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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065230 ID=TCONS_00065230|Name=TCONS_00065230|organism=Clytia hemisphaerica|type=transcript|length=1582bp
attataataacattacccccgtcttttgccagtttggtataatatgttat
gaattgcgtgattttgctgtgcgaCGATAGCTCAAGTGGTAAGGCGTCCG
GTTTGGagaccaaggttgcttgcatttggtggttcgaaccgAGGTGTGGG
AGTATAGTTTCAGTATTAgcaaaatagcatcaaatagtcaaattcagaaa
aaactaagtccagaaatcagaaaaaacagagttagagataggaaatagag
aaaaagaggAGAAGGGCGGAATTGGTGATNAACTGTTAGCGTGCAAGCCA
AGTTGAAAGTTCTGAGAGCCAAGAGAAAAACTGGAAAAGGAAATTGAAGT
ACGAGTGGATTTAACATGCTCCCATCAGTTTTAGTCACAGGTTGCAACAA
AGGAATTGGCTTGGAATTCATAAAACAGCTGGTGGGTAAAACCTCCCACC
TATTTGCAACATGTAGAACCCCCTCAAAtGAGCTGTCCAAATTAGCAGAA
GAGAATTCTAATCTACACATTTTGCATGTTGGTAAGAATATTAAGTAACA
AAGGATGATGACATCTTTGCAGCTAAAGAACAAGTATCACATTTTGTGGA
AGATGGCGGTTTACATTGTCTCATTAACAATGCTGGTGTTGTGAATTATG
AACATGCAAAGATGGAAAATTTGACATCAGAAAGTCTTTTAAATACTTAC
CATATAAACGCTGTTGGTCCTGCCATGATGGTTAAGGCATTCTTACCACT
TTTAAGACAAGCTGCAACAAATTCTTCTTCAACTGCAATGCCTTGTGGCG
TATTGAATATTAGCTCCAGAACTGGATCGATTGAAGATAATGGTATGGGC
AAGCTGTATGGCTCAAGGCTATCCAAAgtAGCTTTAAACATGCTCACAAA
AAACCTAAGCATAGAGTTGAAAGCAGACAATCTCATAGCTGTGGCTTTGA
ATCCTGGATGGGTCAAGACAGAAAATGGTGGGGAGAATGCGCTGATAACA
GCGGAACAAAGTGTACATGGCATGCTCAGTGTTTATAAGGGCTTAACAAT
GAAAGATTCAGGTGCTTTCCTGAGCTATGATGGTTCAACAATACCTTGGT
GatgcaacaaaatttttttattatttttcaatgtaCATTTTTAAGTAATG
TTTTTCTACACATATGCACTACACTATCTGATGATAAAATAGGACGTTCT
CAAATGATTGGATGACATAAATAGAGTACTGCAGGCTATCCTCGAATGCC
CCCATATATACTACATCCCCCTATATAATATACACCTACCAAACCCGCAC
TATTTAAATTAGCGGTCTGTCAAcctttttttaaccattttccaGCCATT
TTCCATTATCAGATATGATGTTTTACAGATTTGGTAATCCTGAGGAAACT
GGATTACACACTATTTTGAAAATAGCGCAACTACTCTTAAGTGCCAAATA
AATGGCCCCCCCCgtttaataatttttaaaaatatttttagctgtCAAAT
AGAAggcccttattttgctctaaatagcctgattttagcctatatttacc
ttattttggggttttcagaagtacaatttcca Run BLAST on NCBI transcript from alignment at scaffold_433:516819..523470- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065230 ID=TCONS_00065230|Name=TCONS_00065230|organism=Clytia hemisphaerica|type=transcript|length=6652bp|location=Sequence derived from alignment at scaffold_433:516819..523470- (Clytia hemisphaerica)
ATTATAATAACATTACCCCCGTCTTTTGCCAGTTTGGTATAATATGTTAT
GAATTGCGTGATTTTGCTGTGCGACGATAGCTCAAGTGGTAAGGCGTCCG
GTTTGGAGACCAAGGTTGCTTGCATTTGGTGGTTCGAACCGAGGTGTGGG
