TCONS_00065487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065487
Unique NameTCONS_00065487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1746

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065487 ID=TCONS_00065487|Name=TCONS_00065487|organism=Clytia hemisphaerica|type=transcript|length=1746bp
TCTAAACTCAATTCAAAAAGCGAAAAAGGGAGTTGTTATTtaaaacaaaa
caaacaacttAATCTGGTgacaataataaaataaaaatggcaACCTGTTT
ATCGATTGCAACTATGGTTCTCTGTTTTCTGGGTTTCTTCATGCTGTGCA
TCAGTACTGGGACCCGAAGATGGAAGGAAGACATCAACTATGTCAGAGGA
ACACGTACCTATATTGGTCTCTGGCAAGCTTGCATTGAATCCGAGGGAAA
CAATGATGGCTACCCTACCACTCAGGGTGTCATCTGTGATAAAGATTACT
TGAGACCTCACTTGAATGAACCACCTCCATGGTTCAATGCGACACGTGCA
TTGATGTTGTTATCTTGCATTGGAACTGGTTTCGGATTGATCTTTTACAT
CACAGCTTTCATCACGGATAACAGCAAAAAGACCGGCAGCCGATATTTCC
CTTGTGTTCTTATCATTTTCATATCAGGTCTATGTGCTGTGATTGCATTA
TCTATCTTCACAACTCATCGCAAATGGGGCGTTCAATATGAAGTCGGAGG
CGGTGAATTTTACGCCCAGTACTGGACACAGGTCGAAGGAGAAGCTGTTG
TTGATGGTACACGATTCAAAATCGAGACATGGTTGAGATGGTCGTACGGT
ATTGGTTGGGGAGGAGTTGCCATGACACTTTTCGCTCTCATTACCGCTGC
TTTCTCTGATCTAACCCGACGACAAGTCCGTTATTAAACTGGAGAATATT
TTACTTAAGTAAAATCAACCAATAGTAACAGAAATGGACTTtatgaattt
tagatttatgaAGAAccgttttggaaaaaaaattatttacagtAGCTGGT
AGTGCTTGTTAGATGCCAGGATATTGAAGATAACCTTTTTGGTAATAAGT
ACTCATATTGGTGAGTAATTCAAGGGACAGAATGTTACTAAAAATAGTTA
ATGTTTTATTATGTACTAGGTTTGAATTTAATTAAAGTTaacaaaatttt
atgtttttagtaGAAGAGACTTTGTTTGCCCTACCTGACCGTTTTCTCAG
AAATGTAAAAAATACTAGGCCCTTAGATGTCTAAATTGAATATTAGGCTG
CTGatatccactaacggattcgtgctccttatactacctgcGTTTTGTAG
ATGTCTACGATTCAGACTAATTGAATATCGAATATGAAGAGGTGATGATG
ACAACATATTATCATCGCTACCAAAATTCTTCTTGCaagttttacaaaaa
caaaagtcTCAACCATGCTGAATTTCGTCACCTTATTTTTGTATGTTAAA
AATTCTTATTAATTTTATGGGTGGtcgttttttatatttaatcatttact
tcttttcctttttataatgattCTTACTTTATTTTAAACgcacaattttt
ttatatcttgTATTTACCAAAAGtatatagaaagatttgaaaacgGCTAC
ATTGGAAGTGATTCGACAAAACTTTGCTTCTTCTAAATTTTCGAGTGTGA
GAGAGTAAGCTACAATCGACTAAACTGCGTGAATTAGAAATAATGGTTAT
TTTGCACAAACGCTCAAAGTAGTGGAAAATTTGCTAATATTTACGTTGTT
CTTATGTATTTACTTGAAGTATACCATGTAAAGTATAATCCATTTTTATG
TTGATTGTCTATCATTTTGTACATTGCCTCTCTTTATGGCTCTAATGATT
TTTTACTttaattatgaaaaaatataatcctaaaaaaaaacaatca
Run BLAST on NCBI

protein sequence of TCONS_00065487-protein

>TCONS_00065487-protein ID=TCONS_00065487-protein|Name=TCONS_00065487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MATCLSIATMVLCFLGFFMLCISTGTRRWKEDINYVRGTRTYIGLWQACI
ESEGNNDGYPTTQGVICDKDYLRPHLNEPPPWFNATRALMLLSCIGTGFG
LIFYITAFITDNSKKTGSRYFPCVLIIFISGLCAVIALSIFTTHRKWGVQ
YEVGGGEFYAQYWTQVEGEAVVDGTRFKIETWLRWSYGIGWGGVAMTLFA
