TCONS_00065334 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065334
Unique NameTCONS_00065334
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1083

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065334 ID=TCONS_00065334|Name=TCONS_00065334|organism=Clytia hemisphaerica|type=transcript|length=1083bp
aTTACGTTATTTTCTCCTTCTTTCAATTGAGATCAGGCCAAAACAATTAG
AAATCTATCGTCAATCAATCGAAAAAATTTCAACTATTTCATAAATAAAT
CTATCAATCAATCTCCCAATCAATCAATCTGTCAATCAGTTCAATATGAT
ATCGCTGAAAGAAACTGTCGATTCCCATAAATCTTTTAGACNAGTCAATC
AATCGAAAAAATTTAAACTATTCATAAATAAATCTATCAATCAATCTCCC
AATCAATCAATCTGTCAATCAGTTCAATATGATATCGCTGAAAGAAACTG
TCGAGATTCTCATAAATCGCTTGAATGGTCAAAATTTACCTTTTGAAATA
AATGTAACCTTTATCAAATACATTAAGGAATGTGGATGATAACTAAGATG
ATAAACAAACTCAAGCATTACCTTGGAAACTAATGCCACTCCAATTAAAC
ACATCCAAGCAACCACACTTGCATACCAAATTTGATCTTCTCTGCTTAAA
GATTCACCTAGTCTTGGATCGGTATCGATACAAAAACATCCATTACACAA
AGTAGGTGCATTGTATTGGTTGAATTTGGGTGATATTGATGAAAACAGAA
TCAATTTGCCCTCACACCAAACGAtaatcatttccaaatgaaacaTATCT
CTTTACTGTTCCACGTATCTTTATCGCCAGAGATGTCGCATGTTTAGCTA
GGTAACGATAGACAAAATCAATTCAACGGGTATTTTAAAATGGTGGTAAA
ATCTGCATTAAATGAAATATCTAAAAAGAAAGTTATGggcttaaataaaa
aaaatttccttcagcaTCTGAAGAAAGGCGAGAGAGTACTATCTTGTGAA
GCAAAGAAAAgacaattcaataaaggatgatAAGTTAACAACTACAGAAC
ACAGACAACTTTCTGTGTAAAGTTCGCTTTAAAATACACGAATTTAAATA
AATAAACCCAAACTGTTACCAAATtcatgtttgattttatttggtaaaat
agaatgatgtctaataaccaaaataaaatcagcaacaatttaaaaagtag
atgaaaaaggcattaaaaggCATCTTGCCGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_439:7864..12259+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065334 ID=TCONS_00065334|Name=TCONS_00065334|organism=Clytia hemisphaerica|type=transcript|length=4396bp|location=Sequence derived from alignment at scaffold_439:7864..12259+ (Clytia hemisphaerica)
aTTACGTTATTTTCTCCTTCTTTCAATTGAGATCAGGCCAAAACAATTAG
AAATCTATCGTCAATCAATCGAAAAAATTTCAACTATTTCATAAATAAAT
CTATCAATCAATCTCCCAATCAATCAATCTGTCAATCAGTTCAATATGAT
ATCGCTGAAAGAAACTGTCGATTCCCATAAATCTTTTAGACNAGTCAATC
AATCGAAAAAATTTAAACTATTCATAAATAAATCTATCAATCAATCTCCC
AATCAATCAATCTGTCAATCAGTTCAATATGATATCGCTGAAAGAAACTG
TCGAGATTCTCATAAATCGCTTGAATGGTCAAAATTTACCTTTTGAAATA
AATGTAACCTTTATCAAATACATTAAGGAATGTGGATGATAACTAAGATG
ATAAACAAACTCAAGCATTACCTTGGAAACTAATGCCACTCCAATTAAAC
ACATCCAAGCAACCACACTTGCATACCAAATTTGATCTTCTCTGCTTAAA
GATTCACCTAGTCTTGGATCGGTATCGATACAAAAACATCCATTACACAA
AGTAGGTACATTGTATTGGTTGAATTTGGGTGATATTGATGAAAACAGAA
TCAATTTGCCCTCACACCAAACGAtaatcatttccaaatgaaacaTTATC
TCTTTACTGTTCCACGTATCTTTATAGCCAAATATGTTGCATGTTTAGCT
