TCONS_00065477 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065477
Unique NameTCONS_00065477
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065477 ID=TCONS_00065477|Name=TCONS_00065477|organism=Clytia hemisphaerica|type=transcript|length=461bp
CAAAAATGGAGAGATTTCACGTTTGAAATTCTTGATTTACTTGACGTTCC
CATTTATAGGTATTCTGATgattatttgtaaaaaaatctcCAAAACAGAG
ACTCAAAAAGCATACCAAAAAGCTGATGGTCGATTagttgaaatattcga
attgcCGTACAAggagaaatatttttggtggGAAGCTTGGCGTTTAATGG
AACGTTTTATTGTCGCAGGCCTGTCTGTCTTCTTGACGAACCCAATATAT
CGCATATTATATATCACTTCAGCATTTGCATTATTTTCGTATCTTCACCG
GAGAGTGAACCCTTACAAGCGAACAATGTTTCTGCTGAAACGACTGGATG
CTGTCAGTTGGATTTGCTTGTTATTAATCTCTTTGTTGAACGAAATGAGA
GCGGTGGCATATATCTATAACATTCCCAATGTGGACAGCATAAACCATGC
TTTGAAAGCTG
Run BLAST on NCBI

protein sequence of TCONS_00065477-protein

>TCONS_00065477-protein ID=TCONS_00065477-protein|Name=TCONS_00065477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
KNGEISRLKFLIYLTFPFIGILMIICKKISKTETQKAYQKADGRLVEIFE
LPYKEKYFWWEAWRLMERFIVAGLSVFLTNPIYRILYITSAFALFSYLHR
RVNPYKRTMFLLKRLDAVSWICLLLISLLNEMRAVAYIYNIPNVDSINHA
LKA
Run BLAST on NCBI

transcript from alignment at scaffold_439:589492..589952

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065477 ID=TCONS_00065477|Name=TCONS_00065477|organism=Clytia hemisphaerica|type=transcript|length=461bp|location=Sequence derived from alignment at scaffold_439:589492..589952 (Clytia hemisphaerica)
CAGCTTTCAAAGCATGGTTTATGCTGTCCACATTGGGAATGTTATAGATA
TATGCCACCGCTCTCATTTCGTTCAACAAAGAGATTAATAACAAGCAAAT
CCAACTGACAGCATCCAGTCGTTTCAGCAGAAACATTGTTCGCTTGTAAG
GGTTCACTCTCCGGTGAAGATACGAAAATAATGCAAATGCTGAAGTGATA
TATAATATGCGATATATTGGGTTCGTCAAGAAGACAGACAGGCCTGCGAC
AATAAAACGTTCCATTAAACGCCAAGCTTCccaccaaaaatatttctccT
TGTACGgcaattcgaatatttcaactAATCGACCATCAGCTTTTTGGTAT
GCTTTTTGAGTCTCTGTTTTGgagatttttttacaaataatcATCAGAAT
ACCTATAAATGGGAACGTCAAGTAAATCAAGAATTTCAAACGTGAAATCT
CTCCATTTTTG

Coding sequence (CDS) from alignment at scaffold_439:589492..589952

>TCONS_00065477 ID=TCONS_00065477|Name=TCONS_00065477|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_439:589492..589952 (Clytia hemisphaerica)
AGCTTTCAAAGCATGGTTTATGCTGTCCACATTGGGAATGTTATAGATAT
ATGCCACCGCTCTCATTTCGTTCAACAAAGAGATTAATAACAAGCAAATC
CAACTGACAGCATCCAGTCGTTTCAGCAGAAACATTGTTCGCTTGTAAGG
GTTCACTCTCCGGTGAAGATACGAAAATAATGCAAATGCTGAAGTGATAT
ATAATATGCGATATATTGGGTTCGTCAAGAAGACAGACAGGCCTGCGACA
ATAAAACGTTCCATTAAACGCCAAGCTTCccaccaaaaatatttctccTT
GTACGgcaattcgaatatttcaactAATCGACCATCAGCTTTTTGGTATG
CTTTTTGAGTCTCTGTTTTGgagatttttttacaaataatcATCAGAATA
CCTATAAATGGGAACGTCAAGTAAATCAAGAATTTCAAACGTGAAATCTC
TCCATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041039XLOC_041039Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065477-proteinTCONS_00065477-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065477-exon-scaffold_439-1491911889:589492..589952TCONS_00065477-exon-scaffold_439-1491911889:589492..589952Clytia hemisphaericaexon
TCONS_00065477-exon-scaffold_439-1510915933:589492..589952TCONS_00065477-exon-scaffold_439-1510915933:589492..589952Clytia hemisphaericaexon
TCONS_00065477-exon-scaffold_439-1575043694:589492..589952TCONS_00065477-exon-scaffold_439-1575043694:589492..589952Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:589492..589952 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.318807	0.155952	0.95428	0.150027	0.414146	0.169451	0.118637	0	0.142634	0.0937618	0.613377	0.218334	0	0.0857902	0.105687	0.433301	2.0952	0.783028	1.08895	2.78854	0.968526	0.29351	0.755771	0.152005	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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