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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065485 ID=TCONS_00065485|Name=TCONS_00065485|organism=Clytia hemisphaerica|type=transcript|length=1480bp
TGATCATCGGTGTTTGAGTAAGAAAAACGGTACTTGTTTGATACACACCA
TACGTCGTGGGATTTTCATGCACACTTTATCTCCAAAACACGCCAACATT
GAGGGTGAGACGAACGTGCTCCAAATCAAAGTTTCCGACCACGGAAGAAT
TGTCGTCCTTTCCAATGTTAAAGACCAAGACATGTCTTGTCATTTCCTGA
CAGTGTACACCATCAACAGCCACCTGTTGTACAACCTCCCCTTAAACATG
GTGGTACACGACTTCTGTCTGACCAACAACTTCCTTGTCTTTGGAAGTAT
GAATGGAGCCTTACAGATACGCCATATGAGAGACTTGAACGAGGCTGTAG
TTTCCAAGAAAGTAAAAGCACCCATCCGGACGGTCTTTGCAACTCACAAT
GGCTCCCATATCTTCGTCGGTCAAGATGATGGAAATATTCTTGTCATTTG
CCCTTCCAAATTGACCACGTGACCTTAATATCTCTTTTGATTGGATGACT
AGTAACGATCTTTGGTTTCATTGGACGAAACTTAACCTTGGACGGAAACA
TTTTACTACAAAGTAGTGGTGTTTGTGCTTATCTAAATATTATATAACGA
GTCGAGCTTATTAAGTTTTTGATTGCGCAGCTGGTGTTCACCCCCGAAAT
ATTCTTAAAACTATCGATATTTTAACTAATGATTAGATAAATAATACAAT
TTTCCATTAGGCGCAGGATTTCTGAGTCAAAGCTGGTTTATTAGTAAAGT
TTGCTTTCTTTGTATATTACTTTCTCCATATGAGATGGagttttataaga
tactttaataattggtcatttgaagtaataaaaatgacgcgtttattaga
aaaagcaacaaaattgttttattactggttaacgactaACCAAATCGAAT
AAAAGCTGGTAAAAATTCCATCACGTCCCACTTTCTCAATGAAATTTCCA
GGTATTGATTGAATGGTTGAAAAATTCATCTTACTCAACCCTACCATTCA
ATGTCCAGTTCTAAACCATGGCAATCTGTTCTTTTATGAAAAACTTGCGA
CACTGACTTGGGTCTCATTTCTTCAGGTGAAAAATCACTCCGAGTCTTTc
gagtaaaaaaaattcaaatgtttttttttctcaattgatTACTAGTTGCT
TGTACAAATTGCATTTAgttgtttttcgtttttatttatattttctatac
caaattttaaatttttttatactttgttattgttttttcaaaaaaaaatt
tcggacTTTGCACTTTAAGTAGCGAAAAATGATAGATAATTTAAGACACT
TTAATAatcgaaaatatattttttgttgatttaatAGGTGTTATTTTCCG
GCGTTCTTGTAATATTCTCGTGTAAATTTCATTGAACTTTTCGCaccctt
tttatatattttttttttcaattttagtcattttgtttactttctttttc
taaaattttggggcggatcttttttttttt Run BLAST on NCBI transcript from alignment at scaffold_44:150561..157271+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065485 ID=TCONS_00065485|Name=TCONS_00065485|organism=Clytia hemisphaerica|type=transcript|length=6711bp|location=Sequence derived from alignment at scaffold_44:150561..157271+ (Clytia hemisphaerica)
TGATCATCGGTGTTTGAGTAAGAAAGTAATAACAACTTACAAAGTCCGGA
ATGATGGTGAAAATGATAAACGTGATTACTAACAAAAAGATGGCGAAAAA
TTGTTTGCTATTCGTTAGCCTCCTCGGTGGTCTTTTCCGTATGCTTTGGG
TTTTTCCGGCGTTCGTTATATCCGGGTTCACGCagttcttttttctgttt
tgcttaattttgatgaaaatgtatAAATAGGCTGGGATAGCGACAAGGAG
GAATATGATATCCAGAATCGGAAAGAAAATGGCGTcaatgatgaaaattt
ccacATCTTGGAACCAGAAGATAAAGAAGAGTATCCAGTTGAAACACCAC
GCTAGTATGATGAGCTTAATGGTGCTTCTTGTGTTCCAATACAACGGAAA
CTTGATGCTCAAATAGATTCGCATAAACCTATCTAATGACATGAAAATTA
ACGACTCGTACATCATATAATAAAAACTGTATTGAATCAGTGACATCAAG
