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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065393 ID=TCONS_00065393|Name=TCONS_00065393|organism=Clytia hemisphaerica|type=transcript|length=155bp
aaaaaaaatttttgatcacTCATCAtacccaaaCATTTGCACGACGTTCG
AGTGCTACAAAACATTGTTCACCAGCTTCAAACGTCGGGCCGGGAAGaca
aaaatgaaagaagaagGCTTTTGAGAGAGCTTCAGacactATTTATTGTT
TTTTC Run BLAST on NCBI transcript from alignment at scaffold_439:83370..86483- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065393 ID=TCONS_00065393|Name=TCONS_00065393|organism=Clytia hemisphaerica|type=transcript|length=3114bp|location=Sequence derived from alignment at scaffold_439:83370..86483- (Clytia hemisphaerica)
AAAAAAAATTTTTGATCACTCATCATACCCAAAGTGAGCAAAAACCGAAA
ATTTCTTTTGTTCTTATAAATAGCTATTGTATTCTATAACAAAGGCTTTA
GAAAAAAGTTGCCTTATCAGCAATCTTATTGGTTAAAGAAAGAGTACAAT
ATATCTTGTATCTTACATGTACAAAATATAAATTGACGAAAAGATGTTGT
TGCTTTGTAACGGTAGAAGCAATCTAACGTCACTTTGCTACAAAAGTGTC
CTGCGCTTTTTATTTATTATGTGCTTTTTTTATCAGACATTGAGAAATAT
TGCACTCGCTCCGGATTTTCCATGTAAAAATCCTAAAGGCTCGAAAAATA
TTGTACGGAGAAATCTCAGAACTCATAAAATATTTCTCATAACATTTTAA
GAACATTTTTAGGCTTCAAATCCAAAAAACTAAGAACATCCGAAGGCTTC
GAAAATTTTTGACGTTCGTATAAAAAAAACGTGTATTGTACTCGCAACTG
TCCGATAACTATTACGTATTAGAAAAGTGTCAATTTTTGTGACACCTTAC
TGTCAGAAATGTCATCATGCTTAAGGTGTGAAAATTTTTAGGTGTCAAAA
TTTTTAGGTGTCAAAATTTTTAGGTGTCAAATTCTTTTTATTTTGAAGCT
AATGAAAGTTAGGAATTTACAGAAAATCTCATGTCAAAAGCTCTATTATT
TCAGGAGCTATTACCATTAATCTGACCTCAGAACAGAAACAGCCCCCCCC
CCTAGGACGAATAGACTTGAAGCATAACTACGATGGCCTATTTAGATAAA
TGATTTTCTTGAAAGTGAATAAAACAAAAACATTTATCAAATTATCTGTC
AGTAAAATCGCAAATGCGAATAACTTTTGATACAATCTGATTGTGCTTTT
GTGGTCGAACATAATCGTGAATATAAATCTACAATTAAAAAAACATTCGA
AGATGATGAATGAAGAAGAACCAAATTGAACCTAGTAAACGGAACGGATT
CAGCTTTTTCAGTCCGGTTTGTGGGAAAAGAGTAGAATTTAAACTAGCAT
TCAAAATGCTTTCTAAAGTATTAAAGATCGCTAAAAACCTACTTTGGTTT
GACTTTAGGGATTGAAACATTTTGAGGCTCAGATTGTAGATAATTAATTT
AGTGTCCATGAAAATTGAAATATAATACACCTTTTCCACTGTAGCCGCCA
ATTACCGCACGGGCATTTATTTTTCCGTCCCAGTCCTTTTGTCGCTCCTA
TAGACAATAGAAAAATGTGTCAAAAAAGGATTGGATCGATTTTAGGAGGA
ATAATTAAAAAATTAAGCGGCAGGCGCCTTACCGCGCGACTACGGTCGAA
AAGGTGTATTTGATTTCAATTTCCATCAATGTCAAAATATGTTGGGATTT
TGGAAGGGTCGTACCCCCGTGACCACTTTTTGATTTTACTGATGGACGTG
ATAGTCCTTTCATGAGTGCTCTCAGAATCATAAAAAAACGAGCTAGGTAC
AAGTTAGAATTTCTTGGTATTTTTCTGTTTTTCAGAATTTGAAATTCAGG
CGATTTCAGCATTTCCTCTTTTATTCATTGGATCTTCGACTTGGGGGGGG
GGGGGGGGGGGGGGGGGGGGTTTCAGGCTATATCCTTAGCCTTATTGGAG
TATTTTTGAGCTTTTCATTTTTGAATTCACTTATTATGATTTGTGTCATT
TTGATTGTTAAACTTTACCAATACAATGAAATTGCTTGTACATCCTTTGC
CCTGAGATTTTAAAATAACATATTTCTTTATATCATAGCATTTGCACGAC
GTTCGAGTGCTACAAAACATTGTTCACCAGCTTCAAACGTCGGGCCGGGT
AAGTTTCCTATTCCTATTTTAATTTCATTCTTTTTAATCATAATCATTTT
CTTATATTATTTTCCCGATGAAGAAAAAGTAAAGTTCTACGGGACTTTTC
TGAAATTGATAAATAAATTTATCCAACTACGTTTTCCCAGCTGAACAAAA
ATTGACAAATAAAATTTCCTCAGAACGAACCAGCTTTGATCTTGATTTAG
AATTTCCGGATATGATTTTTTGATCTACATTTTCAGCTGGAGTACTTATG
CCTTCAGGACAGTGACTCTGTTTATAATGAATTTAATTAATCTCCAAATA
TATTCGATTGATAGGAAGACAAAAATGAAAGAAGAAGGCTTTTGAGAGAG