LITAAFSDLTRRQVRY
Run BLAST on NCBI

transcript from alignment at scaffold_44:218418..233807+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065487 ID=TCONS_00065487|Name=TCONS_00065487|organism=Clytia hemisphaerica|type=transcript|length=15390bp|location=Sequence derived from alignment at scaffold_44:218418..233807+ (Clytia hemisphaerica)
TCTAAACTCAATTCAAAAAGCGAAAAAGGGAGTTGTTATTGTAAGTATAT
GACATCATTAGACCTGAACTTTTATGTTGCTTCATAGATCTTATCATATA
TTTTCCTATGGTTATTGAGTTCCTctcttttcctgtatcctttacGATTG
AGGTGGTTTTGTGGGGGTGTTGGCTCCTTCATACTGTCATATGATGACAT
ATGAtgccgtgagtggtcctaaatccgagagccctgcctaattccgaccc
tccaaataactgttatgaaaaaaattctatgtttacaaacattccctctc
caagttgaacgataaactattgcaagagctctcgaaacaaaacatctaac
aagatgatgGCTGGCTGtacacaagtgttacgcgtatgccaaatcgcgta
ttacgatcgtaatacgcgatttggcgaTTGCGTGatcgaatcaaaacaaa
gtaccgtaagttggtctaatgtcgacatccgtcttttaatttcgacaccc
ttctttagagataggaacaatagaaactgaggaaggtcgggatcgctgat
tgactttgactAGCTCGATGAGAGGAGgaatctttagtctatcagtgatt
tcgaccttcttattattcctatctataaagaaggatgtcgaaattagaag
acagatgtcgacattagaccaacttacggtaNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNATTCGGAAAGAACTATCTTTCGGCTTCAAGA
ggctttttacagaattttaaAATGATCTTCAGAGCTAGACCTACAGATCA
ATGAGTAAGGTaaattttcgtcaatttttgTGTTGATTCGATTCCAGACG
TTCGATTTTTGGCTTACTGAAACAGCCGtgacgaacaacctctaaattgc
cgagtacaggagaaaaaaaatcgaaattcaaaatggcggccaagcccacg
atgataactatcaaaaatcttcgtttttaNattgaccattttgttgttaa
gatttgagcgggcgaaatttctgtacaaaccaaaatatggcttcgttgga
ataccggttgaaacacttgtgtgTAATGCATGCCTCCAAGATGCCAATTA
ATGGGCCTTTCCAGTTTTTATAATTGTTACCCCCCAATGGAtgacatgga
atttccgtagcaaattactttcaagaaagtccggaatttacgtaacaaat
ttacaaaatacctatcaaaaccgtggaattccgttactgacgacccacgg
catggcccgaacatgtttgggcctgttcggaccatgctcgggcctcaaaa
aagtattatttttgttcggaccatgttcgggccatatATTTACAACATCA
TAGGAatagtagaatttaattttatttacctttcctggtttatcatcatc
cattgttaaatattttcattagtcaaattcaaagttctaaataccagttt
gattcacaaagttgtataacagtatACAAAAAAcaatccagaaaaattct
gcttcgaatagaagaagaccacgagaaaagggaacgggataaagaataaa
aagaagaccatattcaGGGGGTTTGTTTGAGGCCGGCGACCGGCGATTTT
CGCCGACCTCAAAGCCCAATATGAGTTCAAAGTCGCCGGCCATAAAGTCT
TTTCTAGATATCCTTGATGTATGANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaataatttgaaa
taaaaagtaaacaaaccttgaacctttcatgaatccaaataaataaaagt
attcatctaaagtgaagattatatttcaaaataaaacgatttccaaacca
acataaagtcagtgtctgccaactaaaaacttCTCTGCAGGGTCACtgac
aaggagttacgacttcagactttagattccaattcttgtataggctgcaa
ctacactgccaaatgatctgtattacaaagacttccaattNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGTTTGTTTGAGGCCGGCGACCGGCGATTTTCGCCGAC