CGAAAATGTTGCGGTAAAGCTCGCCGAAAAATGCCAAAGACACATGTCTG
TAGTTCAGCGATGGTCAGATTCAAAAGATAGATTTTCTGAGTAGTTCCAA
AAGTTGGGTTGCTGAATTTTGTTGTTATTAACAAACAGAATCCAAGGAAG
TGTAAAACCATCGGAAAACCAATGAAAATTGTGATATATTCCATTTCGTG
ACCAAAGCCAAGTTTATTAATCAACGACAACTGTCTATAGGTCTTCGGTC
TTCCAGACCTACCGACATACGCCGAAAGAGCTGCCAGAGTTCAGTAGTTC
AACCTTAATAGAAGGATTGAAATTAAGCCGTATTATGATAATATCTACTT
TCGATATTCTAGTCTCCGTGTTTGTTTTTTGCTCCGTTTTGTTGTATTAA
AGTTTTGAAGGAAAAAGCAAACTTTTTCATAAAGAAGGATTTCGCAAGTC
TTCCtcttcaaaaaagattttcatttttgatatcCCCTTTACATTTTTCA
TTACTTAGTCCAATCAAAATAATTAGTTCGAGTTAGgatatcattatttt
ttaattgaaagccCCCTAGGTCTTAGTTATCATTTTAAATGATCTGTGAT
TAGGAGAAAAAGACTCCTTGTTCCATTTTTCCTAGCATGCACTGCAACCT
ACGctttttattttggtgaaaTTTCCTGGTCATTTGTTTAGACTACTCGA
GTGTTATTAAACACTAGAATtcgttgaagaagaaaaaaaacagaaaactt
aTCCGAAATAAAGCCTGCTTGTAAAAGCGAAAGGGTATTCGCCGATCAGA
TGGAAAACATATTCGTTAGATATCTGAATGGTCAATTAAATGAAAGACTA
CCATCCCTACCATATGTTCCATATTTCCCTTTTGTTGTTCTTCTTTACTT
TTCGGTGTAGTACCCTTTCCTGCATACTCCTgtacattacacgttttttt
ataagggacaagtttataaggaacttgaggctgaaaaaggtctgaaaaat
aaggaatagttaaggaactgctcaggctcaGAATAAGAAATGAAGTCAAG
GAACAGCAAGAGTCCAACTTGAACTTTTACACATTTACAACAACCTaaat
aaaaagatgtaaaaatgtTGCTGAAACATCGTCCAATATGTCACAAAGAC
AAAAAATGCTTATGCAGAACACATAGCAAATCCAATCTTAGCAGCTGAGT
AACTAAGGAACTTTGAGGTTGAAACTCTTTGGAAAAATAAGGGACTCAAG
CCAAGTTGAGGGTTCCTTATAAATAATTGTATACCCTGTATACAAATAAA
TATCCGATACcttaaagaaatgattttagaCCTTTTATCattattagcga
ggttaagcaagaagctatctattacatacggaatctattacgtgagtttt
tagACTGGATCCGAGGCGTTTTAGCCTGATTCCTAAAGCTTCACGGCATA
GAAAAAAAAGTGGTTAAGCAAAAAGGCGATCTATGACGTATGgcgtaatg
tttatttttccgtATCTCACTTTCGGCCCCaacttataaaattttatttt
tctttctttcttttccagcTTTCTTGTTGGTGGTCTGGTCTATAAAATCC
CCTTACTTTCAATCTTAATCTACTAAGTTTTTTCCCAAGACAaatgtttt
cacaaaaattaaaactagaCAAGCATAGTCAAGAGTTTTCTCTGTAttac
ttttattatttttatgcaacatttttataaacaaaaaatatgactATGAC
TTATCATTTCAATGAATTCTTAACATTGCAATAGaaatatataatttcat
aatttcattccTAGTTTACATAGGTACCAATCAAAAATTACtgctttatt
tataaacaaaaaaataatctgtaAGAGCATAGTATATACACTGTATACAG
TCTGTCATCCTTATTTAGCTGCACTTCTATATGAATGCTTCACCATTAGC
ATTACCAATAAAAAAGTGTGCAAACCAGGTCTCGAGTTTCATATCTGGCA
GGTGTTCCTTCTTATGCTTCTTTACATTCCAAGGTATCAATGTCACCTTT
TTAGGAAGGGAGATGTCTCTTTAGAATCAAACCAAACTTTCTGGAACGTT
ATAACATTATAATGTCGAAGAAGATGGAGGATGACCAGTCAATAAACATT
TTTCAGTAAAGGATTGAGAACTTAAAGCAGTAGCGGTTGTCCAGAAGATA
GAGCTTGATATAATTTTCGAGAACGGTTTGAAGTTCAGCGGTTGTGTGAC
ATCAGGTTCTTACTCAGGCTGATTTGTACGTACAATATATGGTTGATGAT
GGAGAGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGGAAcaataaataaagatttcttcTGTTATGCTT
CGGGTGGAAGGGTAAATTTATTTGAGCTTGGCAGAGCAGTCTTTTTCGTG
TTTGTTGCTTTGGGTGTGGTTGACATTATAACTTTGTGGCTTCTTCACAC
TTGATGGTAGCACCACAGAAAcactaaaaaacatgaaaaagaaatatggt
