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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065330 ID=TCONS_00065330|Name=TCONS_00065330|organism=Clytia hemisphaerica|type=transcript|length=822bp
GGGAAGAACTTTTTTGCGTCGTATTCATGACCTTATGGGCTCCTTACGGA
AACAATCATCCAAGTGTTTGTTGAGTGAGGAGTTTTTTAAGGACATTTCT
TGGTGGTTGGATTTCCTTGAGATTTTTAATGGTCAGTGTTCCTTTCATGG
CACTAGACCTGTTACTAACATCCACACGGATGCCTGTACAACTGGCATCg
gagcagtttttgaaaatgactGGTTCTATTCTAACTTGTTGGTTGATGCT
CCTGCCCTTGCAGGCTTGCACATCAACTACAAGGAAGCGCTTTGCATTGT
TTTTGCCTTGGAATGCTGGGCACCTTACTTGTGTAATAAGGTTGTCCATA
TTTACTGTGACAACACGGCTGCAGTtggaatgttgaataagggatCATCT
CGCAACCCGCTCATGATGACTTACCTCAGACGTCTGTTCTGGTGTTCTGC
CACCTATAACTTTCGCCTAAAAGTTTTTCATGTGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGCCGGGAGTCCAAAATGTTGTTGC
TGATCATGTATCTCGACTCCATGAGCATGCACATCTTGCAGCCTTTCTCC
AGTATCTTTGTGACTATTTTGGTCAGTCTGCTTCCACTGATAATGTTGTC
TGGCACATGTCTGTGAACTGTTTCTGTTTTCTTCTTGGCTTGCATGGCTC
CGGCTCACGTTCACTCTGCTTTTTAGAGTTTGCATCTTCGCTGCTGGCAG
ATGTGCAGTTCTATCGTGAAGCCACCTATGCTATCAATACCCGCAAGGCC
TACCGTACTCACCGCAAGGTCT Run BLAST on NCBI protein sequence of TCONS_00065330-protein >TCONS_00065330-protein ID=TCONS_00065330-protein|Name=TCONS_00065330-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
GRTFLRRIHDLMGSLRKQSSKCLLSEEFFKDISWWLDFLEIFNGQCSFHG
TRPVTNIHTDACTTGIGAVFENDWFYSNLLVDAPALAGLHINYKEALCIV
FALECWAPYLCNKVVHIYCDNTAAVGMLNKGSSRNPLMMTYLRRLFWCSA
TYNFRLKVFHVXXXXXXXXXXXXXXAGSPKCCC Run BLAST on NCBI transcript from alignment at scaffold_437:23053..23874 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065330 ID=TCONS_00065330|Name=TCONS_00065330|organism=Clytia hemisphaerica|type=transcript|length=822bp|location=Sequence derived from alignment at scaffold_437:23053..23874 (Clytia hemisphaerica)
AGACCTTGCGGTGAGTACGGTAGGCCTTGCGGGTATTGATAGCATAGGTG
GCTTCACGATAGAACTGCACATCTGCCAGCAGCGAAGATGCAAACTCTAA
AAAGCAGAGTGAACGTGAGCCGGAGCCATGCAAGCCAAGAAGAAAACAGA
AACAGTTCACAGACATGTGCCAGACAACATTATCAGTGGAAGCAGACTGA
CCAAAATAGTCACAAAGATACTGGAGAAAGGCTGCAAGATGTGCATGCTC
ATGGAGTCGAGATACATGATCAGCAACAACATTTTGGACTCCCGGCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACATGAAAAAC
TTTTAGGCGAAAGTTATAGGTGGCAGAACACCAGAACAGACGTCTGAGGT
AAGTCATCATGAGCGGGTTGCGAGATGatcccttattcaacattccaACT
GCAGCCGTGTTGTCACAGTAAATATGGACAACCTTATTACACAAGTAAGG
TGCCCAGCATTCCAAGGCAAAAACAATGCAAAGCGCTTCCTTGTAGTTGA
TGTGCAAGCCTGCAAGGGCAGGAGCATCAACCAACAAGTTAGAATAGAAC
CagtcattttcaaaaactgctccGATGCCAGTTGTACAGGCATCCGTGTG
GATGTTAGTAACAGGTCTAGTGCCATGAAAGGAACACTGACCATTAAAAA
TCTCAAGGAAATCCAACCACCAAGAAATGTCCTTAAAAAACTCCTCACTC
AACAAACACTTGGATGATTGTTTCCGTAAGGAGCCCATAAGGTCATGAAT
ACGACGCAAAAAAGTTCTTCCC Coding sequence (CDS) from alignment at scaffold_437:23053..23874 >TCONS_00065330 ID=TCONS_00065330|Name=TCONS_00065330|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_437:23053..23874 (Clytia hemisphaerica)
TCAGCAACAACATTTTGGACTCCCGGCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCACATGAAAAACTTTTAGGCGAAAGTTATAG
GTGGCAGAACACCAGAACAGACGTCTGAGGTAAGTCATCATGAGCGGGTT
GCGAGATGatcccttattcaacattccaACTGCAGCCGTGTTGTCACAGT
AAATATGGACAACCTTATTACACAAGTAAGGTGCCCAGCATTCCAAGGCA
AAAACAATGCAAAGCGCTTCCTTGTAGTTGATGTGCAAGCCTGCAAGGGC
AGGAGCATCAACCAACAAGTTAGAATAGAACCagtcattttcaaaaactg
ctccGATGCCAGTTGTACAGGCATCCGTGTGGATGTTAGTAACAGGTCTA
GTGCCATGAAAGGAACACTGACCATTAAAAATCTCAAGGAAATCCAACCA
CCAAGAAATGTCCTTAAAAAACTCCTCACTCAACAAACACTTGGATGATT
GTTTCCGTAAGGAGCCCATAAGGTCATGAATACGACGCAAAAAAGTTCTT
CC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065330-exon-scaffold_437-1491911889:23053..23874 | TCONS_00065330-exon-scaffold_437-1491911889:23053..23874 | Clytia hemisphaerica | exon |
| TCONS_00065330-exon-scaffold_437-1510915933:23053..23874 | TCONS_00065330-exon-scaffold_437-1510915933:23053..23874 | Clytia hemisphaerica | exon |
| TCONS_00065330-exon-scaffold_437-1575043694:23053..23874 | TCONS_00065330-exon-scaffold_437-1575043694:23053..23874 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_437 | supercontig | scaffold_437:23053..23874 . |
Blast
The following BLAST results are available for this feature:
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