CTCAAAGCCCAATATGAGTTCAAAGTCGCCGGCCATAAAGTCTTTTCTAG
ATATCCTTGATGTATGATAttgtttctgaaaatttattttttgtgatCAT
ATCTTCTGTTAATGAAAGACTTCATTTATATCATTCTCTTGAGTGTTTCT
TCAAGTAAAATCACAGGCTTCTTATATTTAAAAGAATCATGATTATAACA
AACTTTGAAGTGCAGAAGCTTAAAACATCACTTGAAGTATATTGCTATCT
TTTACAGTAGTGTaatattattttctcattcactctctttgtttactttt
aaaCATATGCCTAACGTCTGCTAGCATATTCATTTTATAAGCACTTAACT
TGATAATAAGGGTTTTTTTTCAATGATGTACTTTTAATAAAAActcaaac
aagatatcttttTCAGTACTTAAAACCgcctgatttcaaaattttcttgc
ccttcgggcccaaccatggtggccccTCAGGTGACTCTCACATAGCTGTA
TCACTAAAATAAAATCACGCGGCCCACGCGcaggccatttaaaaaaaata
ttaatcaagaggcccgaacatgttcgagccatgccgtgggtcgtcgttac
tgtaacctaaaaaatcatggaattccaatatggcaatactttaatgcaaa
attaagtaaaattcatggaattccgatacaatttctctttaaagtttgcc
tgaaattccgtgccaaaatttatttcaaaaattgatgtcatccattacCG
TAAGTTGGCCTAATGTCTGTAAGTTGgcctaatgtcgacatccctcttct
aatttcgacatccttatCTAAAGATATGAATGATAGGAAGGTTGGAATCA
CTGATGGACTCATCAACTGATTGcttagcaaaaaaaataagtttcaatca
gcgattccaaccttcctatcattcatatctttaaataaggatgtcgaaat
tagaagacggatgtcgacattagaccaacttacggtagggggtaatgttt
tttttctggaatggcccaatgtaatttaaaaagtgtgaattgtaaaaaaa
taattactttttatgatgctgttactgctgttgtacatattgcaataaaa
aattatgttttgtataAGAAGCAATCAttgttatttctatttggttcaat
tggttcaatgtatcaaatctctcagtttagttggcactttggtattttcg
ttgcgccacagcgaaaggcttgtttttattttagtttgtatctttgaaag
accccattggatttaggcagggctgtctgGGGCTGTCGGATTAAGGACCA
CTCACGGTGCCGTTTGTAGATTTTTTGTTATTCAATCCGTATTGGTGAAA
ATCGTTTATATTGGTTAGGGACAGGATCAGGGTTGAAGTTTGAGAGTCAA
AAAAGGGTTGGGAGTAGCATTGGTAGTTAgacgtccatattcaaagtGTA
TgtgtaacgggaaaagaccgttaggGGAAGGAAAGTCAGGTATTAGTTTA
CCGTTACCCGCCCGCATGTGTTTGAGCTACcgcttaaaaattttcattat
ttaaaaaattttcatcatttctttttttttcagtccaaatatGAAAAACA
TCAATGCATGACTTACTAATTAATGGTTctgacagtatagacctaactct
tcaaacaaaaattacgggaaatgcatgtttggactttgtaccttATGCTG
TACGCAAGCACTAAGCTAAAGTCCtgcaaaatcagttttttgaagtttgc
aaaaaaacgcctcatagaagatctttcaaattcagtatgtatgtgaatag
agcagtaaaaaatacaacttttctatttttcctttttttgcaaaagttct
aggaataaaaataaaaggataatgaTCTGTAATGATAAttcaggggatgt
caatcgaagcGATTGAAGCAATCGAAGTCGATCGAAGTGATtggtcgaat
caatcgaagtcaatcgaagtgattgtcgcatcaatcgaagtcgatcaaac
ctttaaaaaaaatgtaaatctttGATCAACTTCGATCGACTACGATTGAC
TTTGATCGACTTTGATTGacttcgatcaacttcgatttaTGTTTTCTTTC
GAGCCTAAAGGTCAGTCTCCACtagcgcgctgcgatcgcatctttggctt
caatcatttttgctttGAGAAAAACGCAGCGCGCGCTTGCTTTTCAGGAG
AGTAAGCGTTACGTCAGATcacgccaatggaattgcttcatttttcttat
gacCAATAGCGTGGGAAGCTTTgctcaaagaagagctatcgcAGCGTGCG
CAAGTGGAGACTGAACGTTAAGGCAAAAAGGAGACAAGGTGGGTGAAATT
ATTTTCTGCAAGCAAGTTACAACGATAGCGACAAGAAAGtcaatcgaagt
caatcgaagttgatcgaagagatcataaagaggaaaaaatgtaaatcttc
