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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065354 ID=TCONS_00065354|Name=TCONS_00065354|organism=Clytia hemisphaerica|type=transcript|length=1805bp
ataAAAACAACACAAGAAGCAAGCTTTTTATTCCAATCTGATATCCACTA
GAAAAATGTAAGAATTCACTAACCTTTTCATGATGCTTACGAGTTCTTGT
TCATTGATATTATCAATATCTGTTTCCATTTGATCAGTGCTGAAGATACT
ATGTAAGGACTTTGATTTCCATTCTCGACCTTTATCACCTTTCTTTAACC
TCCTAGGTGACACTTTGTTATCTCCGTCATCTTTTGATCTCAGAGTCGTC
AGCTTCTTTGGTGCTTTATCTACATCATCAACAGAACGAAGGGATCCACG
GACATCCAACATTTCTTGGACATCTTGATGGATTTTATCTTCCTCGGGAT
CTAAACCATCCAAGAATTCATCCTCCATGTCACACTCAATGCTGTCTATT
AAACTTTGTGAACTTGAGCTCAATCTATAGTCACTAGAGAATCTCCAGGA
GTCGTTTCTCTTTACTTTCCCCTTTCGTTTATTAACTGGTGACTCTTCAT
CTAGCAACAATTTTTTGGCAACGTTCAATGGTTCTGTCTGTTCACCGATA
ACAGCTTCCTTTAGATCAATGGTCGTGTCCATGATGTCTCCTTCAGCCAA
AGATAACGTACTCTCGTCCAATATTCTCGGTGCTTCGTTACACTCAGATT
CGATTGTTGAGTCAACTAACTCCTCAACGATTTTAGGGATATTATCTCCC
TTAGGTTGGATTTCTGATACCTCATTCTCGGTATTCTCTTGCTGTTGTAA
CGTATCAACAGTTGAATCAACTAGATCTTCAACCACAATCAGTGGAATAT
TATCTCCCTTAGGTTGGATTTCTGATACCTCATTCTCGGTATTCTCTTGC
TGTTGTAACGTATCAACAGTTGAATCAACTAAATCTTCAACCACAATCAG
TGGAATATTATCTCCCTTATCTTGATCGTTCTTATTATCTCCACAATCCT
CGACATCTGAAATCTGAGGATCATTTTCAACTTCATAGGTCGACTCAACC
ACAATCTCCGTACGAGTTTCAACAATCTCTTCAAAAACTGTTCGTTCTTT
GGCAACTGGTGGAACTCCTTTTCGAGGTGTAGACGAGAGGAAGCCTTCAT
CCTTGGAAAGGTCCAAAGTCTCGTCCAACGTGGCATCCATACGTGAAACG
TCTGTTATTTCTGAATTGTCATTACTTAAACTTTCAGACGTAATATGAAG
CTGGCATTCACTTGAATCAAACGAACTTTCATCGTCGTGTGTTTGGTCCC
TTGAGACATGCGTTAGTTCGGGTGTATCAGGGATCTCACTATCAGAGATT
GAACTGAGTGACATATCTAACGTGTCAATAGAGTCACTACTCTTATGTTT
AACCAAGATAGCATCTTTTAAATGTCCATCGAACGTTTCATCGTGGATGC
TTAATGCGTCTTGAAGAGATCTACTGGTTGATGATTGGCTCTTGAATGGA
GAGCTGTTCGCTGATTGGCTCTTCATCGGATTACTACTTTCTAATTGGGT
TTCCTTCGAAATTGGTGGCTTCTCATTGGTTATTGTATCGATCATTGCCA
TGCAACTGACATCATCTTTAGCTGCATTGACTTCAAAGTCAGCCAAAGAA
CCCACAACACTTTGTAGGTTTTCAGTCTTGTTAGGGTCTTGAGTTTTGGG
TGCATAAGCATCACAGACATCAGAAAGAACAGCGAATAGACTAGGATCTT
GTTTCATTGTGTGCTCCTCCACTTGTTGTTGTTGCTTGCTCATCTCTTCG
ACATTTTCTGGCTGGTTTGTTTCTTCTTTCGCCACTTCAGATGGTACCtg
agaaa Run BLAST on NCBI transcript from alignment at scaffold_439:264991..266850+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065354 ID=TCONS_00065354|Name=TCONS_00065354|organism=Clytia hemisphaerica|type=transcript|length=1860bp|location=Sequence derived from alignment at scaffold_439:264991..266850+ (Clytia hemisphaerica)
ataAAAACAACACAAGAAGCAAGCTTTTTATTCCAATCTGATATCCACTA
GAAAAATGTAAGAATTCACTAACCTTTTCATGATGCTTACGAGTTCTTGT
TCATTGATATTATCAATATCTGTTTCCATTTGATCAGTGCTGAAGATACT
ATGTAAGGACTTTGATTTCCATTCTCGACCTTTATCACCTTTCTTTAACC
TCCTAGGTGACACTTTGTTATCTCCGTCATCTTTTGATCTCAGAGTCGTC
AGCTTCTTTGGTGCTTTATCTACATCATCAACAGAACGAAGGGATCCACG
