TCONS_00065274 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065274
Unique NameTCONS_00065274
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1077

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065274 ID=TCONS_00065274|Name=TCONS_00065274|organism=Clytia hemisphaerica|type=transcript|length=1077bp
ATTTATTATCAAATACGAGGAATAAGtttcagattttattttcattttca
acggCTTTTGCGTGGTTCTGGTTTTGTGAAATTAAGAAAGTTATCAAATA
ATAGTAAGTTTTACAGGATGAGACTCATCTTTCTGTCGATTGccgcattt
ttaaattttgtgtttGGTCAAATCATGAGACTACCTCAATGTAACAAATA
CGGAGCCACTTTTAAAGTTTCCAAACGTAAACTCAAAGTTGAAGCTAAGT
TCGATGCTCAAAGGTTGAACActcatgaaaaaattaaatccaaaGAGATA
TGCAGTTCTCTTTGCATCGAGAATGACGATTGCCAATCAGCTTTTTATGG
ACGCTTAACCAAAAAATGCTTCCTGTATAACAAGAAGTTTGATCCAGATG
AGCTGGAAGAGTCAGATACAATGTTTTATCTGACAACTGCACAAAACGAC
GGAGATAACCATCACGGCCACGCATGCGCATCAAACAAATGTAATCCAAA
GGGCACAGAAAAATGTGAAGAAACTTGTGAACAACCCAATGGATACAAAT
GTTATTGTTTGAAAGGATTCGGTGGCGATTTTTGCGAAGAAAGATTATTA
TGCAATCGAACGATTAAACCAATTGGTTGTTTTGCTGATTCTCCATCTGA
TCGAGCAATGGCCATCTTCATTGGAAATTATAGAGATGACATCGATTGGG
ATAATTATGAAGTTAATTTCGAAGAGATATTATGCAAATGCATAGGAGAA
ACTGAATGAGTTGACACCGGTATCAAATTCCTTGGAATTCAATCTTATGG
AGAGTGTCGTGGAACAACGGATACAGGCTACGCACGACACGGTGCTAGTA
CGGCCTGCAAAACTGCTCAATTTACAGAATGTTTTGGAAAAGACATTTGC
ACTGGTCCAGATGATACCAATTACGTTTACGAACTTCCATGAGAAATCAT
CGTTTCTTCACTCTGACACGATCGAAATCAATGATTAAACTATCAATTTA
ATTATGATCGTAAAGTTAAATCCTCAAAAAACATTTACCCCTGTTTTACC
CCCTCCAGGaaaatgttccaaaattta
Run BLAST on NCBI

protein sequence of TCONS_00065274-protein

>TCONS_00065274-protein ID=TCONS_00065274-protein|Name=TCONS_00065274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
IYYQIRGISFRFYFHFQRLLRGSGFVKLRKLSNNSKFYRMRLIFLSIAAF
LNFVFGQIMRLPQCNKYGATFKVSKRKLKVEAKFDAQRLNTHEKIKSKEI
CSSLCIENDDCQSAFYGRLTKKCFLYNKKFDPDELEESDTMFYLTTAQND
GDNHHGHACASNKCNPKGTEKCEETCEQPNGYKCYCLKGFGGDFCEERLL
CNRTIKPIGCFADSPSDRAMAIFIGNYRDDIDWDNYEVNFEEILCKCIGE
TE
Run BLAST on NCBI

transcript from alignment at scaffold_435:35760..38887-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065274 ID=TCONS_00065274|Name=TCONS_00065274|organism=Clytia hemisphaerica|type=transcript|length=3128bp|location=Sequence derived from alignment at scaffold_435:35760..38887- (Clytia hemisphaerica)
ATTTATTATCAAATACGAGGAATAAGTTTCAGATTTTATTTTCATTTTCA