gatcgattcgacaatcacttcgatcgacttcgattgattcgactgatcac
ttcgatcgacttcgattgacttcgatcgaTTCTACAatcgaatttttcga
ttgacatcccctggataATTGagtactatccattgatgatcagcggcact
atcgtaaagctagaatcgcttcgcgtactctttgcttgagaaaatgattg
acagattgaagttttcaccTGCGCGGGAGCTCGCAGGCGTTTtgcgagcg
ttctcggctcaatcctcggaccacgctaaaaatggtagactgagctgtga
tagatcatttcgatggaagttgttaaaatgtttacaaggctcttgacaga
aaatcgtttgttttattgtcaatgatgacagtgcggttattaattttgtt
agatctgacaaattgatgtttgtaagtgNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNttgatgtttgtaagtgcactttatacttttgattccc
attgaagaatcatattctggttttcatgttattagatgctgttttagagc
tttagagatAGCCTGTCTGAACGGCATGAAGTTATGATGCTATCGTCTCT
gtacgtgcgtttgcgtagggaaaaatggcgaaatgcgaaaatcgattttg
gcaaaaaaaaatttttaatgacccctacaagatttgagtatatcttttta
tttattccatgaagcaattactttcaaaaaatagcacttttggatcagaa
aaagtcaaaaaccagctttttccaattttcatttgatctgaaattttcag
tagggttGGTCAACATGGTTCCCTCGCTCATATCAAGGCGGCGTGGGACG
GGGGCAGGGATCAAATTAGCGTATTGCATTTCGCAATTCGCAATGCGTtt
tttggattacttacaagctaaaaattgaaaattgatccattttaggatgc
aaaatcatcagggtgtctacgggaccttgaaaaccttgaaaaccttgaaa
actatcaattttctgggaaaaaccttgaaaaccttgaaaaatcgttaaaa
accttgaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNACTGAGtttcaaaaaaccttgaaaagtgccaaagtttttgccaaaaa
accttgaaaaaccacttaaaaatgaccaaaaaaaccttgaaaaccttaaa
aatcccgaaaaaaaatccgtagacaccctgatcatgcttattaaaaaatt
gcgatgcactttctttcccttatttcgatgcctgGGGGGTCatgtaagag
aattaaagtttccaagtaaaatcttaattatcaccaaaaaagtgcctttt
ttgtccatatctttaaaaaccaaaaatattggccttaaaaattgtttgct
ttcagttcctgtagccagtagtgtgaccccctgtatttctattttatttt
gagccgggtttttcaatagagatgtcacatgactcaaatcccgcagtttt
attggactagagaaagcgaaagtgaaattgcgcaatctgattggatgaat
aaaGTTTCCATGTGAAATGACACGTAAAttattctcattctaaaacaaga
tggcgacGAGAAAATCACCTATTTGCTTTGGaggaaattttgtaaattct
ggttgattttttaaggttttatcttatctaatctcatttactttaattag
taaaggcttcttcaatttttggggaaggtaagtctataaaagttatttgt
tttttggtggaaaaaagtgtttaaaaaagcgttttttgtgctcaaggttt
atttttcttcgcaaatttccACTTTCCCAAACCAAATGCACGTGTCCGCG
TACGCATAGTCTCTCGAAGCCTTCATGCAACTGATTTCATCCACATCCTT
TGTATCATCGCCACTCGCGCGCCCAATGTGAAACAAAGGATATgatgtac
cttaagggaaaaaattttcgcggaatttaatttcgtgagtGAGCCGATTT
cgaaagtttcacggaatttaatttcgcgattgagaaatttcaaaagaatt
ttttttacagagaaaatgtttttcatatttttcatcgatttcaagACATA
TTTCAGTCACATTAACAAactttaacaacaaaataataacatcaaatatG
AATGTTTCTATGATAAGTCATGATAAGtccaaaaattcgaatttcgcgaa
atttaattttgcaatttagccattttggtgtgttttgcagaatttaattt
tgtgaatTACGCCCAAAATCGCAAAActaaattccgcaaaaatttcttcc
acaaaaatttcttctcgtaaaaatttcttcccttaaggtatcatCGGCAC
TAATGTGAAACAAAGGATACGATGTATAATCGCCACTCGCCGTGCGGCCA
AATGTGAAACAAAGGATATGAGCGTGTGCCGGttaaaaatgaagactttc
