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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065314 ID=TCONS_00065314|Name=TCONS_00065314|organism=Clytia hemisphaerica|type=transcript|length=1872bp
tttaacagtgtcgactgcgcacgcgtatgaacaatttgccattgttttga
ttttggcaaccacgggaaacttcactctccccgtaaaaaatggtaggtaa
acatccagttctcataaggaaacccagcagagaaatggtaggtaaagaac
tccttttaatcataacttcttttcctcttgatgaatttttgtgaaatttt
caggagagatacataaaattgtcattaatatcatgttcaaatNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaatggcaatgttt
acatttctctaaccttccacagtactaaagtgagcatttttacctaccgc
ctctacggtggagatggcgaaactgttaaacggtgtattgtttGGTTACT
TAATATTTCACGACTTTTGGACACTACAAGGAGCTTTTTAATTGTAAgtg
aaattcccctttttattCACTATCTTTGACGTCATAAACAGTGACGCCAT
TCCCCTTGCAACTTGAAGACATTAGAATTGTTGATTGTTGATGACCCgaa
acttttttctcaaaattttatcaGACTTCATTCAGAAATCTCACAAATCC
TCACAAATTCGTCACAAAGTCAGAAATGAAAAGGCAAGAAAAACCTTGGA
TcacagaaaatattttaaagaaaagcCAATACAAAGACTTTCTGTATGGC
AAATTCATGAAAACAAAATGCACAGAGGTAGAAAGAGAATATCAAGTTGC
TAGACAAGACATAAAGAAGGAGACTAGAAAAAGCCAGTTCCTTTACATGA
GAAACAAATTTTTGAGCACAGGAAAAAACATCAAGAAATTCTGGGAGAAT
ATCAATGCTTTTTTTGgtagaaaaaaaacatctaaatATCCAAACACCAT
GACTTATGAAACCAAAAACATCAGTGGAAATTTCAACATTGCCCAAGCCT
TCAACAATCACTATTCTGAAGTAGCACCTAATCTCATTAAAAAACTACCG
AAAAATTCTGACTCAAATGTTTCGAAATCAGNCTTCAACAATCACTATTC
TGAAGTAGCACCTAATCTCATTAAAAAACTACCGAAAAATTCTGACTCGA
ATGTTTCGAAATCAACACCAGAAAACAATTCAagtttcctttttcaaaaa
acaacaagataCGAAATCTTAACCCTCCTTAACAAACTCGACAACAAGAA
ATCCAAAGATTTATACGATTTTCCAATTGATATTATCAAAGCAACTGCAG
ATTTAATTGCCGAACCACTCTCACACATAATCAATCACTCAATAAAAGGT
GGAGTATTCCCTGAGACACTAAAACATGCAAAAGTTCTCCCTCTGTTTAA
AAAAGGACCTCGAGATGACATCAAAAACTACAGGCCTATCTCCGTACTAC
CCCTGTTTGACAAAGTATTTGAACAGGTAATGCACAAGCGACTATCAAAG
TTTCTCGACAAAAACGAATATCTTGACAAAAACCAACATGGTTTTCAAAA
GGGTAAGTCCACTTCTTCTGCTGTTCTTCAACTGAGTCGAATGATCAAAA
AATCTCTTAAAGCCAAAGAATATGGTTGTGCTATCTTCTTAGATCTTGCC
AAAGCTTTTGACACAGTTAATCACCCTATTCTGCtacaaaaacttcaaag
atCTGGTGTTCGTGGTCCCATCCTAAAGTGGTTCCACAGCTACCTTTCCA
ACCGTCTACAAACAGTGACCATAAATCAAACAAAGTCTGATCCCAAACAT
ATTTCTCATGGAGTTCCACAAGGATCTGTGTTGGGACCCCTTCTATTTTT
GATCTATATAAATGACATCTCTCTAAACACAACTCTTTCAAGCATTCTTT
TCGCAGACGACACTTGCCTATT Run BLAST on NCBI protein sequence of TCONS_00065314-protein >TCONS_00065314-protein ID=TCONS_00065314-protein|Name=TCONS_00065314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
MKRQEKPWITENILKKSQYKDFLYGKFMKTKCTEVEREYQVARQDIKKET
RKSQFLYMRNKFLSTGKNIKKFWENINAFFGRKKTSKYPNTMTYETKNIS
