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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065221 ID=TCONS_00065221|Name=TCONS_00065221|organism=Clytia hemisphaerica|type=transcript|length=508bp
GCAGATTAAGAGCTGCCTCTTTATCATGGATTGTATATAGAATACGGAAC
TCAAAAATGGTAGATAAGTTGCGAAATAGATTTTTACCTAAACAAGCAGG
GATTCCAAACAAGCACAACCAGCGCATAGATAGAGTCATCTCACCTTTTG
TTTGTCTCACCCATCAACGTATTAAAGTATTTACAACCTGAAAATCAAAG
ATAAATGAAACATGAtgtaaaaattgaaagaataaCAAAAAGTGATGACT
GAAGAAATAAAGGAAGGATTTTTGTGTCCGATATGCTTGAAAGATTTGCA
ATCACCCACCAACTTATCAAAACACTTTGAAGAATTTCATCAAGAAGATG
GAGCAGTGTTGCAACAGTTACGAAGTGTATTTGGTAAACAACCAGCTGGG
AAATCTGGACCAAACCAACCAGCAAAGAATGATGTTGTTGTTTCGAATGG
TACACCAGCCACTGGTGGCATTGATGTTGAATTGTGGGAAACACAGATAA
CTGGTAAT Run BLAST on NCBI transcript from alignment at scaffold_433:469855..473129- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065221 ID=TCONS_00065221|Name=TCONS_00065221|organism=Clytia hemisphaerica|type=transcript|length=3275bp|location=Sequence derived from alignment at scaffold_433:469855..473129- (Clytia hemisphaerica)
GCAGATTAAGAGCTGCCTCTTTATCATGGATTGTATATAGAATACGGAAC
TCAAAAATGGTAGATAAGTTGCGAAATAGATTTTTACCTAAACAAGCAGG
GATTCCAAACAAGCACAACCAGCGCATAGATAGAGTCATCTCACCTTTTG
TTTGTCTCACCCATCAACGTATTAAAGTATTTACAACCTGGTAAGAATAC
TCTTCTTCTATCTGTGTGTTCATTATCAAGATATTTTTTGAAAATTTACT
CTTTTTCACAGTTTTTATTAAGTTGAAAGTTGGTTCGATATTTACGTTTG
ACTAAAAGTTAAGACTTGTCACTTGGACTTGAACACGTTTGATATTTATT
TGATATTCTGAAATTTGGTTTTTGAAGTTCCTGTGATTAATTTTGGAAGT
GGAAACTATTTGAAGCCAATAGTTTATTATAAAAGCCAATAGAGTTTATT
TTTAACAGCTTATTCAAAAGGTTTTATCTATAAATATTTTTAAAAGACAA
GATAGATAAAGAATAAATTAGTAAACCTTTTTAAGATCTGTAAAAAGCTC
TCTACTCCCAAATAGTTCTAGAATAAACCCTGAAAATCCCAAGATAATTG
ATAAATATTAAATCTTTATAGAAAGATTGAAAATGAAAATTCACGAAGAA
AATACAAACCTTAAGCAAAGAAATTGCCTTTATAGCTCATTTTCCCATGA
AAAATAGAAAAACTTTTGGATATTTGAGTTCCCCAAACATTGTAGAATCT
TTTTGTACACATGGCAAAAGAAAAAGAAATAAAATTAAAAACTTAAAATC
AACTGAATTCTTTCAATAATCATATACATAAAAAAACACATTGTGATAAA
TAACGAGATTGCTCACGAGAATTTTTAACCCGCGCGAGCAAACCCGCGCC
TGTATCAATCATTTTTTTAGCTGCTTTTCTTTTCACTTGTGGTTCTGAAA
AAAAGTGATGATAATAAAAAAAGACGAAAGTCGATTTTTTTAGTTGAAAG
TTTTGGAATACTGGATTTTCAAGAGAAGGGAAAGTCATGACTTTTGACTC
TCCCCACCCGCTAACCAACCTGATCTATTTTGAAATACAGTACTTGACGA
CTTGAGTCAAACTGCACTGAGGTGGCACCACTTAGAAAATGTTTTTTTCT
TAAAAATGTAACGGCCACTTAGAAAATGTTTTTTTCTTAAAAATATAATG
GGGATTTTCAAAAATACCAATAAGAGCTCATAAAACCAGAAAAAGTTTGG
TCAATGCTGAAAAAATAACGCAAACTCCAACGCACCGTATAATAGGATTC
GAACTCTCAAAAATGACTTTCACAAACCCTCCAGCCCAACACCTTATCCA
TCGTATCCACTTGGCCACTGAAGATTTATAAAAAATTGGACAATGATAAA
AGATACAATATCTTTATTTTCCATGACCTGTATAATTTTATTTACCCTGT
CAAGGTATTAACTTCTTCAAATGATTTTAGATCATTTCCAACATGCGGGA
GCCGCCGTTATCTGGCACCCGATGTAGAAATTTTCTTCCGACACGCTAAA
GCTCTGAAGGTCGGGAAAATTTTCAAGTATATTGGCCCGCTCCTTTAGAG
CTTTAGCGTGGGCGGCCGCCAATACGCCATCGGAATATCAGATAAGAGCC
GTCGATTCTCAGGGGATGGGATTTACAGGACTCTTTAGTGGAACTGCTGC