AGGTAACGATAGACAAAATCAATTCAACGGATATTTTAAAATGATAGTAA
AATCTGCATTAGATGAAATATCTAAAAAGAAAGTTAGGGgcttaaataaa
aaagatttccttCAGCATCTGAAGAAAGGCGAAAGAGTACTATCTTGTGA
AGCAAAGAAAAgacaattcaataaaggataatAAGTTAACAACTACAGAA
CACAGACAACTTTCTGTGTAAAGTTGGCTTTAAAATACACGAATTTAAAT
AAATAAACCCAAACTGTTACCAAATTCATGTTTGATTTTANAATACACGA
ATTTAAATAAATAAACCCAAACTGTTACCAAATTCATGTTTGATCGTTTT
ATTTGGTAAAATAGAATGATGTCTAATAACTAAAATGAAATCagcaacaa
tttaaaaagtagatgaaaaaggcattaaaaggCATCTTGCCGGTGACACT
CTTTTTGAGTCCGGCAATCCATTAATTACAGCCTGCAATAAGCTGTTAGA
CAGTTTGCTGGCAACATTTGTGGAAATCCtatttttgaaaaggatttGGT
TTAAAGGGAGACTTTTGCTGGAATTTGCCGGCAACTATAGAAAATAACTG
GCAACTTTCCGGCAATGATAAAAACTATTCAGTAATATGCCGACAAAAAA
AAATCGCCGGCACTTTGCTaacaacaaacaaaattgaTTACATCTTTTGC
CGGCATTTATCCCTGTATGTCATCCGGCAATTTGCCAACAAAAACAAAGC
TGGCTAGTTGCCGACAAGAAGTTCATGTCTTTAGAATCGCTTGAATGGTC
AAAATTTACCTTTTGAAATAAATGTAACCTTTATCAAATACATTAAGGAA
TGTGGATGATAACTAAGATGATAAACAAACTTAAGCATTACCTTGGAAAC
TAATGCCACTCCAATTAAACACNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTGCATTGTATTGGTTGAATTTGGGTGATATTGATGAAAACAG
AATCAATTTGCCCTCACACCAAACGAtaatcatttccaaatgaaacaTAT
CTCTTTACTGTTCCACGTATCTTTATCGCCAGATATGTTGCATGTTTAGC
TAGGTAACGATAGACAAAATCAATTCAACGGATATTTTAAAATGATGGTA
AAATTTGCATTAAATAAAATAGTTGGCAATTTGCCGGCAATGAAAAAAAC
TATTCGGTAATATTGCCGACAACAAAGTAAAATAGCCGGCACTTTGCCGA
CAACcaagaaaatttgattgaatCTTTTGCCGGCACTTATCCCCGTATGT
CATCCTACAATTTGCGGACAAAAACAAAGCTGGCTAGTTGCCGGCAAGAA
GTTTTCGATTGACAAAATCAATCCAACGGATAATATGATGTGCTGCATAA
GTCTGCATTAAATGAAACATCTAAAAAGAAAGTTATGggcttaaataaaa
aaatttccttcagcaTCTGAAGAAAGGAAAgacaattcaataaaggatga
tAAGTTAACAACTACAGAACACAGACAACTTTCTGTGTAAAGTTCGCTTT
AAAATACACGAATTTAAATAAATAAACCCAAACTGTTACCAAATTcatgt
ttcattttatttggtaaaatagaatgatgtctaataaccaaaataaaatc
agcaacaatttaaaaagtagatgaaaaaggcattaaaaggCATCTTGCCG
GTGACACTCTTTTAGAGTCCGGCAATGCATTAATTACAGCCAGCAATAAG
CTGTTAGACAGTTTGCTGGCAACATTTGTGGAAATCCtatttttaaaaaa
gcatttgGTTTAAAGGGAGACTTTTGCTGGAATCTGCAGGCAACTATATA
AAATAGCTGGCAATTTGCAGGCAATGAAGAAAACTATTCAGTAATATAGT
cgacaacaaagaaaaatagccgGCACTTTGCCGACAACgaagaaaatttg
attgaaacTTTGCCGGCACTTATCCCCGTATGTCATCCTACAATTTGCCA
ACAAAAACAAAGCTGGCTAGTTGCCGGCCAGAAGTTTCGGATTGACAAAA
TCAATCCAACGGATAATATAATAGGCTGCATAAATCTGAATTAAATGAAA
CATCTAAAAAGAAAGTTATGggcttagataaaaaaaatttccttcagcat
ctgaagaaagaaaagacaattcaataaaggatgatAAGTGAACAACTACG
ATCACAGAACACAGACAACTTTCTGTGTAAAGTTGGCTATAAAATACACG
AATTTAAATGAATAAACCCAAGCTGTTACCATATtcatgtttgattttat
ttggtaAAGTAGAAGGATGTCtaataaccaaaataaaatcagcgacaatt
taaaaagtagatgaaaaaggcattaaaaggCATCTTCCCAGTGACACTCT