taCTGCTGTTTACATTTGATCGTTCGCGtggtaaaataataaataatgaa
acaaatgaaattttaccgcatcaaattttgaattcaatgtAACAGTAAAC
TAATACTTAACTTGTGTTTGTCTTAGTGGGTAGGTATATCGGGATGATGA
GAGTTAGCTGTGGCattgatgaccaaaatgaaattccactaaaaattcca
aggaaaaaatcaaagaccACCGTAGCACTCacttctttgtttgctttttc
cTTTTGCACGCTATCCAAAATCCTTTCTCTGAGCAATTTAGTTAGGGGTG
GTTTTATTCTTACCTCAGGAGTTTAAAAAACGAGCCTTTGTTTAGAAATT
ATGATGTAACTCGGCCGTTGTTAACCTCAGAAAATGGCAACCTTTGTAGC
GTTTCGTTTGGATTGATTTTAGCAGGAATGGAAGCTTcggtaaaattttg
gtcaaatcatgAAGAGTGTTAAGGAGGTGGGTAGGTATGTTTTGAAagta
acggtcttttcccgttacgtgTGGCAACTTTGAATATGGACATTGTCACA
ACCTTGTCTCATTGTCTTACTAGCTTCAATATGACTCCCATTTCCTTGAT
GTATTCCTTTCTTTTAAATTGTCTCTCCATCCCGGCTTTTTCTGGCTCTG
TATCACAATTGTTCCCCTCTATTTTCATCcgatttcatcattttcttata
TACAACATTAGTCTATggtattgtattttttgtctTATTGGCCATTTCCC
TACTTCTTTTATTATAATACCCCAGTGGTGTTGTAGTAGGGAATCTCAAG
ATGGCTTTTAGAACCCCCCTTGTAGTTTTTCTAGTCATTGGAAATTCTTT
CCCTCAATATTCGTCCAGCATTCTCAAGGTAATGTGTCAGTGTTGAAACA
ACTGTATTTTCATAAATCAGTATTCTTGCTTCCATTGACACTATTCCCAG
TTGTCCCTTACAATTCTCATAAGTTCTGTTGGAAAcagattcttttcttt
tttagctgTATTTGTTTTTCAATACATCCGCTCTCTGGCAACCAATTTCC
CAGGTAGTTGTATCCACTCTTGGTTTGAATCTTTTCCAGTTTTCACTATc
atgtagcttgttttaccTTTGTCAATGTTGAACGTGAATTTCCTTTCATC
TTCCATAATTTGTAGTTTATGACCAACTTTTTCTACATCTATTTTATCCT
CCCTGCCAAAGCAATATCATCAACATATATGAGGCTATCCACTTCAGCAT
TTAGAGTAACTGTCATGCCTGTTGGTTTTCctaatttattgatttttgaa
gtacTGCTACAACATAAAATAGGGCCAAAAATTGTTTTACTTCTAATTTC
TATGTTGAATGTTTCTGTTTCTCCGTACGGTGTTCTAACTGTGCGTTTCT
ATTCATTGTATACAGCAGCATGGCTTCTCTTTGCCGTAGTCTATTTTCGA
CAATATCACTGACCCAATCCTCCATCCACAGTTTGTTGAAATACTTTTCT
GCATCTACAAACAGTATATTGTATGTAATCCTCTTCAGTTGTCTATTCAT
ATCCAGGGCTATCCAGTCTTCCTTCGTCGACCCTCCTTTAATCCCTCCAT
TTTGATGTTTATCAATTTTGATGTCTTTGGTGACTTTCTGTAATTTTTGG
GTCTTACAATCCTAAATGTTTAAAAGAATTGTCCATCAAATTATCAATCA
AATTATCTTTTCTTCTTTaagtaaaacaaaacaaacaacttAATCTGGTg
acaataataaaataaaaatggcaACCTGTTTATCGATTGCAACTATGGTT
CTCTGTTTTCTGGGTTTCTTCATGCTGTGCATCAGTACTGGGACCCGAAG
ATGGAAGGAAGACATCAACTATGTCAGAGGAACACGTACCTATATTGGTC
TCTGGCAAGCTTGCATTGAATCCGAGGGAAACAATGATGGCTACCCTACC
ACTCAGGGTGTCATCTGTGATAAAGATTACTTGAGACCTCACTTGAATGA
ACCACCTCGTAagtgttattttattaattttctgtAGCGGAAtctttgat
gatatttttgtaaAGTCAACTTTCTGACTTTGGTTTCACCAGGAAAGGTG
TTTTATCACTCCACAAGAATATTGAGAATACTACTAGTGTGTACGAGCAG
CCAGAGCTTTTATTTTAGTAACAGGTTCTTGACTGATTTTCAACAACTTA
TTTTTATAGCATGGTTCAATGCGACACGTGCATTGATGTTGTTATCTTGC
ATTGGAACTGGTTTCGGATTGATCTTTTACATCACAGCTTTCATCACGGA
TAACAGCAAAAAGACCGGCAGCCGATATTTCCCTTGTGTTCTTATCATTT
TCATATCAGGTGAACGATACTGTCCTTTCTTTCTTCGATGTTAATTTGCT