AGTATAGTTTCAGTATTAGCAAAATAGCATCAAATAGTCAAATTCAGAAA
AAACTAAGTCCAGAAATCAGAAAAAACAGAGTTAGAGATAGGAAATAGAG
AAAAAGAGGAGAAGGGCGGAATTGGTGATNAACTGTTAGCGTGCAAGCCA
AGTTGAAAGTTCTGAGAGCCAAGAGAAAAACTGGAAAAGGAAATTGAAGT
ACGAGTGGATTTAACATGCTCCCATCAGTTTTAGTCACAGGTTGCAACAA
AGGAATTGGCTTGGAATTCATAAAACAGCTGGTGGGTAAAACCTCCCACC
TATTTGCAACATGTAGAACCCCCTCAAATGTAAGCTTTTTCACATTTTTG
TTTGACCTTGACACTTTTATTTGACTTGTCAGATTTTAGATGTATAACAA
TAGGGTGTCTCCACAAGGGTCTATGGGCATCAGCAGAAACAACTATATTT
GTTTGTGTTCGATTGCATTTGAATAACGTTTTATTGGTTCATAGACCTTT
TCGCCGACGACCCACGCCACGGCATGGCCCGTCGCCCGAACATGTTCGGT
CCTGTTCGGACCATGCTCGGGCCACAAAAAATTATTATTGAATCGGCCCA
AACATTTTGTTCGGACCATGTCCATAGGAATAGTAGAATAGTAGAATTTA
ATTTTATTTACCTTTCCTGGTTTATCATCATCCATTGTTAAATATTTTCA
TTAGATTATTAGACAAATTCAAAGTTCCAAATACCAGTTTGATTCACAAA
GCTGTATAACAGTACAAAAAAAAATTCCAGAAAAATTCTGCTTCGAATAG
GAGAAGACCACGAGAAAAGGGAACGGGATAAAGAATAAAAAGAACACCAT
ATATTATGTAAGATTCAAATCATTCTTTTTAATAATTTTCCTAACTTAAT
TGGAAAAAAGATGATTAACTTTTATATTTGAACAATATATATTTGAATAA
AGATGAAGATTTTTAAATTTGTTTGCTAAAATAATGAATTTAAAATATAA
ATATTGGGTCCTGAAATTACATGCGGCAAGTTTTCGAAAATCTGGCCCGA
ACATGGTCCGAAACTGCGCCATTTAAAAAAAGTATTAATCAAGAGGCCCG
AACATGTTCGGGCCATGCCGTGGGTCGTTTTCGCCTCCCTTCCATCCGCC
ATATTCCAGACATAATTAATCAAACACAGTTCGATTATAATCGAACAATC
GAACTTTGTCGAACTTAATCGAACGACAAAAGTTGCTAAAATTGTGAGTA
TTCGATTAAGTTCGACAAAACATATTAAGTTTGACAAAGTTTGACAACGA
GAAATGTTTGAAAAATTTGACAAAAAACTCCGTTCGATAAAGTTCAACAA
CAAGGAAAGGTTCGACAAATTCGACAAAAAACTCCGTTCGAAAAAGTTCG
ACAACACAAAATGACCAAGTTCTTCAAAGTGTTGTCAAAAGCTGGCAAAA
ATTACGAAAAATGACCTCCTTTGGGTACCAGCCCCGGTGGGACCAATCTA
GGCCTCTACAGCCCCCCACAGCCCTTCGGACCGCTTTGGATACCCTCTGC
CTTGCTTTCCCTCAAAGCCAGCACCATCCATCAGTCATCCGAAGCCCTTA
AAAGGCTTGGAAAGGCGGAAAGGCTTGAAATTGGTCAAAATTGGAAAAAA
AATGACCTCCTTTGGGTACCACTGCGGACGGCCCCTGGGGGTCCTGGCCG
GTGTGCCGGGGGGTCTGATCGGTGCTCAGTGGTCAGGGGGGTGTAAGCGA
ACACGCCTGCCCCGTTGGGGGTCCTTCAAAATTCCTCAAAGTGCCATCAA
AAGCCGGCAAAAGTTGTCAATAATGACCTCCTCAATTGAGGCTGCTACAC
CCCTTTCTCACCAGGAAAAATCGATGGTGAGACCAATTGAGGCCTCTACA
GCCCTCCATAGCCCCTGTATTTTTGCATACATCAAGATAACGGATGGAAA
TGCGAAAAGGTCTATTGATTTCAAATAGCTTTACTTTCAATCGATCTTCT
ATTATGTTGGATTAGTATGATTACGATTATGTTTGATAAGTTTGATTGCA
ATTTAATTGGCCCACTCCTTTCTTTATACATAGAGCTTTAGCGTGGGTGG
CCATGGGAAAATTAAATAAGAGTGACTGCATAAGTACCTTACAAGAAAGG
CCATATATATTTTAGAAGGGCACTTTTTCCAGTGTTTTTCCATTAAAAAG
GCTGTTTTTACCAATATTTTAGTAATTTCAAGAGGGGCAAGGTACGATAA