TTTTGAGTCCAGCAATCCATTAATTACAGCCTGCAATAAGCTGTTAGACA
GTTTGCTGGCAACATTTGTGTAAatcctatttttagaaaaggattTGGTT
TAAAGGGAGACTTTTGCTGGAATCTGCCGGTAACTATAGAAAAAAACTGG
CAATTTTCAGGCAATGAAGAAAACTATTCAGTAATATGccgacaaaaaga
aaaatcaccGGCACTTTGCTAACAGCAAAGAAAATTGATTACATCTTTTG
CCGGCATTTATCCCTGTATGTCATCCGGCAATTTGCCAACAAAAACAAAG
CTGGCCAGTTGCCGACAAGAAGTTCATGTCTTTAGAATCGCTTGAATGGT
CAAAATTTACCTTTTGAAATAAATGTAACCTTTATCAAATACATTAAGGA
ATGTGGATGATAACTAAGATGATAAACAAACTTAAGCATTACCTTGGAAA
CTAATGCCACTCCAATTAAACACATCGAAGCAACCAATATTTGATCTTCT
CTGCTTAAAGATTCACCTAGTCTTGGATCGGTATCGATACAAAAACATCC
ATTACACAAAGTAGGTAGGTGCATTGTATTGGTTGAATTTGGGTGATATT
GATGAAAACAGAATCAATTTGCCCTCACACCAAACGAtaatcatttccaa
atgaaacaTATCTCTTTACTGTTCCACGTATCTTTATCGCCAGAGATGTC
GCATGTTTAGCTAGGTAACGATAGACAAAATCAATTCAACGGGTATTTTA
AAATGGTGGTAAAATCTGCATTAAATGAAATATCTAAAAAGAAAGTTATG
ggcttaaataaaaaaaatttccttcagcaTCTGAAGAAAGGCGAGAGAGT
ACTATCTTGTGAAGCAAAGAAAAgacaattcaataaaggatgatAAGTTA
ACAACTACAGAACACAGACAACTTTCTGTGTAAAGTTCGCTTTAAAATAC
ACGAATTTAAATAAATAAACCCAAACTGTTACCAAATtcatgtttgattt
tatttggtaaaatagaatgatgtctaataaccaaaataaaatcagcaaca
atttaaaaagtagatgaaaaaggcattaaaaggCATCTTGCCGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040968XLOC_040968Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065334-exon-scaffold_439-1491911889:7864..8414TCONS_00065334-exon-scaffold_439-1491911889:7864..8414Clytia hemisphaericaexon
TCONS_00065334-exon-scaffold_439-1510915933:7864..8414TCONS_00065334-exon-scaffold_439-1510915933:7864..8414Clytia hemisphaericaexon
TCONS_00065334-exon-scaffold_439-1575043694:7864..8414TCONS_00065334-exon-scaffold_439-1575043694:7864..8414Clytia hemisphaericaexon
TCONS_00065334-exon-scaffold_439-1491911889:11728..12259TCONS_00065334-exon-scaffold_439-1491911889:11728..12259Clytia hemisphaericaexon
TCONS_00065334-exon-scaffold_439-1510915933:11728..12259TCONS_00065334-exon-scaffold_439-1510915933:11728..12259Clytia hemisphaericaexon
TCONS_00065334-exon-scaffold_439-1575043694:11728..12259TCONS_00065334-exon-scaffold_439-1575043694:11728..12259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:7864..12259 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.0679	12.3725	7.58376	5.65905	17.4336	13.33	21.5769	23.5089	27.3659	20.8902	29.6406	38.3166	18.3845	21.1426	12.0498	12.0529	7.03528	6.5877	15.8897	10.283	8.03636	4.40731	6.40471	8.36761	3.45786	4.84994	7.40545	5.85471	5.4905	5.50085
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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