tacATGCTGTTCATTGTAAAGGTTACTTTGGATGTATTTGGACTTTGAGA
GAAtataaaaagaaagataaaaaacagtagaaaaacaaacagacaaaaga
accagaaagaaactttctgtttgttttggtttgataaaaaattcagcAAA
GGTTATTTAATTACACTTACATCTTGACCTTCTTTTGAGCAATAAATTCT
TTCACTTTGTTTGTATGCATCATAGTTTCCACAGATgagattcaaaaact
ttcttctGTCAGCTCAAACTTGtcagaaagtcaaaaaaaactctaccaaa
gtttcttttctgtttacatttttttcgggTGATTTTTGATCCTAAGCGAT
TCAGCCCAATCTCCGTAAGGTAAATTTCCCTGGATCATACTTATATCCTA
ATCGATATCTATTACGTGAGATTGGAGAATTTCGCGCAATAGATCCACTC
CTCAAACTATGACGTACAGGTCAAATTTCACGGGACAGAGTTAGCCTTGA
GATTTGGGCGCTAGCCCGCgaaaaactcacgtaatagattccgtacgtaa
tagatagcttcttgcttaacctcgctattaagaatatttatgtttgattt
tgaaatttctcataCTGTCTTTAATTTCTTGTAGAACGGTACTTGTTTGA
TACACACCATACGTCGTGGGATTTTCATGCACACTTTATCTCCAAAACAC
GCCAACATTGAGGGTGAGACGAACGTGCTCCAAATCAAAGTTTCCGACCA
CGGAAGAATTGTCGTCCTTTCCAATGTTAAAGACCAAGACATGGTAAGAA
AAATAACTTGCCTCATGTTTCTTGGAAGatggaaaatgaaattttcttcc
agcGATATTTTTATTATTAGGTGGAGGCTATCCTGAGCCTTCCAGGGTCC
CTTTTCCGACTGAAGGAATGGTCACAAAATCACTAAATTAGAAAAACTTG
CAAGATcgcattttgatcattttttccaaattttcaaggTGCTAGGTTAC
GGGAAAAATATCAGAGTCGAGTCTGACATTTCGCCAGTTATCcctttaat
cttttttttgtgATCTAAAAATGCTGCATAGACTTACCTtaccttttgat
ttttctaatatttccaagtatttcttttgaaaaataaaaaactaagtTGT
GGAGctttaatattttcaatatttgactTGCATAAAGTTGACATTATAAA
GCGGTCGTGattttataccgggtgcgccacaaaaaagtttctctctttga
gactaattttctcgaaatctaaaaattttagaaaaaccattcctatatca
ttggaaagaagaaagatagacttaaattttgatgggtcatttattaaatt
cgattcatcagatcaaaagttatgctcaattgaatataAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNACATTATAAAGCGGTCGTGATTTTGTATTTCTCCTC
TTTTCTTACTTTTCAGTCTTGTCATTTCCTGACAGTGTACACCATCAACA
GCCACCTGTTGTACAACCTCCCCTTAAACATGGTGGTACACGACTTCTGT
CTGACCAACAACTTCCTTGTCTTTGGAAGTATGAATGGAGCCTTACAGAT
ACGCCATATGAGAGAGTAAGTTCCCCTATTCAAACTTCACATTGTttaaa
aactgctgacgtcatcaaaatattgTGCAAAAGTTTCATTccttttcaat
catttttaaagaatttgccagattcttcttcttctatATCTTCTTGTTCT
TCAAAGTGGTTTCCATATTTTGAcattaaaattttctgaaaatatctCAT
CCACTTGTTTTCAGCTTGAACGAGGCTGTAGTTTCCAAGAAAGTAAAAGC
ACCCATCCGGACGGTCTTTGCAACTCACAATGGCTCCCATATCTTCGTCG
GTCAAGATGATGGAAATATTCTTGTCATTTGCCCTTCCAAATTGACCACG
TGACCTTAATATCTCTTTTGATTGGATGACTAGTAACGATCTTTGGTTTC
ATTGGACGAAACTTAACCTTGGACGGAAACATTTTACTACAAAGTAGTGG
TGTTTGTGCTTATCTAAATATTATATAACGAGTCGAGCTTATTAAGTTTT
TGATTGCGCAGCTGGTGTTCACCCCCGAAATATTCTTAAAACTATCGATA
TTTTAACTAATGATTAGATAAATAATACAATTTTCCATTAGGCGCAGGAT
TTCTGAGTCAAAGCTGGTTTATTAGTAAAGTTTGCTTTCTTTGTATATTA
CTTTCTCCATATGAGATGGagttttataagatactttaataattggtcat
ttgaagtaataaaaatgacgcgtttattagaaaaagcaacaaaattgttt
tattactggttaacgactaACCAAATCGAATAAAAGCTGGTAAAAATTCC
ATCACGTCCCACTTTCTCAATGAAATTTCCAGGTATTGATTGAATGGTTG
