TCONS_00065364 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065364
Unique NameTCONS_00065364
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065364 ID=TCONS_00065364|Name=TCONS_00065364|organism=Clytia hemisphaerica|type=transcript|length=1350bp
GAATTCAccggcctagaatctagaaatcgagtttattttattttggccAG
CCTACCGTACcaaccaaaaacaaaacaaaacccctGATCATGATAATATT
CCCTTTATTTCCAGCTGATGTTACTGACCGTTTCGACCGTGTATTTTGGT
TCGGTGATTTCAATTTTCGAATACAGAAGTCACGTGAATCAGTTGATCGA
ATCATGAAAAGACATGCGCGAGATCAACCACTCATAATTCGAGAATTACT
AACACATGACCAATTAAATGAGGTTTTCGATCGTGGCAAAATTTTCCATG
GTTTTAAGGAGAATGAGATCACATTCATGCCGACATACAAGTTCGATGTC
AACACTGATGTTTATGATTCATCGCCCAAGAAAAGAGTCCCTTCCTGGAC
GgATCGGATTGTTTACAAATCTCCTCAACTCTCACTTCTCAAATGTTTAT
ATTATAATTCGTGTAACACAATCAAAGTATCAGATCATAGACCTGTTTAT
GGCATTTTCGAATCCGAAGTCGAACCTTATAAAAACAATTTTCAGGTCCA
TGGTGCGACGTTTGACAGAGAAGTTTACGTTGAAGCTAACCTGCGTCGTA
ACGCACCGTCTGGTTCACAAGCGAACAGTCACGTCTGTACAATCCTGTGA
CGTCATGAAAGAGCAAACGGTAAAGGAGATTACTGTGATATTTTGCGGAA
CAATTCTGTTACCTGCCGATCTGTCCAAAGATTTCCCGGGATTTGTAAAA
GCGATGTTGCTAGGCTTGGTAGGATGTCTTCCTTCTCACTCTTATTCTTT
ATTCTTCTGATAAAGAGGTCATCAGAGGTCATGGTAATTGCCAACAATTC
TATAATTTAAGGCCTTGACCTACtaaatttgatttctttcgACGAGACAA
TGTTTCCTGTCTGATAAGAAACTTCTTCATTAGAGGATGACCAGAAgcct
ttttgttgaaaaagactTCCCATTTCAAAATCGGTTccttaaaattacat
ttctatCGAGAAAAGTATCGTTACTTTTATGATTTGAGTCGAAGGTTATC
CCCGAATGGGTAGTGTCCATATTTGTAGGTGTCCAAGCATCTGCTCCAGA
TTGTTGACTTGTTTTTATCCTTATAAAGGAACAAAATATTGTATCGTACA
AAATTATAATTATATATTTGGGTGGAAGTTTTAGGGAATCGTTTGAAAAT
GTTTCTgtgtatattttattttttaggtttttattttgtatattatTACT
GCCATTTGTGAATATAGTGTATTAAAAGATTGAGGCCATCAGATGACCTT
TTGCATTTATCCTacggaaataaagaaaaacagaaaagacTGGATAAAAA
Run BLAST on NCBI

protein sequence of TCONS_00065364-protein

>TCONS_00065364-protein ID=TCONS_00065364-protein|Name=TCONS_00065364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
MIIFPLFPADVTDRFDRVFWFGDFNFRIQKSRESVDRIMKRHARDQPLII
RELLTHDQLNEVFDRGKIFHGFKENEITFMPTYKFDVNTDVYDSSPKKRV
PSWTDRIVYKSPQLSLLKCLYYNSCNTIKVSDHRPVYGIFESEVEPYKNN
FQVHGATFDREVYVEANLRRNAPSGSQANSHVCTIL
Run BLAST on NCBI

transcript from alignment at scaffold_439:328089..331901+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065364 ID=TCONS_00065364|Name=TCONS_00065364|organism=Clytia hemisphaerica|type=transcript|length=3813bp|location=Sequence derived from alignment at scaffold_439:328089..331901+ (Clytia hemisphaerica)
GAATTCAccggcctagaatctagaaatcgagtttattttattttggccAG