GNFNIAQAFNNHYSEVAPNLIKKLPKNSDSNVSKSXFNNHYSEVAPNLIK
KLPKNSDSNVSKSTPENNSSFLFQKTTRYEILTLLNKLDNKKSKDLYDFP
IDIIKATADLIAEPLSHIINHSIKGGVFPETLKHAKVLPLFKKGPRDDIK
NYRPISVLPLFDKVFEQVMHKRLSKFLDKNEYLDKNQHGFQKGKSTSSAV
LQLSRMIKKSLKAKEYGCAIFLDLAKAFDTVNHPILLQKLQRSGVRGPIL
KWFHSYLSNRLQTVTINQTKSDPKHISHGVPQGSVLGPLLFLIYINDISL
NTTLSSILFADDTCL Run BLAST on NCBI transcript from alignment at scaffold_435:229019..230890 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065314 ID=TCONS_00065314|Name=TCONS_00065314|organism=Clytia hemisphaerica|type=transcript|length=1872bp|location=Sequence derived from alignment at scaffold_435:229019..230890 (Clytia hemisphaerica)
AATAGGCAAGTGTCGTCTGCGAAAAGAATGCTTGAAAGAGTTGTGTTTAG
AGAGATGTCATTTATATAGATCAAAAATAGAAGGGGTCCCAACACAGATC
CTTGTGGAACTCCATGAGAAATATGTTTGGGATCAGACTTTGTTTGATTT
ATGGTCACTGTTTGTAGACGGTTGGAAAGGTAGCTGTGGAACCACTTTAG
GATGGGACCACGAACACCAGatctttgaagtttttgtaGCAGAATAGGGT
GATTAACTGTGTCAAAAGCTTTGGCAAGATCTAAGAAGATAGCACAACCA
TATTCTTTGGCTTTAAGAGATTTTTTGATCATTCGACTCAGTTGAAGAAC
AGCAGAAGAAGTGGACTTACCCTTTTGAAAACCATGTTGGTTTTTGTCAA
GATATTCGTTTTTGTCGAGAAACTTTGATAGTCGCTTGTGCATTACCTGT
TCAAATACTTTGTCAAACAGGGGTAGTACGGAGATAGGCCTGTAGTTTTT
GATGTCATCTCGAGGTCCTTTTTTAAACAGAGGGAGAACTTTTGCATGTT
TTAGTGTCTCAGGGAATACTCCACCTTTTATTGAGTGATTGATTATGTGT
GAGAGTGGTTCGGCAATTAAATCTGCAGTTGCTTTGATAATATCAATTGG
AAAATCGTATAAATCTTTGGATTTCTTGTTGTCGAGTTTGTTAAGGAGGG
TTAAGATTTCGtatcttgttgttttttgaaaaaggaaactTGAATTGTTT
TCTGGTGTTGATTTCGAAACATTCGAGTCAGAATTTTTCGGTAGTTTTTT
AATGAGATTAGGTGCTACTTCAGAATAGTGATTGTTGAAGNCTGATTTCG
AAACATTTGAGTCAGAATTTTTCGGTAGTTTTTTAATGAGATTAGGTGCT
ACTTCAGAATAGTGATTGTTGAAGGCTTGGGCAATGTTGAAATTTCCACT
GATGTTTTTGGTTTCATAAGTCATGGTGTTTGGATatttagatgtttttt
ttctacCAAAAAAAGCATTGATATTCTCCCAGAATTTCTTGATGTTTTTT
CCTGTGCTCAAAAATTTGTTTCTCATGTAAAGGAACTGGCTTTTTCTAGT
CTCCTTCTTTATGTCTTGTCTAGCAACTTGATATTCTCTTTCTACCTCTG
TGCATTTTGTTTTCATGAATTTGCCATACAGAAAGTCTTTGTATTGgctt
ttctttaaaatattttctgtgATCCAAGGTTTTTCTTGCCTTTTCATTTC
TGACTTTGTGACGAATTTGTGAGGATTTGTGAGATTTCTGAATGAAGTCt
gataaaattttgagaaaaaagtttcGGGTCATCAACAATCAACAATTCTA
ATGTCTTCAAGTTGCAAGGGGAATGGCGTCACTGTTTATGACGTCAAAGA
TAGTGaataaaaaggggaatttcacTTACAATTAAAAAGCTCCTTGTAGT
GTCCAAAAGTCGTGAAATATTAAGTAACCaaacaatacaccgtttaacag
tttcgccatctccaccgtagaggcggtaggtaaaaatgctcactttagta
ctgtggaaggttagagaaatgtaaacattgccatttttttNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatttgaacatgatattaatg
acaattttatgtatctctcctgaaaatttcacaaaaattcatcaagagga