CTTGttaaattcgaaaataatcgtTGAATTGGAGAccttagttcgaatta
taatgatcataacttttgatttttggacctaccgggaggtcctttaattt
gaccgttgtccgttcgtctgttacaagcttttctcgggattggctcatta
gttttttttaattttttgcacNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNaaaactacctaaaaataaggttttttggacttt
atgcaaaattgcttcattagtttttcctgatttttggcagaaagatagag
tgcaaggtaccctaaaatggtgctgaagtaatttttcttggaaaatttct
tttcgtcgtcaaatacggattttcgcttttttggggaaattcccttttac
cattttcctgttagcagcttttctcgggattggctcattagtttttttta
attttttgcacagtgatacaaaatagcaatgcctgaaaagtgacggagcc
cgatttttgaaaaaagattttggggggcaaatttgggccaaaaactacct
aaaaataaggttttttggactttgtgcaaaattgcttcattagtttttcc
tgatttttggcagaaagatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgatttttgg
cagaaagatagagtgcaaggtaccctaaaatgtggctgaagtaatttttc
tcggaaaattttttttcgtcgtcaaatacggattttcgctttttggggga
aattcccctttaccattttcctgttagcagctcttctagggattggctca
ttagttttttttatttttttgcacaatgatacaaaatagcaatgcttgaa
aagtgacggagcccgatttttgaaaaaaatttttggggggcaaatttggg
ccaaaaactacctaaaaataaggttttttggactttNNNNNNNNNNNNNN
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NTCTAAAACTTATTgtgtttgctcaataccaatagtaaaatgtagaatac
ctacttttatctgattttgatcaaggtaggtccattcagcatgttgcttg
ttaattttgattttaattcagGTCTATGTGCTGTGATTGCATTATCTATC
TTCACAACTCATCGCAAATGGGGCGTTCAATATGAAGTCGGAGGCGGTGA
ATTTTACGCCCAGTACTGGACACAGGTCGAAGGAGAAGCTGTTGTTGATG
GTACACGATTCAAAATCGAGACATGGTTGAGATGGTCGTACGGTATTGGT
TGGGGAGGAGTTGCCATGACACTTTTCGCTCTCATTACCGCTGCTTTCTC
TGATCTAACCCGACGACAAGTCCGTTATTAAACTGGAGAATATTTTACTT
AAGTAAAATCAACCAATAGTAACAGAAATGGACTTtatgaattttagatt
tatgaAGAAccgttttggaaaaaaaattatttacagtAGCTGGTAGTGCT
TGTTAGATGCCAGGATATTGAAGATAACCTTTTTGGTAATAAGTACTCAT
ATTGGTGAGTAATTCAAGGGACAGAATGTTACTAAAAATAGTTAATGTTT
TATTATGTACTAGGTTTGAATTTAATTAAAGTTaacaaaattttatgttt
ttagtaGAAGAGACTTTGTTTGCCCTACCTGACCGTTTTCTCAGAAATGT
AAAAAATACTAGGCCCTTAGATGTCTAAATTGAATATTAGGCTGCTGata
tccactaacggattcgtgctccttatactacctgcGTTTTGTAGATGTCT
ACGATTCAGACTAATTGAATATCGAATATGAAGAGGTGATGATGACAACA
TATTATCATCGCTACCAAAATTCTTCTTGCaagttttacaaaaacaaaag
tcTCAACCATGCTGAATTTCGTCACCTTATTTTTGTATGTTAAAAATTCT
TATTAATTTTATGGGTGGtcgttttttatatttaatcatttacttctttt
cctttttataatgattCTTACTTTATTTTAAACgcacaatttttttatat
cttgTATTTACCAAAAGtatatagaaagatttgaaaacgGCTACATTGGA
AGTGATTCGACAAAACTTTGCTTCTTCTAAATTTTCGAGTGTGAGAGAGT
AAGCTACAATCGACTAAACTGCGTGAATTAGAAATAATGGTTATTTTGCA
CAAACGCTCAAAGTAGTGGAAAATTTGCTAATATTTACGTTGTTCTTATG
TATTTACTTGAAGTATACCATGTAAAGTATAATCCATTTTTATGTTGATT
GTCTATCATTTTGTACATTGCCTCTCTTTATGGCTCTAATGATTTTTTAC
Tttaattatgaaaaaatataatcctaaaaaaaaacaatca