CCTACCGTACcaaccaaaaacaaaacaaaacccctGATCATGATAATATT
CCCTTTATTTCCAGCTGATGTTACTGACCGTTTCGACCGTGTATTTTGGT
TCGGTGATTTCAATTTTCGAATACAGAAGTCACGTGAATCAGTTGATCGA
ATCATGAAAAGACATGCGCGAGATCAACCACTCATAATTCGAGAATTACT
AACACATGACCAATTAAATGAGGTTTTCGATCGTGGCAAAATTTTCCATG
GTTTTAAGGAGAATGAGATCACATTCATGCCGACATACAAGTTCGATGTC
AACACTGATGTTTATGATTCATCGCCCAAGAAAAGAGTCCCTTCCTGGAC
GGTATGGAATTCATCTTTATAAATGAGAATTAATTTTTGTCAGAATTgac
tttttgttgattttttgctGGATGCAATCAATGCAattcagattttttga
aatttattgtaTTATAAAAGTTTCAGCCGTTATACAAGTTATTTATTCAT
GTTCTTAATATAAGCAGGAGGCTTGATTAAAGTTAATTGCGATTTGGGAC
CAAATATCTACTGAACTACTAATATTTCTGTTGCACTAAATTGAACAGGC
ATTGTCTTCCCCGTTTTTGCAGTTTGAAGTAATTGCCTGCACAAATGTAT
ATTGCAGGACTTTAACGATTTTCTTTTACTCCCTGATATCGAatatttta
ttctctttttttttaggATCGGATTGTTTACAAATCTCCTCAACTCTCAC
TTCTCAAATGTTTATATTATAATTCGTGTAACACAATCAAAGTATCAGAT
CATAGACCTGTTTATGGCATTTTCGAATCCGAAGTCGAACCTTATAAAAA
CAAGTAAGTCATAACACATCTTCCGTAGTTCTAGAGCATGATAAAACTCG
AAGTTTTCATAATTTATCCTACTGTTGATTCATTTAAAGgcaattttatt
tgaaagactTGACGACTAAAAGTTTATTAATTATTTTGTGTTCTTTTACA
CAGTTTTCAGGTCCATGGTGCGACGTTTGACAGAGAAGTTTACGTTGAAG
GTATTTGCTTTATTgttaaatgttttctttttataataagcataacgctt
ataagcatatgaaggctcagatttgcagagaTTTCTTAATCGTAAGCCTG
AAATATTTGTGGTCAATCCTTTTCTgttcaaaaaggttttgaagtggtca
agtaaaaaGGAGATATTCCACGGCTAGCCACAATCCACTTCTTCCAAAAT
CGAAATGTTGTTTGaatcgaatgtttacaaaatttctaaGATTTTACAAT
GCCAAGATGCTTTGAAAGCCTGCCCAAGAGAAAGATTTTGGACAACTTGT
CTGACGCATGCTCAATAATATCACTCTTGTTATTAAGTGAATTCGTGTTT
GTCAAATTAGTTTCAACAGAAAAGTTTCTAACAAGACATCATGTCAAACT
TTGCAGGTTCTTTTCTGTAAAACTCTTGAAAAGTTAatacaagaagccgg
agcggcgtgaaggtccagctgacgtggcaataaccgaatgtcgttcgtac
cgggttccttaagtgacgcaaaaaaatttacttcccatcctccactctga
gcttctattctttgacactttctttgtattgctaagttttggaagttttt
gatgcatttcccgaaatttcgaaacttttgccgctgatgggattcaaacc
cactatatacaaagcaTCTATgattcagtgccgtaggaagcattttcata
ttgggtgggggggggctgaagtttagtgacaccgcgagggccaaccatgg
tttggcccgaggggggaaattttgaaaatttgagctctagattgcttaaa
aatacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
gcattaaggagttcaaagttccttataaacatggtatttactccaaactc
tacccgagggctaaaaccctaaccagcggttaactcccatccccaaccct
agccctaaccctacctgaaacaaccctttaatctaaccgggaaatttgac
tctactaccaattcaatccaaaacataggNNNNNNNNNNNNNNggcaaaa
attctagatcggcggttggtttagcctggacttgttaatttattgcgcgc
acaggccccgacaaagacaaaatcttttcgatcagttgctttttaaaggt
ccattctgctgcgcgctggaccaattaAGGGTTTTTTTTACATATAAGTG
TTCTCGTTTCCATATCCGACAcatatttaaaataaaaatttatatgaaGA
ATGACCATTTGAACGTACATAAAATGATATCATGAAACATGTTCATATTA
