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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065242 ID=TCONS_00065242|Name=TCONS_00065242|organism=Clytia hemisphaerica|type=transcript|length=1332bp
GTTTAGGGGTTTTAGTCCGTTTTGgttcttctttgaaaaataaaattgac
cAAGATTTAATTCATCAGGTAAATGCTAATATGATTTAAAAGATTTGTCT
ACAAAACTGCAGTACTTTGCTGTTATAATAAAATCTAACATGCTTGCTTT
GTCATGTTCAAGTTGGCATAAAAACGTCAGATTATAAAGTTaaacaacaa
aaagaaagtGGTTTGCTAAATGAGGATATGTTCATGCCTGTTCCCTCTAC
ATAAGGTCTTTAATATCGTAGAGCATTCCTTATACTTTCTCTTTCATTTC
CAAAATCTATTTCACTGATTTCTGTTGCCGTCAAAATACGAACTTCTGGA
TTAAACGGGTTCCTCAGTATGGCTTCCCTTGTGATCCATGCTATCTGTGT
CTGCTCAACACCTCGGATGTTACCTCTATTCCCATGGGAGGCAGTTAGAG
AGGCACCAGTCAGCTGCCTGACAAATATGATACCTCCCTCGCCATCATCT
AAGATGCAATTCGATTCCTGAAGACCTGCCACTTGAATATTCCTGGGTGC
CTCTGTGCGTGTTACATGGCGTTGGGCTGGTTGATAGGGCGGGGGCGccc
cgaacgtctggtaggagGGTGGAGCAGATGGTGGCTGGTTCAGTCTCCTA
TACTCATATTGCTGCCTACGGTAGGGAGCCTCGTCGGGCCTCTCGCCACA
CATGTAGTAACCCTCCTTCAACCCTCTAGTATAAACAGCCATGGCAAACA
TATCAATAATCAACATGATTGCTAATGCAACAAGAAATCCAATCTCAAAG
TAAAAAACATTCCCAATCTTCTTGTAACTGTGGTGGTTTCCATATTTGAT
ATCATGTATCAGTAAAAACACCAATAGTACAGTTGCACTGACCCAATCTA
CGAAATATAAGAATCTTTGAGCGTAGAAACCAGGTCTACTACAGCAACAA
CAGCACATCAGAACGGACAAGAAACTTAATGCATACACACCCATTTTGAT
GTATAAACATACGAGAGATTCTTCACCGAGTGCAAGGAAGTCCCATTGTA
TTTCGGTGAATGTGACCAAACTTCTCAAAACATCGGTTGGCCCTGAAATG
ACCCTGAATGTAACCAAAGCTGCATGTGGTGTCTGGCAtagaaagaaaag
gaaaaattgataTCTTCTAAATTCTGCTTCCTCCATATCCaatgtttttt
ttgtgatttattcCATGTTAAGTATTCCTATCTAGAATGAAAGTtgtatt
tattatttaattgtCTCACTAGAACCGTTAACTTCAAAGTTCAAATGCCA
GGCTACTCTCTTTAACAAATATGAAGAACACT Run BLAST on NCBI protein sequence of TCONS_00065242-protein >TCONS_00065242-protein ID=TCONS_00065242-protein|Name=TCONS_00065242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MEEAEFRRYQFFLFFLCQTPHAALVTFRVISGPTDVLRSLVTFTEIQWDF
LALGEESLVCLYIKMGVYALSFLSVLMCCCCCSRPGFYAQRFLYFVDWVS
ATVLLVFLLIHDIKYGNHHSYKKIGNVFYFEIGFLVALAIMLIIDMFAMA
VYTRGLKEGYYMCGERPDEAPYRRQQYEYRRLNQPPSAPPSYQTFGAPPP
YQPAQRHVTRTEAPRNIQVAGLQESNCILDDGEGGIIFVRQLTGASLTAS
HGNRGNIRGVEQTQIAWITREAILRNPFNPEVRILTATEISEIDFGNERE
SIRNALRY Run BLAST on NCBI transcript from alignment at scaffold_433:196227..197558 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065242 ID=TCONS_00065242|Name=TCONS_00065242|organism=Clytia hemisphaerica|type=transcript|length=1332bp|location=Sequence derived from alignment at scaffold_433:196227..197558 (Clytia hemisphaerica)
AGTGTTCTTCATATTTGTTAAAGAGAGTAGCCTGGCATTTGAACTTTGAA
GTTAACGGTTCTAGTGAGacaattaaataataaatacaACTTTCATTCTA
GATAGGAATACTTAACATGgaataaatcacaaaaaaaacattGGATATGG
AGGAAGCAGAATTTAGAAGAtatcaatttttccttttctttctaTGCCAG
ACACCACATGCAGCTTTGGTTACATTCAGGGTCATTTCAGGGCCAACCGA
TGTTTTGAGAAGTTTGGTCACATTCACCGAAATACAATGGGACTTCCTTG
CACTCGGTGAAGAATCTCTCGTATGTTTATACATCAAAATGGGTGTGTAT
GCATTAAGTTTCTTGTCCGTTCTGATGTGCTGTTGTTGCTGTAGTAGACC