Coding sequence (CDS) from alignment at scaffold_44:218418..233807+

>TCONS_00065487 ID=TCONS_00065487|Name=TCONS_00065487|organism=Clytia hemisphaerica|type=CDS|length=1953bp|location=Sequence derived from alignment at scaffold_44:218418..233807+ (Clytia hemisphaerica)
atggcaACCTGTTTATCGATTGCAACTATGGTTCTCTGTTTTCTGGGTTT
CTTCATGCTGTGCATCAGTACTGGGACCCGAAGATGGAAGGAAGACATCA
ACTATGTCAGAGGAACACGTACCTATATTGGTCTCTGGCAAGCTTGCATT
GAATCCGAGGGAAACAATGATGGCTACCCTACCACTCAGGGTGTCATCTG
TGATAAAGATTACTTGAGACCTCACTTGAATGAACCACCTCCATGGTTCA
ATGCGACACGTGCATTGATGTTGTTATCTTGCATTGGAACTGGTTTCGGA
TTGATCTTTTACATCACAGCTTTCATCACGGATAACAGCAAAAAGACCGG
CAGCCGATATTTCCCTTGTGTTCTTATCATTTTCATATCAGGTCTATGTG
CTGTGATTGCATTATCTATCTTCACAACTCATCGCAAATGGGGCGTTCAA
TATGAAGTCGGAGGCGGTGAATTTTACGCCCAGTACTGGACACAGGTCGA
AGGAGAAGCTGTTGTTGATGGTACACGATTCAAAATCGAGACATGGTTGA
GATGGTCGTACGGTATTGGTTGGGGAGGAGTTGCCATGACACTTTTCGCT
CTCATTACCGCTGCTTTCTCTGATCTAACCCGACGACAAGTCCGTTATTA
AatggcaACCTGTTTATCGATTGCAACTATGGTTCTCTGTTTTCTGGGTT
TCTTCATGCTGTGCATCAGTACTGGGACCCGAAGATGGAAGGAAGACATC
AACTATGTCAGAGGAACACGTACCTATATTGGTCTCTGGCAAGCTTGCAT
TGAATCCGAGGGAAACAATGATGGCTACCCTACCACTCAGGGTGTCATCT
GTGATAAAGATTACTTGAGACCTCACTTGAATGAACCACCTCCATGGTTC
AATGCGACACGTGCATTGATGTTGTTATCTTGCATTGGAACTGGTTTCGG
ATTGATCTTTTACATCACAGCTTTCATCACGGATAACAGCAAAAAGACCG
GCAGCCGATATTTCCCTTGTGTTCTTATCATTTTCATATCAGGTCTATGT
GCTGTGATTGCATTATCTATCTTCACAACTCATCGCAAATGGGGCGTTCA
ATATGAAGTCGGAGGCGGTGAATTTTACGCCCAGTACTGGACACAGGTCG
AAGGAGAAGCTGTTGTTGATGGTACACGATTCAAAATCGAGACATGGTTG
AGATGGTCGTACGGTATTGGTTGGGGAGGAGTTGCCATGACACTTTTCGC
TCTCATTACCGCTGCTTTCTCTGATCTAACCCGACGACAAGTCCGTTATT
AAatggcaACCTGTTTATCGATTGCAACTATGGTTCTCTGTTTTCTGGGT
TTCTTCATGCTGTGCATCAGTACTGGGACCCGAAGATGGAAGGAAGACAT
CAACTATGTCAGAGGAACACGTACCTATATTGGTCTCTGGCAAGCTTGCA
TTGAATCCGAGGGAAACAATGATGGCTACCCTACCACTCAGGGTGTCATC
TGTGATAAAGATTACTTGAGACCTCACTTGAATGAACCACCTCCATGGTT
CAATGCGACACGTGCATTGATGTTGTTATCTTGCATTGGAACTGGTTTCG
GATTGATCTTTTACATCACAGCTTTCATCACGGATAACAGCAAAAAGACC
GGCAGCCGATATTTCCCTTGTGTTCTTATCATTTTCATATCAGGTCTATG
TGCTGTGATTGCATTATCTATCTTCACAACTCATCGCAAATGGGGCGTTC
AATATGAAGTCGGAGGCGGTGAATTTTACGCCCAGTACTGGACACAGGTC
GAAGGAGAAGCTGTTGTTGATGGTACACGATTCAAAATCGAGACATGGTT
GAGATGGTCGTACGGTATTGGTTGGGGAGGAGTTGCCATGACACTTTTCG
CTCTCATTACCGCTGCTTTCTCTGATCTAACCCGACGACAAGTCCGTTAT
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041045XLOC_041045Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065487-proteinTCONS_00065487-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065487-exon-scaffold_44-1491911889:218418..218457TCONS_00065487-exon-scaffold_44-1491911889:218418..218457Clytia hemisphaericaexon