GGACGGTGTtagcctattgttatattgtgctgaataaacaaaatttttta
tttatttctctgcttctgacaaatcttgctccgcatccgtgtcaattcaa
tgtgaaaaagcttgtaaattaaaattgacgagtataaaacaaacgatatc
acttttatttaaaaacaaagtcGTTAATAGATTATCTCTCTCTTCCAGCT
AACCTGCGTCGTAACGCACCGTCTGGTTCACAAGCGAACAGTCACGTCTG
TACAATCCTGTGACGTCATGAAAGAGCAAACGGTAAAGGAGATTACTGTG
ATATTTTGCGGAACAATTCTGTTACCTGCCGATCTGTCCAAAGATTTCCC
GGGATTTGTAAAAGCGATGTTGCTAGGCTTGGTAGGATGTCTTCCTTCTC
ACTCTTATTCTTTATTCTTCTGATAAAGAGGTCATCAGAGGTCATGGTAA
TTGCCAACAATTCTATAATTTAAGGCCTTGACCTACtaaatttgatttct
ttcgACGAGACAATGTTTCCTGTCTGATAAGAAACTTCTTCATTAGAGGA
TGACCAGAAgcctttttgttgaaaaagactTCCCATTTCAAAATCGGTTc
cttaaaattacatttctatCGAGAAAAGTATCGTTACTTTTATGATTTGA
GTCGAAGGTTATCCCCGAATGGGTAGTGTCCATATTTGTAGGTGTCCAAG
CATCTGCTCCAGATTGTTGACTTGTTTTTATCCTTATAAAGGAACAAAAT
ATTGTATCGTACAAAATTATAATTATATATTTGGGTGGAAGTTTTAGGGA
ATCGTTTGAAAATGTTTCTgtgtatattttattttttaggtttttatttt
gtatattatTACTGCCATTTGTGAATATAGTGTATTAAAAGATTGAGGCC
ATCAGATGACCTTTTGCATTTATCCTacggaaataaagaaaaacagaaaa
gacTGGATAAAAA

Coding sequence (CDS) from alignment at scaffold_439:328089..331901+

>TCONS_00065364 ID=TCONS_00065364|Name=TCONS_00065364|organism=Clytia hemisphaerica|type=CDS|length=2244bp|location=Sequence derived from alignment at scaffold_439:328089..331901+ (Clytia hemisphaerica)
ATGATAATATTCCCTTTATTTCCAGCTGATGTTACTGACCGTTTCGACCG
TGTATTTTGGTTCGGTGATTTCAATTTTCGAATACAGAAGTCACGTGAAT
CAGTTGATCGAATCATGAAAAGACATGCGCGAGATCAACCACTCATAATT
CGAGAATTACTAACACATGACCAATTAAATGAGGTTTTCGATCGTGGCAA
AATTTTCCATGGTTTTAAGGAGAATGAGATCACATTCATGCCGACATACA
AGTTCGATGTCAACACTGATGTTTATGATTCATCGCCCAAGAAAAGAGTC
CCTTCCTGGACGgATCGGATTGTTTACAAATCTCCTCAACTCTCACTTCT
CAAATGTTTATATTATAATTCGTGTAACACAATCAAAGTATCAGATCATA
GACCTGTTTATGGCATTTTCGAATCCGAAGTCGAACCTTATAAAAACAAT
TTTCAGGTCCATGGTGCGACGTTTGACAGAGAAGTTTACGTTGAAGCTAA
CCTGCGTCGTAACGCACCGTCTGGTTCACAAGCGAACAGTCACGTCTGTA
CAATCCTGTGAATGATAATATTCCCTTTATTTCCAGCTGATGTTACTGAC
CGTTTCGACCGTGTATTTTGGTTCGGTGATTTCAATTTTCGAATACAGAA
GTCACGTGAATCAGTTGATCGAATCATGAAAAGACATGCGCGAGATCAAC
CACTCATAATTCGAGAATTACTAACACATGACCAATTAAATGAGGTTTTC
GATCGTGGCAAAATTTTCCATGGTTTTAAGGAGAATGAGATCACATTCAT
GCCGACATACAAGTTCGATGTCAACACTGATGTTTATGATTCATCGCCCA
AGAAAAGAGTCCCTTCCTGGACGgATCGGATTGTTTACAAATCTCCTCAA
CTCTCACTTCTCAAATGTTTATATTATAATTCGTGTAACACAATCAAAGT
ATCAGATCATAGACCTGTTTATGGCATTTTCGAATCCGAAGTCGAACCTT
ATAAAAACAATTTTCAGGTCCATGGTGCGACGTTTGACAGAGAAGTTTAC
GTTGAAGCTAACCTGCGTCGTAACGCACCGTCTGGTTCACAAGCGAACAG
TCACGTCTGTACAATCCTGTGAATGATAATATTCCCTTTATTTCCAGCTG