GACATCCAACATTTCTTGGACATCTTGATGGATTTTATCTTCCTCGGGAT
CTAAACCATCCAAGAATTCATCCTCCATGTCACACTCAATGCTGTCTATT
AAACTTTGTGAACTTGAGCTCAATCTATAGTCACTAGAGAATCTCCAGGA
GTCGTTTCTCTTTACTTTCCCCTTTCGTTTATTAACTGGTGACTCTTCAT
CTAGCAACAATTTTTTGGCAACGTTCAATGGTTCTGTCTGTTCACCGATA
ACAGCTTCCTTTAGATCAATGGTCGTGTCCATGATGTCTCCTTCAGCCAA
AGATAACGTACTCTCGTCCAATATTCTCGGTGCTTCGTTACACTCAGATT
CGATTGTTGAGTCAACTAACTCCTCAACGATTTTAGGGATATTATCTCCC
TTAGGTTGGATTTCTGATACCTCATTCTCGGTATTCTCTTGCTGTTGTAA
CGTATCAACAGTTGAATCAACTAGATCTTCAACCACAATCAGTGGAATAT
TATCTCCCTTAGGTTGGATTTCTGATACCTCATTCTCGGTATTCTCTTGC
TGTTGTAACGTATCAACAGTTGAATCAACTAAATCTTCAACCACAATCAG
TGGAATATTATCTCCCTTATCTTGATCGTTCTTATTATCTCCACAATCCT
CGACATCTGAAATCTGAGGATCATTTTCAACTTCATAGGTCGACTCAACC
ACAATCTCCGTACGAGTTTCAACAATCTCTTCAAAAACTGTTCGTTCTTT
GGCAACTGGTGGAACTCCTTTTCGAGGTGTAGACGAGAGGAAGCCTTCAT
CCTTGGAAAGGTCCAAAGTCTCGTCCAACGTGGCATCCATACGTGAAACG
TCTGTTATTTCTGAATTGTCATTACTTAAACTTTCAGACGTAATATGAAG
CTGGCATTCACTTGAATCAAACGAACTTTCATCGTCGTGTGTTTGGTCCC
TTGAGACATGCGTTAGTTCGGGTGTATCAGGAATTTCACTATCAGAGATT
NTCCCTTGAGACATGCGTTAGTTCGGGTGTATCAGGGATCTCACTATCAG
AGATTGAACTGAGTGACATATCTAACGTGTCAATAGAGTCACTACTCTTA
TGTTTAACCAAGATAGCATCTTTTAAATGTCCATCGAACGTTTCATCGTG
GATGCTTAATGCGTCTTGAAGAGATCTACTGGTTGATGATTGGCTCTTGA
ATGGAGAGCTGTTCGCTGATTGGCTCTTCATCGGATTACTACTTTCTAAT
TGGGTTTCCTTCGAAATTGGTGGCTTCTCATTGGTTATTGTATCGATCAT
TGCCATGCAACTGACATCATCTTTAGCTGCATTGACTTCAAAGTCAGCCA
AAGAACCCACAACACTTTGTAGGTTTTCAGTCTTGTTAGGGTCTTGAGTT
TTGGGTGCATAAGCATCACAGACATCAGAAAGAACAGCGAATAGACTAGG
ATCTTGTTTCATTGTGTGCTCCTCCACTTGTTGTTGTTGCTTGCTCATCT
CTTCGACATTTTCTGGCTGGTTTGTTTCTTCTTTCGCCACTTCAGATGGT
ACCtgagaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065354-exon-scaffold_439-1491911889:264991..266247 | TCONS_00065354-exon-scaffold_439-1491911889:264991..266247 | Clytia hemisphaerica | exon |
| TCONS_00065354-exon-scaffold_439-1510915933:264991..266247 | TCONS_00065354-exon-scaffold_439-1510915933:264991..266247 | Clytia hemisphaerica | exon |
| TCONS_00065354-exon-scaffold_439-1575043694:264991..266247 | TCONS_00065354-exon-scaffold_439-1575043694:264991..266247 | Clytia hemisphaerica | exon |
| TCONS_00065354-exon-scaffold_439-1491911889:266303..266850 | TCONS_00065354-exon-scaffold_439-1491911889:266303..266850 | Clytia hemisphaerica | exon |
| TCONS_00065354-exon-scaffold_439-1510915933:266303..266850 | TCONS_00065354-exon-scaffold_439-1510915933:266303..266850 | Clytia hemisphaerica | exon |
| TCONS_00065354-exon-scaffold_439-1575043694:266303..266850 | TCONS_00065354-exon-scaffold_439-1575043694:266303..266850 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:264991..266850 + |
Blast
The following BLAST results are available for this feature:
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