CTGGACCCTTATAGGGCATGAAAAATGACCTGCATCAGTAAATAAATCAA
ATGAATGTAATCAAACATAATCGAATACAATCAAACGTAACTGAAGCAAT
TGAATGGCAAATCCTGTGTAATATTCAATTACGACATTCGACAATTCAAT
CACAATTATTCAACTGCATTTGATTGTGTTCAATTGATTAGGTATTCGAT
TAATTTGATTGACACCGTCTGGCCATGGCAACAACAATGATGATAGCGAC
TTCAGAATTCACACAGCTTTTGTTGATGCCAAACCAAATGTTTCATTTTT
TTGTGAATTTTGAACCCTTCTAACTTTTCTCTACCGTCAACTGCTCTAAC
TTGGGACGATTGGTCGAAACATACCGGGTGTCTGTGAAAATACTTCCCCC
TGTTTGATTCAATATTGCGAAAAAGTGAAAAAATATATTAGCTTTATTTT
TTCTAAATCGTTTAGAGGAGGGTTTAACTTAAATTTTGGTATATCAAACT
TTAACATTGCTTCATTAGATCAAAAGTTATGACAAAAAGAGTAAAAAAAT
TGTTGTCAAAAAGAGCACAAAAAGACGAAAAAACAAGGTATCAATTTACT
TTTGATCTTCNGATAACTTTCACTGATAGTGCGCCGTTTTTAATTTTTTT
TATTCAAAATGACCGGATGCCGATTGAAGAAATAGAGAAAAAAGTTGCAA
TCATTGATGAACAATTATGTATGTCTCTGGAAATGGTTGAAAACATAGTT
GCAGGTTGAAACTTTGTATGTTTATCAGAAAGGAATTTAATAAGAACTTT
AACACTATTACATTATTAAAATTTATTGTTCAAGGAGCTGTCCAAATTAG
CAGAAGAGAATTCTAATCTACACATTTTGCATGTTGGTAAGAATATTGTA
AGTTTTCTCACTATATTTATAAAATAATGTAGAATTAAAAAACTCTGGAG
AAGATTTTCAACCAAAATTATAGAAAACAGTGGTGTCTTATCATTTCATG
GACAAGTTCTATTGAGTTTATTAAACTTAAAAGTACCTAGAAGGGAATCT
TTTGGATGGAAAACTAAGCAACTAATGTCACAGGTTGGTTACCCAATTGT
AGTTTTCACTCGAGAACAATGAAAAGAAACAATAGATTCAAAAGTTTACC
ACGTGGTAGCAAAATTTGAAGAAGGGAATCTTTTGGATGGAAAACTAAGC
AACTAATGTTACAGGTTGGTTACCCAATTGTGGTTTTCACTCGAGAACAA
TGAAAAGAACCAATAGATTCGAAAGTGTTTACCACATGGTAGCAAAATAG
AGTGCACTCTTTAAGCAAATGGACTACGTAAACATTTTCGAGCTTATCTA
CAATAGTGTGGTGGTTCCCCTTAATTTGAATAGCATTGCCATCAAGGCAG
AAGATCCAATCTCAAAATAAGTACATGAGAAAACTTCTTTTACTTTGCTA
GCTTGAAATTTGAGTTTGTCCCCCTTTTTTCTCTTGATCCTACCCAACTA
AAAGAAAAAGGCCAGAATCTCAGAATTTTAAGTTAGGAAAGCAAAAAAAG
TCTCAGTTATCTCAACACTAATTTTGAGATTGGATCCTCTGCCTCGATAG
CAGTGATAGATGGATCCATTTTGATTTCATAGAAGTAACAAAGGATGATG
ACATCTTTGCAGCTAAAGAACAAGTATCACATTTTGTGGAAGATGGCGGT
TTACATTGTCTCATTAACAATGCTGGTGTTGTGAATTATGAACATGCAAA
GATGGAAAATTTGACATCAGAAAGTCTTTTAAATACTTACCATATAAACG
CTGTTGGTCCTGCCATGATGGTTAAGGTAGACAATTTCTCTCATGCCTTG
TCAGGGAGTCAAGAAAGTCTGGATAATAATTTCTTTTTGTCTTCATTTTA
CAGTTCCTTGGTTGATTCTAGTTTTAACAAAACCCTGATTATAGCTTTCT
ATTTTCAGGCATTCTTACCACTTTTAAGACAAGCTGCAACAAATTCTTCT
TCAACTGCAATGCCTTGTGGCGTATTGAATATTAGCTCCAGAACTGGATC
GATTGAAGATAATGGTATGGGCAAGCTGTATGGCTCAAGGCTATCCAAAG
TAAGCGCGATATTCTAAATAGAACATTTAGCATAATTTTAATAATATTTA
CGACTTCAGGTGAGCTTTCACGATGCTCAATGGAAACTGGTAGTTACCAT
GCCCTTGTGCTTTTTTTCAGACGTGCCGATTTTTGAATAAACGTATCGTC