ATGTTACTGACCGTTTCGACCGTGTATTTTGGTTCGGTGATTTCAATTTT
CGAATACAGAAGTCACGTGAATCAGTTGATCGAATCATGAAAAGACATGC
GCGAGATCAACCACTCATAATTCGAGAATTACTAACACATGACCAATTAA
ATGAGGTTTTCGATCGTGGCAAAATTTTCCATGGTTTTAAGGAGAATGAG
ATCACATTCATGCCGACATACAAGTTCGATGTCAACACTGATGTTTATGA
TTCATCGCCCAAGAAAAGAGTCCCTTCCTGGACGgATCGGATTGTTTACA
AATCTCCTCAACTCTCACTTCTCAAATGTTTATATTATAATTCGTGTAAC
ACAATCAAAGTATCAGATCATAGACCTGTTTATGGCATTTTCGAATCCGA
AGTCGAACCTTATAAAAACAATTTTCAGGTCCATGGTGCGACGTTTGACA
GAGAAGTTTACGTTGAAGCTAACCTGCGTCGTAACGCACCGTCTGGTTCA
CAAGCGAACAGTCACGTCTGTACAATCCTGTGAATGATAATATTCCCTTT
ATTTCCAGCTGATGTTACTGACCGTTTCGACCGTGTATTTTGGTTCGGTG
ATTTCAATTTTCGAATACAGAAGTCACGTGAATCAGTTGATCGAATCATG
AAAAGACATGCGCGAGATCAACCACTCATAATTCGAGAATTACTAACACA
TGACCAATTAAATGAGGTTTTCGATCGTGGCAAAATTTTCCATGGTTTTA
AGGAGAATGAGATCACATTCATGCCGACATACAAGTTCGATGTCAACACT
GATGTTTATGATTCATCGCCCAAGAAAAGAGTCCCTTCCTGGACGgATCG
GATTGTTTACAAATCTCCTCAACTCTCACTTCTCAAATGTTTATATTATA
ATTCGTGTAACACAATCAAAGTATCAGATCATAGACCTGTTTATGGCATT
TTCGAATCCGAAGTCGAACCTTATAAAAACAATTTTCAGGTCCATGGTGC
GACGTTTGACAGAGAAGTTTACGTTGAAGCTAACCTGCGTCGTAACGCAC
CGTCTGGTTCACAAGCGAACAGTCACGTCTGTACAATCCTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040980XLOC_040980Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065364-exon-scaffold_439-1491911889:328089..328489TCONS_00065364-exon-scaffold_439-1491911889:328089..328489Clytia hemisphaericaexon
TCONS_00065364-exon-scaffold_439-1510915933:328089..328489TCONS_00065364-exon-scaffold_439-1510915933:328089..328489Clytia hemisphaericaexon
TCONS_00065364-exon-scaffold_439-1575043694:328089..328489TCONS_00065364-exon-scaffold_439-1575043694:328089..328489Clytia hemisphaericaexon
TCONS_00065364-exon-scaffold_439-1491911889:328855..328991TCONS_00065364-exon-scaffold_439-1491911889:328855..328991Clytia hemisphaericaexon
TCONS_00065364-exon-scaffold_439-1510915933:328855..328991TCONS_00065364-exon-scaffold_439-1510915933:328855..328991Clytia hemisphaericaexon
TCONS_00065364-exon-scaffold_439-1575043694:328855..328991TCONS_00065364-exon-scaffold_439-1575043694:328855..328991Clytia hemisphaericaexon
TCONS_00065364-exon-scaffold_439-1491911889:329142..329188TCONS_00065364-exon-scaffold_439-1491911889:329142..329188Clytia hemisphaericaexon
TCONS_00065364-exon-scaffold_439-1510915933:329142..329188TCONS_00065364-exon-scaffold_439-1510915933:329142..329188Clytia hemisphaericaexon