AAAAATTCATCTTACTCAACCCTACCATTCAATGTCCAGTTCTAAACCAT
GGCAATCTGTTCTTTTATGAAAAACTTGCGACACTGACTTGGGTCTCATT
TCTTCAGGTGAAAAATCACTCCGAGTCTTTcgagtaaaaaaaattcaaat
gtttttttttctcaattgatTACTAGTTGCTTGTACAAATTGCATTTAgt
tgtttttcgtttttatttatattttctataccaaattttaaattttttta
tactttgttattgttttttcaaaaaaaaatttcggacTTTGCACTTTAAG
TAGCGAAAAATGATAGATAATTTAAGACACTTTAATAatcgaaaatatat
tttttgttgatttaatAGGTGTTATTTTCCGGCGTTCTTGTAATATTCTC
GTGTAAATTTCATTGAACTTTTCGCaccctttttatatattttttttttc
aattttagtcattttgtttactttctttttctaaaattttggggcggatc
ttttttttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065485-exon-scaffold_44-1491911889:150561..150585 | TCONS_00065485-exon-scaffold_44-1491911889:150561..150585 | Clytia hemisphaerica | exon |
| TCONS_00065485-exon-scaffold_44-1510915933:150561..150585 | TCONS_00065485-exon-scaffold_44-1510915933:150561..150585 | Clytia hemisphaerica | exon |
| TCONS_00065485-exon-scaffold_44-1575043694:150561..150585 | TCONS_00065485-exon-scaffold_44-1575043694:150561..150585 | Clytia hemisphaerica | exon |
| TCONS_00065485-exon-scaffold_44-1491911889:154345..154503 | TCONS_00065485-exon-scaffold_44-1491911889:154345..154503 | Clytia hemisphaerica | exon |
| TCONS_00065485-exon-scaffold_44-1510915933:154345..154503 | TCONS_00065485-exon-scaffold_44-1510915933:154345..154503 | Clytia hemisphaerica | exon |
| TCONS_00065485-exon-scaffold_44-1575043694:154345..154503 | TCONS_00065485-exon-scaffold_44-1575043694:154345..154503 | Clytia hemisphaerica | exon |
| TCONS_00065485-exon-scaffold_44-1491911889:155777..155925 | TCONS_00065485-exon-scaffold_44-1491911889:155777..155925 | Clytia hemisphaerica | exon |
| TCONS_00065485-exon-scaffold_44-1510915933:155777..155925 | TCONS_00065485-exon-scaffold_44-1510915933:155777..155925 | Clytia hemisphaerica | exon |
| TCONS_00065485-exon-scaffold_44-1575043694:155777..155925 | TCONS_00065485-exon-scaffold_44-1575043694:155777..155925 | Clytia hemisphaerica | exon |
| TCONS_00065485-exon-scaffold_44-1491911889:156125..157271 | TCONS_00065485-exon-scaffold_44-1491911889:156125..157271 | Clytia hemisphaerica | exon |
| TCONS_00065485-exon-scaffold_44-1510915933:156125..157271 | TCONS_00065485-exon-scaffold_44-1510915933:156125..157271 | Clytia hemisphaerica | exon |
| TCONS_00065485-exon-scaffold_44-1575043694:156125..157271 | TCONS_00065485-exon-scaffold_44-1575043694:156125..157271 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_44 | supercontig | scaffold_44:150561..157271 + |
Blast
The following BLAST results are available for this feature:
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