TCONS_00065381 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065381
Unique NameTCONS_00065381
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065381 ID=TCONS_00065381|Name=TCONS_00065381|organism=Clytia hemisphaerica|type=transcript|length=505bp
TTTGGTATGCTCCGCTTCTGCTTTCGTGGTTGGTCCACCAATTGCAGGCG
CTGTTTACACGGCGACTGGTGATTACTCAATCGCTTTCTTCATGTGTGGA
GCTATGGCGTTCGGCTCGGCTGTCCTCCTCTTTCCAGTGACGTGTATACG
GGACGAAGAACAATTCAAATATCGAGCTAAACGAAGAAAAGAACGAGCAG
AAGCTAAAAAATTAAGAGAAGAACGAAAGAAAATGGGCTTACCAGAAGAA
GAAGCTCCATCTACACCAAAGGACCATCTGTCGGCTGACAAGATGAAAAA
GATACGACAATCACAAGTCTCCCTACTCACACGTAGCTGGCATAGCATTG
ATTTCAAACAACACAAATCTAAGAGTAAAGAAAGTATACGTAGTCGTGCT
AGTAGGAGAAATGTCGATTTGAATGAGGTCAAAGTTGATGCTTGATGCCT
TATCAGACATGCGTGAACTATCtgacttttttatcaaactGTAACCGACC
GAATA
Run BLAST on NCBI

transcript from alignment at scaffold_439:627883..629245+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065381 ID=TCONS_00065381|Name=TCONS_00065381|organism=Clytia hemisphaerica|type=transcript|length=1363bp|location=Sequence derived from alignment at scaffold_439:627883..629245+ (Clytia hemisphaerica)
TTTGGTATGCTCCGCTTCTGCTTTCGTGGTTGGTCCACCAATTGCAGGTT
CGTTTCCTTTTTCTTGATATCCTTTAATCTTTAATCTCAAAAGACGACAG
TAAGTCAACAGGCTTTCTTCCTCCCTTTGAACGTTAATCTCTTTGTTCCA
GGGGAAATGTCATTTGATCGATCAACAGTTTCCCTCCCGTCATTTTATAG
CAATTGGACACCCTCCTATCACAAAGTAGGCTACGTCATagcttccttcg
tttcgagcgtaaaactcctactctaaGGTTTAAAAGCCTGGAgttgtcta
ttgtgtagactaatgACAGAGCCGGTAGGACCTTCATTAGAAAACTTTGC
TAAAAATATTGTCTTAGGTGAGAAAAACCTTGTAATTTCACCGCCCCGTT
TCCTAATTCGTTAAGACGACAGGATTGTCTTCAACTGGTTTAGACCCACA
CGCTGATTATTTGTATGTCATTACTTAACTAATGTTTTTACTTCTTGGTT
ATTTGAAGGCGCTGTTTACACGGCGACTGGTGATTACTCAATCGCTTTCT
TCATGTGTGGAGCTATGGCGTTCGGCTCGGCTGTCCTCCTCTTTCCAGTG
ACGTGTATACGGGACGAAGAACAATTCAAATATCGAGCTAAACGAAGAAA
AGAACGAGCAGAAGCTAAAAAATTAAGAGAAGAACGAAAGAAAATGGGTA
TGATATAtttgttcatttgttttttgatttagTGTTTGGGATTCTCTTCT
TACTCTACTAAATTAGCCTGGGTATCAAGACAATACACTCATCATTGTTT
AAAATTGTGTCTGTGCCAGGTGGATTTCCGTCTAAACCTGACCGGGAatg
agatttttgtttattcatcaaattagaaaaaaataaggaCGTTTTTCTGT
CTGAAAAGATGGGTTTCCCTGCTCCTCTTCTAGCCTGAATATCCAGACta
aaagcttttagaaaaaaactacCTTAACATGAAAAGTTCAAAGATGTTAT
ACATCAAGCACTGGTGCTTTCATTGTGCAGTTTAACCAGTTTGAGGATTG
ACTCAACTTTTAAAGTGTATTTTGAATTTACTTCCCTAATCCAGGCTTAC
CAGAAGAAGAAGCTCCATCTACACCAAAGGACCATCTGTCGGCTGACAAG
ATGAAAAAGATACGACAATCACAAGTCTCCCTACTCACACGTAGCTGGCA
TAGCATTGATTTCAAACAACACAAATCTAAGAGTAAAGAAAGTATACGTA
GTCGTGCTAGTAGGAGAAATGTCGATTTGAATGAGGTCAAAGTTGATGCT
TGATGCCTTATCAGACATGCGTGAACTATCtgacttttttatcaaactGT
AACCGACCGAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040986XLOC_040986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065381-exon-scaffold_439-1491911889:627883..627929TCONS_00065381-exon-scaffold_439-1491911889:627883..627929Clytia hemisphaericaexon
TCONS_00065381-exon-scaffold_439-1510915933:627883..627929TCONS_00065381-exon-scaffold_439-1510915933:627883..627929Clytia hemisphaericaexon
TCONS_00065381-exon-scaffold_439-1575043694:627883..627929TCONS_00065381-exon-scaffold_439-1575043694:627883..627929Clytia hemisphaericaexon
TCONS_00065381-exon-scaffold_439-1491911889:628391..628579TCONS_00065381-exon-scaffold_439-1491911889:628391..628579Clytia hemisphaericaexon
TCONS_00065381-exon-scaffold_439-1510915933:628391..628579TCONS_00065381-exon-scaffold_439-1510915933:628391..628579Clytia hemisphaericaexon
TCONS_00065381-exon-scaffold_439-1575043694:628391..628579TCONS_00065381-exon-scaffold_439-1575043694:628391..628579Clytia hemisphaericaexon
TCONS_00065381-exon-scaffold_439-1491911889:628977..629245TCONS_00065381-exon-scaffold_439-1491911889:628977..629245Clytia hemisphaericaexon
TCONS_00065381-exon-scaffold_439-1510915933:628977..629245TCONS_00065381-exon-scaffold_439-1510915933:628977..629245Clytia hemisphaericaexon
TCONS_00065381-exon-scaffold_439-1575043694:628977..629245TCONS_00065381-exon-scaffold_439-1575043694:628977..629245Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:627883..629245 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0428374	0.153136	0.976992	0	23.7033	18.8258	37.6635	58.8702	13.0458	22.302	3.1016	4.74804	4.19058	3.78535	0	0.20118	3.7524	4.45235	7.44489	9.422	0.585012	2.57829	0.00999081	1.30454	5.11352	3.69709	0.277919	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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