ACGGCTTTTGCGTGGTTCTGGTTTTGTGAAATTAAGAAAGTTATCAAATA
ATAGTAAGTTTTACAGGATGAGACTCATCTTTCTGTCGATTGCCGCATTT
TTAAATTTTGTGTTTGGTCAAATCATGAGACTACCTCAATGTAACAAATA
CGGAGCCACTTTTAAAGTTTCCAAACGTAAACTCAAAGTTGAAGCTAAGT
TCGATGCTCAAAGGTTGAACACTCATGAAAAAATTAAATCCAAAGAGATA
TGCAGTTCTCTTTGCATCGAGAATGACGATTGCCAATCAGCTTTTTATGG
ACGCTTAACCAAAAAATGCTTCCTGTATAACAAGAAGTTTGATCCAGATG
AGCTGGAAGAGTCAGATACAATGTTTTATCTGACAACTGCACAAAACGAC
GGAGATAACCATGTAAGGAATCATTCTTCTTTAGTTTATAACAACCAGTC
AACTTTGCTGAGATATCAGAAACTCAAAAACTATTACCAAATTTAAAAAT
TCCCTTTTTTTGAGTTGCTAAATTCCTCCAATATGCTCCAATTTATACGA
AAATTGCAAATTAGTCCATTCACTAACTTCTCCTTGAAATTTCTTCTCTT
AATGTAGTTTTTATTTTTTTGAATTTTAAGAATTATTTAGCTTCTGATGT
AAATCAGTTTCCCTTGAGTTTCCTGTAGATGGAACCTCAGTGAAATGCTG
GTAGAGGTCTTTTCAGAACCACGTGTCTGGACCTCCGAGATAATGACATT
CTTACTATAATACTGTAAATGATTGGTAATTTCAGCACGGCCACGCATGC
GCATCAAACAAATGTAATCCAAAGGGCACAGAAAAATGTGAAGAAACTTG
TGAACAACCCAATGGATACAAATGTTATTGTTTGAAAGGATTCGGTGGCG
ATTTTTGCGAAGAAAGTAAGTAAACACTTGTTTAAAAGTAAGTAATGCGT
GAAATAAGAACCAGTCAGAGTCGGAGGTGACCCGTTTTTAATAATGTCAC
CACTCTGTCACCTTGGCTTACCCAGCACACACCATTTATCCTTGAATGAA
TGGCTGAATAATTTTTGATGAATCCTTATTTCCTCCGATACTCAAAACAA
TCATCGTCCAGTCTAAATCTGGACGCATTAAACTTTCTTTAAAAACATTT
TATGATTGATCATTTAGTTGAAGCACATTCGCTTTAAGTCTGCGCTCTTT
TTAGTGACCAAATAGAAACCACACTGACGGGGATCTGTTCAACCAAATAG
AAACCACACTCACGGGAATTTGTTCAACCAAATAGAAACCACACTCACGG
GGATCCGTTCAACCAAATAGAAACCACACTCACGGGAATCTGTTCAACCA
AATAGAAACCACACTCACGGGAATCTGTTCAACCAAATAGAAACCACACT
CACGGGGATCTGTTCAACCAAATAGAAACCACATTCACGGGAATCTGTTT
AATTCAACTAACATAGTTTACATATGGTATGGTTGTAAAAAAGAGTGCGT
GGTTAGGACTTATTGAATATTACAGTAAAATTAATCTACAATCATGGTCA
AAATTTAATGAGAATTTAGCTTATTTCCTCGTTTTTCGAAATTTGGAGTT
CGGGCGGTAAAGTCGCTTTTGGGCTAATTGATAAATTTATTCGAGTATTT
CAATTTGGGTGGGGTTTACAGACTTCTGGGCCATATTTTGAGCCCTATTG
GACTTTTCTTGAACTTTTGGATCCTCTCATCCTAAGGTCCTAAGTCTTAA
ACCTAGCCTTAAAACTCAGAGTTAAAACTCTACCCTTCCAACCTAATTTA
GAGCGCTTGCAAATCGTTTGTGGGAATTTCCCTTTTTCTCAAATATTATG
ACCGTGATTGTAATTTTTGTTTCAGGATTATTATGCAATCGAACGATTAA
ACCAATTGGTTGTTTTGCTGATTCTCCATCTGATCGAGCAATGGCCATCT
TCATTGGAAATTATAGAGATGACATCGATTGGGATAATTATGAAGTTAAT
TTCGAAGAGTATGTAGATAGTCTCCCTTCAATTTGAATGAAATGTTAGAA
TTTAAACGCATTATTTTGATATTTTGTGTTAACTATCTTTCTTTTCTTTC
CTTACTGTACACTTGGGCCTGTCCAATTGATTTAGTTTGATTAGTGGATG