CTTCAGGTATACTAATTTTGACATATTATGCTATTTGCTCTACTGAAAGA
GGTGTGTGAGTTAACAGTGTCATATTTACTGCCCGGGGGTGTACTAGGGC
AAAATAGGTTACGGGGATGCGCCACTGGTCAGCGTACCTTTTTAACCTCC
ACGAGTCCCAGGTAGGGTCACAAAAACACCAAAATAGAAAAATCAGTCAC
TTGTAGTCACTTTTTTTGGAAAATTTGGGGAAAAAGTAGAAAATTTAAGA
AAATTTTGGAATTTCAGTCCCATTTAGGGTCACTTTTTTCGCAAATTTCG
GCAAAATTAAAACGAGTCCCATGTAGAGTCCATTTTTCAAACCTCAGCGG
AGCACCCCCGTCGGTCAGCAAGGGTAGTACTCCCCAGAATCTTTTGGGGA
AAAGAATGTTTCTCCGATAATCTTTTTGCATAGAAGGATAAATTTCACCA
TTCTGAAAAACTACGTCTCTTGCACACCGGATGTATTTATTTGACTCCCC
TATCAAGTTAGTGTGAAGTTAACCAAAAATTCTGGCGTCATAACGTTATG
ATGAAATGTCAAAATTATAAACTTTTTGTTGGAAATGATTATCTTTTCAT
CTGTGAAACATTCTTTACCTTTTGACCCAAAAGACATTACACGTAAAAGG
ATTGCTTTCTCGAGATTTCTAAGCCAATCAAAATACGAGCACAAAAACTG
TAAGGTCTCCTCTGGCCTCTGGCGACCAAACCGTTTACTGCAGCCATCGC
CATCATAAAAATCAAAATAGATTGGGCTCAGCAAAACGGGTTTTTGTCGC
CAGGTTTCCAGGCTAGTGTCAAGTTTATCGTTTTCTTAGTTCATTTTTCC
ATGTCTAAATCTGAGAAAATATAAATTGTCTACATACTTTTGAGACACTA
TTTATTGTTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065393-exon-scaffold_439-1575043694:86451..86483 | TCONS_00065393-exon-scaffold_439-1575043694:86451..86483 | Clytia hemisphaerica | exon |
| TCONS_00065393-exon-scaffold_439-1575043694:84636..84695 | TCONS_00065393-exon-scaffold_439-1575043694:84636..84695 | Clytia hemisphaerica | exon |
| TCONS_00065393-exon-scaffold_439-1575043694:84278..84319 | TCONS_00065393-exon-scaffold_439-1575043694:84278..84319 | Clytia hemisphaerica | exon |
| TCONS_00065393-exon-scaffold_439-1575043694:83370..83389 | TCONS_00065393-exon-scaffold_439-1575043694:83370..83389 | Clytia hemisphaerica | exon |
| TCONS_00065393-exon-scaffold_439-1510915933:86451..86483 | TCONS_00065393-exon-scaffold_439-1510915933:86451..86483 | Clytia hemisphaerica | exon |
| TCONS_00065393-exon-scaffold_439-1510915933:84636..84695 | TCONS_00065393-exon-scaffold_439-1510915933:84636..84695 | Clytia hemisphaerica | exon |
| TCONS_00065393-exon-scaffold_439-1510915933:84278..84319 | TCONS_00065393-exon-scaffold_439-1510915933:84278..84319 | Clytia hemisphaerica | exon |
| TCONS_00065393-exon-scaffold_439-1510915933:83370..83389 | TCONS_00065393-exon-scaffold_439-1510915933:83370..83389 | Clytia hemisphaerica | exon |
| TCONS_00065393-exon-scaffold_439-1491911889:86451..86483 | TCONS_00065393-exon-scaffold_439-1491911889:86451..86483 | Clytia hemisphaerica | exon |
| TCONS_00065393-exon-scaffold_439-1491911889:84636..84695 | TCONS_00065393-exon-scaffold_439-1491911889:84636..84695 | Clytia hemisphaerica | exon |
| TCONS_00065393-exon-scaffold_439-1491911889:84278..84319 | TCONS_00065393-exon-scaffold_439-1491911889:84278..84319 | Clytia hemisphaerica | exon |
| TCONS_00065393-exon-scaffold_439-1491911889:83370..83389 | TCONS_00065393-exon-scaffold_439-1491911889:83370..83389 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:83370..86483 - |
Blast
The following BLAST results are available for this feature:
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