AAACGGGCTGTAAACCCTGAATTTTCATCTGGGGGGAGTTAGTTAGGACA
CTCTCCAGTCTCATTAGAGTCTCAAAAGACTGAGGAGAGGAGCTTTTTCT
TGCATACAGTACCCATTTACAGCAGACAGAACTCACAGAGCGCAGAATGC
AGGTCAAAAAATTCCCGTGAGCAATCTCGTTATTTATCAAAAAGTAAAAA
AACGTCCTTTCGCCATTTTGTTTTTTTTAAATGTGAAGTCGGAACTTCTT
GTCACGTGACAAATGAATTTTCAAATTATTAGCTTNNTTTCTGAAGCATA
TAAGATAGAGGAAGACCTACTGAAAAGGGGAAATTAGGGGAACAATTCTA
TCAAAAGTTATTGGCAAAGAAAGTCACCTTTTGAGGTCAAAATTATGGTT
TTTCTTGCATAACCTTTAATTGCAGTACCCCCTTCTTATTCCGGTTTGAC
AACAGGTAGTCAAGTACATCAGAAACATACGGGAATGTTTACACATGGAC
AGGATAAGTTTCCACGAAGCCCCAGCAAGGACAAAAGTTGGATTTGGCTG
AAAATGACTGAAATTGTGATCTTTGATATATTTTTTGGGTAAAAGCTATG
GTAATTCTGTTTGGCTATATGAAAAGCTTATTTATTCCTTGTCAAGATAC
TTTTTATTTGAGATTGATTGCTTTACCAAACAAAAAGATATTAAAATGTC
TTGACAGGCCATTTTGTCATTTTTGTGTCATTTTGGTCAGCTGAACGGAT
TGACGCATTTCTATTGTTTTGTCTTTTGTGACACGTGTGTCGGAAATCTT
GTGTTGTCCCCCCTGTTACAGACAAATTCTGGAATGGCCCAATAGACAAG
GTATATTGGCATTACACAAAGTTATGGTAGGGAAGACTATCTAAATCTAC
AAATTNNTTTTAGATACAAATTTGTGATTTTTTACCATTCTTGTATACTG
ATGATGGCGTAAGCCGAAAAGCTTCTATTTTTATGTAGTGAAATAAATTT
TGATTTTTTACAAATTCATTGTTCACTGAGAAAAATTTTCAGTTAATCCT
TCTTTTTTAATGAACAATTTAGGTGCTACTCATCAAAAAGATTCCTGCAT
AAAAATTGAAACTTAAATCTATGCATAGCTATTATCATGGAAAGTATTTG
GAAAATTCAAGTCAAAGTTGTCAACAGTGATTCTATCCCAAGATATGGTC
ATCCAAAGTTCCAATTTTTTTTTTGGCTTAAAAAAATAAATTTCAAATAT
TTTCCAGAAAATCAAAGATAAATGAAACATGATGTAAAAATTGAAAGAAT
AACAAAAAGTGATGACTGAAGAAATAAAGGAAGGATTTTTGTGTCCGATA
TGCTTGAAAGATTTGCAATCACCCACCAACTTATCAAAACACTTTGAAGA
ATTTCATCAAGAAGATGGAGCAGTGTTGCAACAGTTACGAAGTGTATTTG
GTAAACAACCAGCTGGGAAATCTGGACCAAACCAACCAGCAAAGAATGAT
GTTGTTGTTTCGAATGGTACACCAGCCACTGGTGGCATTGATGTTGAATT
GTGGGAAACACAGATAACTGGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065221-exon-scaffold_433-1575043694:472940..473129 | TCONS_00065221-exon-scaffold_433-1575043694:472940..473129 | Clytia hemisphaerica | exon |
| TCONS_00065221-exon-scaffold_433-1575043694:469855..470172 | TCONS_00065221-exon-scaffold_433-1575043694:469855..470172 | Clytia hemisphaerica | exon |
| TCONS_00065221-exon-scaffold_433-1510915933:472940..473129 | TCONS_00065221-exon-scaffold_433-1510915933:472940..473129 | Clytia hemisphaerica | exon |
| TCONS_00065221-exon-scaffold_433-1510915933:469855..470172 | TCONS_00065221-exon-scaffold_433-1510915933:469855..470172 | Clytia hemisphaerica | exon |
| TCONS_00065221-exon-scaffold_433-1491911889:472940..473129 | TCONS_00065221-exon-scaffold_433-1491911889:472940..473129 | Clytia hemisphaerica | exon |
| TCONS_00065221-exon-scaffold_433-1491911889:469855..470172 | TCONS_00065221-exon-scaffold_433-1491911889:469855..470172 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_433 | supercontig | scaffold_433:469855..473129 - |
Blast
The following BLAST results are available for this feature:
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