TCONS_00065364-exon-scaffold_439-1575043694:329142..329188TCONS_00065364-exon-scaffold_439-1575043694:329142..329188Clytia hemisphaericaexon
TCONS_00065364-exon-scaffold_439-1491911889:331137..331901TCONS_00065364-exon-scaffold_439-1491911889:331137..331901Clytia hemisphaericaexon
TCONS_00065364-exon-scaffold_439-1510915933:331137..331901TCONS_00065364-exon-scaffold_439-1510915933:331137..331901Clytia hemisphaericaexon
TCONS_00065364-exon-scaffold_439-1575043694:331137..331901TCONS_00065364-exon-scaffold_439-1575043694:331137..331901Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065364-proteinTCONS_00065364-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:328089..331901 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.3942	1.91023	0.98576	0.585536	25.4943	20.411	19.8679	21.4818	19.1536	14.3453	13.0733	14.7649	8.45785	8.84799	8.75735	11.2169	15.5923	14.3069	13.089	14.1464	19.4808	16.8926	10.4102	10.534	10.616	12.7221	9.25189	8.0538	6.07401	6.01265
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000300IPPc
IPR005135Endo/exonuclease/phosphatase
Vocabulary: Biological Process
TermDefinition
GO:0046856phosphatidylinositol dephosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046856 phosphatidylinositol dephosphorylation
Blast
[Close]
BLAST of TCONS_00065364 vs. Swiss-Prot (Human)
Match: INP5E (72 kDa inositol polyphosphate 5-phosphatase OS=Homo sapiens GN=INPP5E PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.776e-43
Identity = 81/186 (43.55%), Postives = 114/186 (61.29%), Query Frame = 3 
Query:  114 ADVTDRFDRVFWFGDFNFRIQKSRESVDRIMKRHARDQPLII--RELLTHDQLNEVFDRGKIFHGFKENEITFMPTYKFDVNTDVYDSSPKKRVPSWTDRIVYKSPQLSLLKCLYYNSCNTIKVSDHRPVYGIFESEVEPYKNNFQVHGATFDREVY-------VEANLRRNAPSGSQANSHVCTI 644
            ADVT RFD VFWFGDFNFR+   R  VD ++      Q L++    LL HDQL     +G IF GF+E +I F+P+YKFD+  D YDS+ K+R PS+TDR++Y+S     +  + Y+SC  IK SDHRPVYG+F  +V P ++N  +    FDRE+Y       +   ++R     SQ +S +C++
Sbjct:  463 ADVTTRFDEVFWFGDFNFRLSGGRTVVDALLC-----QGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDSTSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFRVKVRPGRDNIPLAAGKFDRELYLLGIKRRISKEIQRQQALQSQNSSTICSV 643
The following BLAST results are available for this feature:
BLAST of TCONS_00065364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
INP5E1.776e-4343.5572 kDa inositol polyphosphate 5-phosphatase OS=Hom... [more]
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