aaagaagttatgattaaaaggagttctttacctaccatttctctgctggg
tttccttatgagaactggatgtttacctaccattttttacggggagagtg
aagtttcccgtggttgccaaaatcaaaacaatggcaaattgttcatacgc
gtgcgcagtcgacactgttaaa Coding sequence (CDS) from alignment at scaffold_435:229019..230890 >TCONS_00065314 ID=TCONS_00065314|Name=TCONS_00065314|organism=Clytia hemisphaerica|type=CDS|length=1245bp|location=Sequence derived from alignment at scaffold_435:229019..230890 (Clytia hemisphaerica)
TAGGCAAGTGTCGTCTGCGAAAAGAATGCTTGAAAGAGTTGTGTTTAGAG
AGATGTCATTTATATAGATCAAAAATAGAAGGGGTCCCAACACAGATCCT
TGTGGAACTCCATGAGAAATATGTTTGGGATCAGACTTTGTTTGATTTAT
GGTCACTGTTTGTAGACGGTTGGAAAGGTAGCTGTGGAACCACTTTAGGA
TGGGACCACGAACACCAGatctttgaagtttttgtaGCAGAATAGGGTGA
TTAACTGTGTCAAAAGCTTTGGCAAGATCTAAGAAGATAGCACAACCATA
TTCTTTGGCTTTAAGAGATTTTTTGATCATTCGACTCAGTTGAAGAACAG
CAGAAGAAGTGGACTTACCCTTTTGAAAACCATGTTGGTTTTTGTCAAGA
TATTCGTTTTTGTCGAGAAACTTTGATAGTCGCTTGTGCATTACCTGTTC
AAATACTTTGTCAAACAGGGGTAGTACGGAGATAGGCCTGTAGTTTTTGA
TGTCATCTCGAGGTCCTTTTTTAAACAGAGGGAGAACTTTTGCATGTTTT
AGTGTCTCAGGGAATACTCCACCTTTTATTGAGTGATTGATTATGTGTGA
GAGTGGTTCGGCAATTAAATCTGCAGTTGCTTTGATAATATCAATTGGAA
AATCGTATAAATCTTTGGATTTCTTGTTGTCGAGTTTGTTAAGGAGGGTT
AAGATTTCGtatcttgttgttttttgaaaaaggaaactTGAATTGTTTTC
TGGTGTTGATTTCGAAACATTCGAGTCAGAATTTTTCGGTAGTTTTTTAA
TGAGATTAGGTGCTACTTCAGAATAGTGATTGTTGAAGNCTGATTTCGAA
ACATTTGAGTCAGAATTTTTCGGTAGTTTTTTAATGAGATTAGGTGCTAC
TTCAGAATAGTGATTGTTGAAGGCTTGGGCAATGTTGAAATTTCCACTGA
TGTTTTTGGTTTCATAAGTCATGGTGTTTGGATatttagatgtttttttt
ctacCAAAAAAAGCATTGATATTCTCCCAGAATTTCTTGATGTTTTTTCC
TGTGCTCAAAAATTTGTTTCTCATGTAAAGGAACTGGCTTTTTCTAGTCT
CCTTCTTTATGTCTTGTCTAGCAACTTGATATTCTCTTTCTACCTCTGTG
CATTTTGTTTTCATGAATTTGCCATACAGAAAGTCTTTGTATTGgctttt
ctttaaaatattttctgtgATCCAAGGTTTTTCTTGCCTTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065314-exon-scaffold_435-1491911889:229019..230890 | TCONS_00065314-exon-scaffold_435-1491911889:229019..230890 | Clytia hemisphaerica | exon |
| TCONS_00065314-exon-scaffold_435-1510915933:229019..230890 | TCONS_00065314-exon-scaffold_435-1510915933:229019..230890 | Clytia hemisphaerica | exon |
| TCONS_00065314-exon-scaffold_435-1575043694:229019..230890 | TCONS_00065314-exon-scaffold_435-1575043694:229019..230890 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_435 | supercontig | scaffold_435:229019..230890 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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