AAATTTTCCGTGTTTACCGTATTTAAGGTTAACTTTCAAGACAAAAATCT
TGCTGAAACTTCCAATCACAAAAATGTTTGCAATAATTAATGATATTCAT
GACGCAACGTTTTTTACGGCAACACCCCGGTTATTTCCAGTAGTGGCAAA
TTAGAGCTTAGCAGCAAATTAGAGCTAAAAATAAATTCGTCACTACTAGC
AAAAATTAGGGTGTTTCCTTCAAGAACATTACGTTCTGAAAAAAAACCAC
GAATAAAATTTACTGTCCGATTTGAGATAAGTCAGAGTAGCAGTTACAGC
GAAAGTTAGGTAAAAATACTGAGCAGTCTTTAAAAAAACAGCCACACAGC
TGCCCGAGTAAAATACTGCATAGTGTCTTAGATAGTCAAGACCCATATAT
TCATGATATTCACGAAGTAATGTTTTATAAGAAAACACACATAAAAACTC
GTTTTTTTTGCCACTAGTTTTGTTGTTTAAATTCAAAACTAGTGAAAAAC
GCCCTGTTGTTTTTGAAAGCTTCCGTATAAAACATTACGTCATGAATAAC
ATAAATAGATACATTTCTTTTTCCAGGATATTATGCAAATGCATAGGAGA
AACTGAATGAGTTGACACCGGTATCAAATTCCTTGGAATTCAATCTTATG
GAGAGTGTCGTGGAACAACGGATACAGGCTACGCACGACACGGTGCTAGT
ACGGCCTGCAAAACTGCTCAATTTACAGAATGTTTTGGAAAAGACATTTG
CACTGGTCCAGATGATACCAATTACGTTTACGAACTTCCATGAGAAATCA
TCGTTTCTTCACTCTGACACGATCGAAATCAATGATTAAACTATCAATTT
AATTATGATCGTAAAGTTAAATCCTCAAAAAACATTTACCCCTGTTTTAC
CCCCTCCAGGAAAATGTTCCAAAATTTA

Coding sequence (CDS) from alignment at scaffold_435:35760..38887-

>TCONS_00065274 ID=TCONS_00065274|Name=TCONS_00065274|organism=Clytia hemisphaerica|type=CDS|length=3036bp|location=Sequence derived from alignment at scaffold_435:35760..38887- (Clytia hemisphaerica)
GATATTATGCAAATGCATAGGAGAAACTGAATGAGATTATTATGCAATCG
AACGATTAAACCAATTGGTTGTTTTGCTGATTCTCCATCTGATCGAGCAA
TGGCCATCTTCATTGGAAATTATAGAGATGACATCGATTGGGATAATTAT
GAAGTTAATTTCGAAGACACGGCCACGCATGCGCATCAAACAAATGTAAT
CCAAAGGGCACAGAAAAATGTGAAGAAACTTGTGAACAACCCAATGGATA
CAAATGTTATTGTTTGAAAGGATTCGGTGGCGATTTTTGCGAAGAAAATT
TATTATCAAATACGAGGAATAAGTTTCAGATTTTATTTTCATTTTCAACG
GCTTTTGCGTGGTTCTGGTTTTGTGAAATTAAGAAAGTTATCAAATAATA
GTAAGTTTTACAGGATGAGACTCATCTTTCTGTCGATTGCCGCATTTTTA
AATTTTGTGTTTGGTCAAATCATGAGACTACCTCAATGTAACAAATACGG
AGCCACTTTTAAAGTTTCCAAACGTAAACTCAAAGTTGAAGCTAAGTTCG
ATGCTCAAAGGTTGAACACTCATGAAAAAATTAAATCCAAAGAGATATGC
AGTTCTCTTTGCATCGAGAATGACGATTGCCAATCAGCTTTTTATGGACG
CTTAACCAAAAAATGCTTCCTGTATAACAAGAAGTTTGATCCAGATGAGC
TGGAAGAGTCAGATACAATGTTTTATCTGACAACTGCACAAAACGACGGA
GATAACCATGATATTATGCAAATGCATAGGAGAAACTGAATGAGATTATT
ATGCAATCGAACGATTAAACCAATTGGTTGTTTTGCTGATTCTCCATCTG
ATCGAGCAATGGCCATCTTCATTGGAAATTATAGAGATGACATCGATTGG
GATAATTATGAAGTTAATTTCGAAGACACGGCCACGCATGCGCATCAAAC
AAATGTAATCCAAAGGGCACAGAAAAATGTGAAGAAACTTGTGAACAACC