TCATTTATATTCTTTTATATCATTTATTTTCCAGGGAGAAAGAAGATAAC
GAACTAGCTAACTAGCTATATTTTGTTTAAGATTTGTTCTTGTTTTCTAT
AAAAAAAATTTATTTTGTTTTGAAAAGAATTCGAATGTCANTTCAACACT
AATTTTGAGATTGGATCCTCTGCCTCGATAGCAGCGATAGATGGATCCAT
TTTGATTTCATAGAAGTAACAAAGGATGATGACATCTTTGCAGCTGCTGA
ACAAGTATCACATTTTGTGGAAGATGGCGGTTTACATTGTCTCATTAACA
ATGCTGGTGTTGTGAATTATGAACATGCAAAGATGGAAAATTTGACATCA
GAAAGTCTTTTAAATACTTACCATATAAACGCTGTTGGTCCTGCCATGAT
GGTTAAGGTAGACAATTTCTCTCATGCCTTGTCAGGGAGTCAAGAAAGTC
TGGATAATAATTTCTTTTTGTCTTCATTTTACAGTTCCTTGGTTGATTCT
AGTTTTAACAAAACCCTGATTATAGCTTTCTATTTTCAGGCATTCTTACC
ACTTTTAAGACAAGCTGCAACAAATTCTTCTTCAACTGCAATGCCTTGTG
GCGTATTGAATATTAGCTCCAGAACTGGATCGATTGAAGATAATGGTATG
GGCAAGCTGTATGGCTCAAGGCTATCCAAAGTAAGCGCGATATTCTAAAT
AGAACATTTAGCATAATTTTAATAATATTTACGACTTCAGGTGAGCTTTC
ACGATGCTCAATGGAAACTGGTAGTTACCATGCCCTTGTGCTTTTTTTCA
GACGTGCCGATTTTTGAATAAACGTATCGTCTCATTTATATTCTTTTATA
TCATTTATTTTCCAGGGAGAAAGAAGATAACGAACTAGCTAACTAGCTAT
ATTTTGTTTAAGATTTGTTCTTGTTTTCTATAAAAAAAATTTATTTTGTT
TTGAAAAGAATTCGAATGTCATTAGTAATCAAATAAGGTCGTCAATTACA
TTTGAAAATATATAAAAGAAAAGAGAAAAAAAAGGGGTAAAAAGGGCAGA
AATTAAAATTGCTTAATGTAGATGGGTATTTAATTTCAAAACAAAGGCCA
AACGAAGTCTACAGGCTCTATCAACAAAAACATTCCGAAAACGAAAGAGT
AACACATGTACAGACAGACAGACAGACAAACAAACAAACAAACAAAGTGA
CATACAGACTACGGCTATTAATTTAACGTAGTATATAAATACAGTAAAAC
ACTTTCAATCATATTCATTGTTCTTTGACCTATCTTTTTCATTTCAGGTA
GCTTTAAACATGCTCACAAAAAACCTAAGCATAGAGTTGAAAGCAGACAA
TCTCATAGCTGTGGCTTTGAATCCTGGATGGGTCAAGACAGAAAATGGTG
GGGAGAATGCGCTGATAACAGCGGAACAAAGTGTACATGGCATGCTCAGT
GTTTATAAGGGCTTAACAATGAAAGATTCAGGTGCTTTCCTGAGCTATGA
TGGTTCAACAATACCTTGGTGATGCAACAAAATTTTTTTATTATTTTTCA
ATGTACATTTTTAAGTAATGTTTTTCTACACATATGCACTACACTATCTG
ATGATAAAATAGGACGTTCTCAAATGATTGGATGACATAAATAGAGTACT
GCAGGCTATCCTCGAATGCCCCCATATATACTACATCCCCCTATATAATA
TACACCTACCAAACCCGCACTATTTAAATTAGCGGTCTGTCAACCTTTTT
TTAACCATTTTCCAGCCATTTTCCATTATCAGATATGATGTTTTACAGAT
TTGGTAATCCTGAGGAAACTGGATTACACACTATTTTGAAAATAGCGCAA
CTACTCTTAAGTGCCAAATAAATGGCCCCCCCCGTTTAATAATTTTTAAA
AATATTTTTAGCTGTCAAATAGAAGGCCCTTATTTTGCTCTAAATAGCCT
GATTTTAGCCTATATTTACCTTATTTTGGGGTTTTCAGAAGTACAATTTC
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065230-exon-scaffold_433-1575043694:522992..523470 | TCONS_00065230-exon-scaffold_433-1575043694:522992..523470 | Clytia hemisphaerica | exon |
