCC
AAACAATTTTGGAAACGCTGAAGACTGTGTTGAATTGATCGCTGACAAGA
AATGTTTGAACGATCTTGGTTGCGCGCATGCGCGGccatacatttgtgaa
atcaaCCAAAGCAAAGTGACCAGTGACGTCACAGTCTAAATGATGAAGGT
AGCAAGTATTTTGGTCTTTTTGGCCATAGCAGCTTCGACTGAAGGCTATG
GTGACCCAGTTTTGCTTCGAGTACGATCAGTGAACACTGTTTACACCTCA
ACCTATCTCATCAAAAAGACACCATTGAACATGCATGCAGCAAAGGAGGC
TTGTGCTAAATGTGGAGGTTTCTTGGCAACTATTGATGATCTGCCAGAAC
ATCATTTCTTAGTCCATGAATTACAGAAACTTCACATCAAATCTGCTTGG
GTTGGATTAAACGACAAAGCTTACGAAAAAGTTTTCAGATGGGATGGTTC
AAATCTCCCAGGATTCAAAAAATGGTGTCCACACGAGCCAAACAATTTTG
GAAACGCTGAAGACTGTGTTGAATTGATCGCTGACAAGAAATGTTTGAAC
GATCTTGGTTGCGCGCATGCGCGGccatacatttgtgaaatcaaCCAAAG
CAAAGTGACCAGTGACGTCACAGTCTAAATGATGAAGGTAGCAAGTATTT
TGGTCTTTTTGGCCATAGCAGCTTCGACTGAAGGCTATGGTGACCCAGTT
TTGCTTCGAGTACGATCAGTGAACACTGTTTACACCTCAACCTATCTCAT
CAAAAAGACACCATTGAACATGCATGCAGCAAAGGAGGCTTGTGCTAAAT
GTGGAGGTTTCTTGGCAACTATTGATGATCTGCCAGAACATCATTTCTTA
GTCCATGAATTACAGAAACTTCACATCAAATCTGCTTGGGTTGGATTAAA
CGACAAAGCTTACGAAAAAGTTTTCAGATGGGATGGTTCAAATCTCCCAG
GATTCAAAAAATGGTGTCCACACGAGCCAAACAATTTTGGAAACGCTGAA
GACTGTGTTGAATTGATCGCTGACAAGAAATGTTTGAACGATCTTGGTTG
CGCGCATGCGCGGccatacatttgtgaaatcaaCCAAAGCAAAGTGACCA
GTGACGTCACAGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040861XLOC_040861Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065170-proteinTCONS_00065170-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065170-exon-scaffold_433-1491911889:180467..180535TCONS_00065170-exon-scaffold_433-1491911889:180467..180535Clytia hemisphaericaexon
TCONS_00065170-exon-scaffold_433-1510915933:180467..180535TCONS_00065170-exon-scaffold_433-1510915933:180467..180535Clytia hemisphaericaexon
TCONS_00065170-exon-scaffold_433-1575043694:180467..180535TCONS_00065170-exon-scaffold_433-1575043694:180467..180535Clytia hemisphaericaexon
TCONS_00065170-exon-scaffold_433-1491911889:180903..180995TCONS_00065170-exon-scaffold_433-1491911889:180903..180995Clytia hemisphaericaexon
TCONS_00065170-exon-scaffold_433-1510915933:180903..180995TCONS_00065170-exon-scaffold_433-1510915933:180903..180995Clytia hemisphaericaexon
TCONS_00065170-exon-scaffold_433-1575043694:180903..180995TCONS_00065170-exon-scaffold_433-1575043694:180903..180995Clytia hemisphaericaexon
TCONS_00065170-exon-scaffold_433-1491911889:181714..181879TCONS_00065170-exon-scaffold_433-1491911889:181714..181879Clytia hemisphaericaexon
TCONS_00065170-exon-scaffold_433-1510915933:181714..181879TCONS_00065170-exon-scaffold_433-1510915933:181714..181879Clytia hemisphaericaexon
TCONS_00065170-exon-scaffold_433-1575043694:181714..181879TCONS_00065170-exon-scaffold_433-1575043694:181714..181879Clytia hemisphaericaexon
TCONS_00065170-exon-scaffold_433-1491911889:182395..182742TCONS_00065170-exon-scaffold_433-1491911889:182395..182742Clytia hemisphaericaexon
TCONS_00065170-exon-scaffold_433-1510915933:182395..182742TCONS_00065170-exon-scaffold_433-1510915933:182395..182742Clytia hemisphaericaexon
TCONS_00065170-exon-scaffold_433-1575043694:182395..182742TCONS_00065170-exon-scaffold_433-1575043694:182395..182742Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:180467..182742 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.064018	0	0	0	0.10105	0.104941	636.285	75.4587	0	0.116908	0.0807572	0.25352	0	0	0	0	0	0	0.104169	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR013087Znf_C2H2_type
IPR018378C-type_lectin_CS
IPR016187CTDL_fold
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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