CAATGGATACAAATGTTATTGTTTGAAAGGATTCGGTGGCGATTTTTGCG
AAGAAAATTTATTATCAAATACGAGGAATAAGTTTCAGATTTTATTTTCA
TTTTCAACGGCTTTTGCGTGGTTCTGGTTTTGTGAAATTAAGAAAGTTAT
CAAATAATAGTAAGTTTTACAGGATGAGACTCATCTTTCTGTCGATTGCC
GCATTTTTAAATTTTGTGTTTGGTCAAATCATGAGACTACCTCAATGTAA
CAAATACGGAGCCACTTTTAAAGTTTCCAAACGTAAACTCAAAGTTGAAG
CTAAGTTCGATGCTCAAAGGTTGAACACTCATGAAAAAATTAAATCCAAA
GAGATATGCAGTTCTCTTTGCATCGAGAATGACGATTGCCAATCAGCTTT
TTATGGACGCTTAACCAAAAAATGCTTCCTGTATAACAAGAAGTTTGATC
CAGATGAGCTGGAAGAGTCAGATACAATGTTTTATCTGACAACTGCACAA
AACGACGGAGATAACCATGATATTATGCAAATGCATAGGAGAAACTGAAT
GAGATTATTATGCAATCGAACGATTAAACCAATTGGTTGTTTTGCTGATT
CTCCATCTGATCGAGCAATGGCCATCTTCATTGGAAATTATAGAGATGAC
ATCGATTGGGATAATTATGAAGTTAATTTCGAAGACACGGCCACGCATGC
GCATCAAACAAATGTAATCCAAAGGGCACAGAAAAATGTGAAGAAACTTG
TGAACAACCCAATGGATACAAATGTTATTGTTTGAAAGGATTCGGTGGCG
ATTTTTGCGAAGAAAATTTATTATCAAATACGAGGAATAAGTTTCAGATT
TTATTTTCATTTTCAACGGCTTTTGCGTGGTTCTGGTTTTGTGAAATTAA
GAAAGTTATCAAATAATAGTAAGTTTTACAGGATGAGACTCATCTTTCTG
TCGATTGCCGCATTTTTAAATTTTGTGTTTGGTCAAATCATGAGACTACC
TCAATGTAACAAATACGGAGCCACTTTTAAAGTTTCCAAACGTAAACTCA
AAGTTGAAGCTAAGTTCGATGCTCAAAGGTTGAACACTCATGAAAAAATT
AAATCCAAAGAGATATGCAGTTCTCTTTGCATCGAGAATGACGATTGCCA
ATCAGCTTTTTATGGACGCTTAACCAAAAAATGCTTCCTGTATAACAAGA
AGTTTGATCCAGATGAGCTGGAAGAGTCAGATACAATGTTTTATCTGACA
ACTGCACAAAACGACGGAGATAACCATGATATTATGCAAATGCATAGGAG
AAACTGAATGAGATTATTATGCAATCGAACGATTAAACCAATTGGTTGTT
TTGCTGATTCTCCATCTGATCGAGCAATGGCCATCTTCATTGGAAATTAT
AGAGATGACATCGATTGGGATAATTATGAAGTTAATTTCGAAGACACGGC
CACGCATGCGCATCAAACAAATGTAATCCAAAGGGCACAGAAAAATGTGA
AGAAACTTGTGAACAACCCAATGGATACAAATGTTATTGTTTGAAAGGAT
TCGGTGGCGATTTTTGCGAAGAAAATTTATTATCAAATACGAGGAATAAG
TTTCAGATTTTATTTTCATTTTCAACGGCTTTTGCGTGGTTCTGGTTTTG
TGAAATTAAGAAAGTTATCAAATAATAGTAAGTTTTACAGGATGAGACTC
ATCTTTCTGTCGATTGCCGCATTTTTAAATTTTGTGTTTGGTCAAATCAT
GAGACTACCTCAATGTAACAAATACGGAGCCACTTTTAAAGTTTCCAAAC
GTAAACTCAAAGTTGAAGCTAAGTTCGATGCTCAAAGGTTGAACACTCAT
GAAAAAATTAAATCCAAAGAGATATGCAGTTCTCTTTGCATCGAGAATGA
CGATTGCCAATCAGCTTTTTATGGACGCTTAACCAAAAAATGCTTCCTGT
ATAACAAGAAGTTTGATCCAGATGAGCTGGAAGAGTCAGATACAATGTTT
TATCTGACAACTGCACAAAACGACGGAGATAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040924XLOC_040924Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065274-exon-scaffold_435-1575043694:38426..38887TCONS_00065274-exon-scaffold_435-1575043694:38426..38887Clytia hemisphaericaexon