| TCONS_00065230-exon-scaffold_433-1575043694:520174..520236 | TCONS_00065230-exon-scaffold_433-1575043694:520174..520236 | Clytia hemisphaerica | exon |
| TCONS_00065230-exon-scaffold_433-1575043694:519245..519438 | TCONS_00065230-exon-scaffold_433-1575043694:519245..519438 | Clytia hemisphaerica | exon |
| TCONS_00065230-exon-scaffold_433-1575043694:518141..518281 | TCONS_00065230-exon-scaffold_433-1575043694:518141..518281 | Clytia hemisphaerica | exon |
| TCONS_00065230-exon-scaffold_433-1575043694:516819..517523 | TCONS_00065230-exon-scaffold_433-1575043694:516819..517523 | Clytia hemisphaerica | exon |
| TCONS_00065230-exon-scaffold_433-1510915933:522992..523470 | TCONS_00065230-exon-scaffold_433-1510915933:522992..523470 | Clytia hemisphaerica | exon |
| TCONS_00065230-exon-scaffold_433-1510915933:520174..520236 | TCONS_00065230-exon-scaffold_433-1510915933:520174..520236 | Clytia hemisphaerica | exon |
| TCONS_00065230-exon-scaffold_433-1510915933:519245..519438 | TCONS_00065230-exon-scaffold_433-1510915933:519245..519438 | Clytia hemisphaerica | exon |
| TCONS_00065230-exon-scaffold_433-1510915933:518141..518281 | TCONS_00065230-exon-scaffold_433-1510915933:518141..518281 | Clytia hemisphaerica | exon |
| TCONS_00065230-exon-scaffold_433-1510915933:516819..517523 | TCONS_00065230-exon-scaffold_433-1510915933:516819..517523 | Clytia hemisphaerica | exon |
| TCONS_00065230-exon-scaffold_433-1491911889:522992..523470 | TCONS_00065230-exon-scaffold_433-1491911889:522992..523470 | Clytia hemisphaerica | exon |
| TCONS_00065230-exon-scaffold_433-1491911889:520174..520236 | TCONS_00065230-exon-scaffold_433-1491911889:520174..520236 | Clytia hemisphaerica | exon |
| TCONS_00065230-exon-scaffold_433-1491911889:519245..519438 | TCONS_00065230-exon-scaffold_433-1491911889:519245..519438 | Clytia hemisphaerica | exon |
| TCONS_00065230-exon-scaffold_433-1491911889:518141..518281 | TCONS_00065230-exon-scaffold_433-1491911889:518141..518281 | Clytia hemisphaerica | exon |
| TCONS_00065230-exon-scaffold_433-1491911889:516819..517523 | TCONS_00065230-exon-scaffold_433-1491911889:516819..517523 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_433 | supercontig | scaffold_433:516819..523470 - |
Blast
The following BLAST results are available for this feature:
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