TCONS_00065487-exon-scaffold_44-1510915933:218418..218457TCONS_00065487-exon-scaffold_44-1510915933:218418..218457Clytia hemisphaericaexon
TCONS_00065487-exon-scaffold_44-1575043694:218418..218457TCONS_00065487-exon-scaffold_44-1575043694:218418..218457Clytia hemisphaericaexon
TCONS_00065487-exon-scaffold_44-1491911889:228489..228775TCONS_00065487-exon-scaffold_44-1491911889:228489..228775Clytia hemisphaericaexon
TCONS_00065487-exon-scaffold_44-1510915933:228489..228775TCONS_00065487-exon-scaffold_44-1510915933:228489..228775Clytia hemisphaericaexon
TCONS_00065487-exon-scaffold_44-1575043694:228489..228775TCONS_00065487-exon-scaffold_44-1575043694:228489..228775Clytia hemisphaericaexon
TCONS_00065487-exon-scaffold_44-1491911889:228977..229126TCONS_00065487-exon-scaffold_44-1491911889:228977..229126Clytia hemisphaericaexon
TCONS_00065487-exon-scaffold_44-1510915933:228977..229126TCONS_00065487-exon-scaffold_44-1510915933:228977..229126Clytia hemisphaericaexon
TCONS_00065487-exon-scaffold_44-1575043694:228977..229126TCONS_00065487-exon-scaffold_44-1575043694:228977..229126Clytia hemisphaericaexon
TCONS_00065487-exon-scaffold_44-1491911889:232539..233807TCONS_00065487-exon-scaffold_44-1491911889:232539..233807Clytia hemisphaericaexon
TCONS_00065487-exon-scaffold_44-1510915933:232539..233807TCONS_00065487-exon-scaffold_44-1510915933:232539..233807Clytia hemisphaericaexon
TCONS_00065487-exon-scaffold_44-1575043694:232539..233807TCONS_00065487-exon-scaffold_44-1575043694:232539..233807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:218418..233807 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.34479	7.695	15.2743	17.4075	88.029	49.2461	57.7288	59.442	22.826	31.5743	16.2959	20.9354	18.7536	12.7653	8.19682	5.62637	15.4174	8.59886	5.51718	13.0714	10.9299	10.5165	8.36705	10.0203	3.46679	3.09497	9.97447	9.09278	8.43372	9.94531
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004031PMP22/EMP/MP20/Claudin
IPR006667SLC41_membr_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006812cation transport
Vocabulary: Molecular Function
TermDefinition
GO:0008324cation transmembrane transporter activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006812 cation transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008324 cation transmembrane transporter activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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