TCONS_00065274-exon-scaffold_435-1575043694:37923..38052TCONS_00065274-exon-scaffold_435-1575043694:37923..38052Clytia hemisphaericaexon
TCONS_00065274-exon-scaffold_435-1575043694:36830..36962TCONS_00065274-exon-scaffold_435-1575043694:36830..36962Clytia hemisphaericaexon
TCONS_00065274-exon-scaffold_435-1575043694:35760..36111TCONS_00065274-exon-scaffold_435-1575043694:35760..36111Clytia hemisphaericaexon
TCONS_00065274-exon-scaffold_435-1510915933:38426..38887TCONS_00065274-exon-scaffold_435-1510915933:38426..38887Clytia hemisphaericaexon
TCONS_00065274-exon-scaffold_435-1510915933:37923..38052TCONS_00065274-exon-scaffold_435-1510915933:37923..38052Clytia hemisphaericaexon
TCONS_00065274-exon-scaffold_435-1510915933:36830..36962TCONS_00065274-exon-scaffold_435-1510915933:36830..36962Clytia hemisphaericaexon
TCONS_00065274-exon-scaffold_435-1510915933:35760..36111TCONS_00065274-exon-scaffold_435-1510915933:35760..36111Clytia hemisphaericaexon
TCONS_00065274-exon-scaffold_435-1491911889:38426..38887TCONS_00065274-exon-scaffold_435-1491911889:38426..38887Clytia hemisphaericaexon
TCONS_00065274-exon-scaffold_435-1491911889:37923..38052TCONS_00065274-exon-scaffold_435-1491911889:37923..38052Clytia hemisphaericaexon
TCONS_00065274-exon-scaffold_435-1491911889:36830..36962TCONS_00065274-exon-scaffold_435-1491911889:36830..36962Clytia hemisphaericaexon
TCONS_00065274-exon-scaffold_435-1491911889:35760..36111TCONS_00065274-exon-scaffold_435-1491911889:35760..36111Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065274-proteinTCONS_00065274-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_435supercontigscaffold_435:35760..38887 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.040873	0.119573	0	0	0	0	0	0	0.31062	0.0426631	0.493645	0.14358	0.135917	0.0478978	0.0928361	0.0747205	0.76708	1.47812	0.0827192	0.250084	2.76628	2.66004	3.18676	6.64658	9.39107	11.2575	0.22418	0	0.0664079	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013032EGF-like_CS
IPR003609Pan_app
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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