TGGTTTCTACGCTCAAAGATTCTTATATTTCGTAGATTGGGTCAGTGCAA
CTGTACTATTGGTGTTTTTACTGATACATGATATCAAATATGGAAACCAC
CACAGTTACAAGAAGATTGGGAATGTTTTTTACTTTGAGATTGGATTTCT
TGTTGCATTAGCAATCATGTTGATTATTGATATGTTTGCCATGGCTGTTT
ATACTAGAGGGTTGAAGGAGGGTTACTACATGTGTGGCGAGAGGCCCGAC
GAGGCTCCCTACCGTAGGCAGCAATATGAGTATAGGAGACTGAACCAGCC
ACCATCTGCTCCACCctcctaccagacgttcggggCGCCCCCGCCCTATC
AACCAGCCCAACGCCATGTAACACGCACAGAGGCACCCAGGAATATTCAA
GTGGCAGGTCTTCAGGAATCGAATTGCATCTTAGATGATGGCGAGGGAGG
TATCATATTTGTCAGGCAGCTGACTGGTGCCTCTCTAACTGCCTCCCATG
GGAATAGAGGTAACATCCGAGGTGTTGAGCAGACACAGATAGCATGGATC
ACAAGGGAAGCCATACTGAGGAACCCGTTTAATCCAGAAGTTCGTATTTT
GACGGCAACAGAAATCAGTGAAATAGATTTTGGAAATGAAAGAGAAAGTA
TAAGGAATGCTCTACGATATTAAAGACCTTATGTAGAGGGAACAGGCATG
AACATATCCTCATTTAGCAAACCactttctttttgttgtttAACTTTATA
ATCTGACGTTTTTATGCCAACTTGAACATGACAAAGCAAGCATGTTAGAT
TTTATTATAACAGCAAAGTACTGCAGTTTTGTAGACAAATCTTTTAAATC
ATATTAGCATTTACCTGATGAATTAAATCTTggtcaattttatttttcaa
agaagaacCAAAACGGACTAAAACCCCTAAAC Coding sequence (CDS) from alignment at scaffold_433:196227..197558 >TCONS_00065242 ID=TCONS_00065242|Name=TCONS_00065242|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at scaffold_433:196227..197558 (Clytia hemisphaerica)
ATGGAGGAAGCAGAATTTAGAAGAtatcaatttttccttttctttctaTG
CCAGACACCACATGCAGCTTTGGTTACATTCAGGGTCATTTCAGGGCCAA
CCGATGTTTTGAGAAGTTTGGTCACATTCACCGAAATACAATGGGACTTC
CTTGCACTCGGTGAAGAATCTCTCGTATGTTTATACATCAAAATGGGTGT
GTATGCATTAAGTTTCTTGTCCGTTCTGATGTGCTGTTGTTGCTGTAGTA
GACCTGGTTTCTACGCTCAAAGATTCTTATATTTCGTAGATTGGGTCAGT
GCAACTGTACTATTGGTGTTTTTACTGATACATGATATCAAATATGGAAA
CCACCACAGTTACAAGAAGATTGGGAATGTTTTTTACTTTGAGATTGGAT
TTCTTGTTGCATTAGCAATCATGTTGATTATTGATATGTTTGCCATGGCT
GTTTATACTAGAGGGTTGAAGGAGGGTTACTACATGTGTGGCGAGAGGCC
CGACGAGGCTCCCTACCGTAGGCAGCAATATGAGTATAGGAGACTGAACC
AGCCACCATCTGCTCCACCctcctaccagacgttcggggCGCCCCCGCCC
TATCAACCAGCCCAACGCCATGTAACACGCACAGAGGCACCCAGGAATAT
TCAAGTGGCAGGTCTTCAGGAATCGAATTGCATCTTAGATGATGGCGAGG
GAGGTATCATATTTGTCAGGCAGCTGACTGGTGCCTCTCTAACTGCCTCC
CATGGGAATAGAGGTAACATCCGAGGTGTTGAGCAGACACAGATAGCATG
GATCACAAGGGAAGCCATACTGAGGAACCCGTTTAATCCAGAAGTTCGTA
TTTTGACGGCAACAGAAATCAGTGAAATAGATTTTGGAAATGAAAGAGAA
AGTATAAGGAATGCTCTACGATATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065242-exon-scaffold_433-1491911889:196227..197558 | TCONS_00065242-exon-scaffold_433-1491911889:196227..197558 | Clytia hemisphaerica | exon |
| TCONS_00065242-exon-scaffold_433-1510915933:196227..197558 | TCONS_00065242-exon-scaffold_433-1510915933:196227..197558 | Clytia hemisphaerica | exon |
| TCONS_00065242-exon-scaffold_433-1575043694:196227..197558 | TCONS_00065242-exon-scaffold_433-1575043694:196227..197558 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_433 | supercontig | scaffold_433:196227..197558 . |
Blast
The following BLAST results are available for this feature:
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